pycom05g24700

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0005034
Physical Location & Seq
Forward (+)
26238422 .. 26239252
831 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 831 bp
ATGGGGCCCAACCACCACTCATTTCTCCTAATCTTCTTTCTCACCACTCTGTTCTCAGCCATCAACCCAATCGCCACCGTCACTGCCTCTCCCTCACCACCACCGCCACCGCCACAAACCCCATCTCCATCTCCATCACCATCATCAACACCACCATCCCCACCGCCATTATCTCCGCCACCGCCTCCTCTGCATTCACGGCCATCCGCAAGCGCGACGCCCCAACAACTCAACAACATAATCGACGCCCTAATCGGAGCTGGCGACTTCGGGAACTGGGTCAACATCATCACCGGCGCAAACCCACTAGTCCTCCCTCTAAGCGCCACCCTCTTCATCCCGCAAGACAACGCTTTGAACAGCCTCCCCACCACCGACCCCTTCATGTTCCCCTACCACGTCGTCCCGCAGCGCCTCAGCTTCGCCGACCTCCAGCTCTTCAAGCCCGGATCCCGCCTCCCTACTCTGCTTCCCGGCAAGTCCATCCTCATCACGAACACCTCCCCCTCCAATTTCACCCTCGACGACGCTCCGGTCACTCAGCCCGACCTCTACGTCACCGCCACGATGGCGGTCCACGGCGTCGGAACGATTCTTCAGTACTCTGTTTACGGCGACGGGCTCAACCTCTTGCCCAAGCCCAATTCCGAGCAGGGGCAGCAGCAGCATAATCCTCCGCCGTCATCGCCGCAGGGGTTGTTTCTGCCAACCGGGGAAGCCATCGGCGCTGGGTGGAAGTCTGATGCGGCGCCGCCGTGCAACTGTGTCGAGTTTCCGGTCGGGTGGTTCTTGATTGCTTGTGTGGTTTTGGGGTTCAGGATTCACAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

277

Amino Acids

29.23

Weight (kDa)

5.9

Isoelectric Point (pI)

63.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 108 - 199 4.2e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 533, 554
AccB1I GGYRCC 1 cut(s) 748
AccII CGCG 1 cut(s) 215
AclWI GGATC 2 cut(s) 444, 457
AcoI YGGCCR 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 581
AcyI GRCGYC 4 cut(s) 218, 246, 582, 749
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 1 cut(s) 654
AgsI TTSAA 2 cut(s) 358, 442
AhlI ACTAGT 1 cut(s) 307
AjiI CACGTC 1 cut(s) 400
AluBI AGCT 3 cut(s) 260, 420, 436
AluI AGCT 3 cut(s) 260, 420, 436
AlwI GGATC 2 cut(s) 444, 457
AoxI GGCC 2 cut(s) 5, 200
ApaI GGGCCC 1 cut(s) 9
ApeKI GCWGC 4 cut(s) 409, 658, 661, 664
AspLEI GCGC 6 cut(s) 215, 299, 326, 414, 728, 751
AspS9I GGNCC 3 cut(s) 5, 6, 574
AsuC2I CCSGG 3 cut(s) 447, 474, 712
AsuHPI GGTGA 6 cut(s) 34, 87, 129, 283, 508, 550
AvaII GGWCC 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 9
BamHI GGATCC 1 cut(s) 449
BanI GGYRCC 1 cut(s) 748
BanII GRGCYC 2 cut(s) 9, 624
BbvCI CCTCAGC 1 cut(s) 416
BbvI GCAGC 4 cut(s) 421, 670, 673, 676
BceAI ACGGC 5 cut(s) 215, 595, 628, 664, 739
BcgI CGANNNNNNTGC 2 cut(s) 748, 782
BcnI CCSGG 3 cut(s) 447, 474, 712
BcuI ACTAGT 1 cut(s) 307
BfaI CTAG 1 cut(s) 308
BfoI RGCGCY 4 cut(s) 327, 415, 729, 752
BglI GCCNNNNNGGC 1 cut(s) 569
BisI GCNGC 7 cut(s) 410, 659, 662, 665, 689, 747, 752
BlsI GCNGC 7 cut(s) 411, 660, 663, 666, 690, 748, 753
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 3 cut(s) 447, 474, 712
Bme18I GGWCC 1 cut(s) 574
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 3 cut(s) 5, 6, 574
BmiI GGNNCC 4 cut(s) 6, 7, 451, 750
BmrFI CCNGG 3 cut(s) 447, 474, 712
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 733
BmuI ACTGGG 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 416
BpuMI CCSGG 3 cut(s) 447, 474, 712
BsaHI GRCGYC 4 cut(s) 218, 246, 582, 749
BsaJI CCNNGG 2 cut(s) 577, 711
BsaWI WCCGGW 2 cut(s) 532, 775
BsaXI ACNNNNNCTCC 6 cut(s) 73, 103, 109, 139, 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 654
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 577, 711
BseGI GGATG 4 cut(s) 155, 203, 336, 483
BseLI CCNNNNNNNGG 1 cut(s) 654
BseMII CTCAG 3 cut(s) 69, 430, 554
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 4 cut(s) 421, 670, 673, 676
BseYI CCCAGC 1 cut(s) 728
Bsh1236I CGCG 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 780
BshFI GGCC 2 cut(s) 7, 202
BshNI GGYRCC 1 cut(s) 748
BsiEI CGRYCG 1 cut(s) 780
BsiSI CCGG 6 cut(s) 294, 447, 474, 533, 711, 776
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 654
BsmFI GGGAC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 2 cut(s) 7, 202
Bsp120I GGGCCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 9, 624
Bsp143I GATC 1 cut(s) 449
BspANI GGCC 2 cut(s) 7, 202
BspCNI CTCAG 3 cut(s) 68, 429, 553
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 4 cut(s) 6, 7, 451, 750
BspPI GGATC 2 cut(s) 444, 457
BspQI GCTCTTC 1 cut(s) 443
BspT107I GGYRCC 1 cut(s) 748
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 577, 711
BssMI GATC 1 cut(s) 449
BssNI GRCGYC 4 cut(s) 218, 246, 582, 749
Bst4CI ACNGT 2 cut(s) 79, 764
Bst6I CTCTTC 2 cut(s) 338, 443
BstACI GRCGYC 4 cut(s) 218, 246, 582, 749
BstC8I GCNNGC 2 cut(s) 211, 262
BstDEI CTNAG 4 cut(s) 55, 320, 416, 540
BstDSI CCRYGG 1 cut(s) 577
BstF5I GGATG 4 cut(s) 155, 203, 336, 483
BstFNI CGCG 1 cut(s) 215
BstH2I RGCGCY 4 cut(s) 327, 415, 729, 752
BstHHI GCGC 6 cut(s) 215, 299, 326, 414, 728, 751
BstKTI GATC 1 cut(s) 452
BstMBI GATC 1 cut(s) 449
BstMCI CGRYCG 1 cut(s) 780
BstMWI GCNNNNNNNGC 8 cut(s) 190, 199, 442, 569, 658, 664, 685, 725
BstSCI CCNGG 3 cut(s) 445, 472, 710
BstSLI GKGCMC 1 cut(s) 9
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 4 cut(s) 421, 670, 673, 676
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuRI GGCC 2 cut(s) 7, 202
BtgI CCRYGG 1 cut(s) 577
BtgZI GCGATG 1 cut(s) 669
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 4 cut(s) 155, 203, 336, 483
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 211, 262
CfoI GCGC 6 cut(s) 215, 299, 326, 414, 728, 751
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 3 cut(s) 5, 6, 574
CseI GACGC 4 cut(s) 226, 254, 536, 571
Csp6I GTAC 1 cut(s) 601
CviAII CATG 1 cut(s) 385
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 4 cut(s) 55, 320, 416, 540
DinI GGCGCC 1 cut(s) 750
DpnI GATC 1 cut(s) 451
DpnII GATC 1 cut(s) 449
DrdI GACNNNNNNGTC 2 cut(s) 533, 554
DseDI GACNNNNNNGTC 2 cut(s) 533, 554
EaeI YGGCCR 1 cut(s) 200
Eam1104I CTCTTC 2 cut(s) 338, 443
EarI CTCTTC 2 cut(s) 338, 443
EciI GGCGGA 2 cut(s) 165, 666
Eco24I GRGCYC 2 cut(s) 9, 624
Eco47I GGWCC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 581
EcoO109I RGGNCCY 1 cut(s) 5
EcoT38I GRGCYC 2 cut(s) 9, 624
EgeI GGCGCC 1 cut(s) 750
EheI GGCGCC 1 cut(s) 750
FaeI CATG 1 cut(s) 388
FaiI YATR 3 cut(s) 239, 386, 669
FaqI GGGAC 1 cut(s) 389
FatI CATG 1 cut(s) 384
FauI CCCGC 3 cut(s) 348, 414, 461
Fnu4HI GCNGC 7 cut(s) 410, 659, 662, 665, 689, 747, 752
FokI GGATG 4 cut(s) 142, 190, 323, 470
FriOI GRGCYC 2 cut(s) 9, 624
Fsp4HI GCNGC 7 cut(s) 410, 659, 662, 665, 689, 747, 752
FspBI CTAG 1 cut(s) 308
GlaI GCGC 6 cut(s) 214, 298, 325, 413, 727, 750
GluI GCNGC 7 cut(s) 410, 659, 662, 665, 689, 747, 752
GsaI CCCAGC 1 cut(s) 732
GsuI CTGGAG 1 cut(s) 416
HaeII RGCGCY 4 cut(s) 327, 415, 729, 752
HaeIII GGCC 2 cut(s) 7, 202
HapII CCGG 6 cut(s) 294, 447, 474, 533, 711, 776
HgaI GACGC 4 cut(s) 226, 254, 536, 571
HhaI GCGC 6 cut(s) 215, 299, 326, 414, 728, 751
Hin1I GRCGYC 4 cut(s) 218, 246, 582, 749
Hin1II CATG 1 cut(s) 388
Hin6I GCGC 6 cut(s) 213, 297, 324, 412, 726, 749
HinP1I GCGC 6 cut(s) 213, 297, 324, 412, 726, 749
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 2 cut(s) 592, 820
HpaII CCGG 6 cut(s) 294, 447, 474, 533, 711, 776
HphI GGTGA 6 cut(s) 34, 87, 129, 283, 508, 550
Hpy166II GTNNAC 3 cut(s) 283, 577, 610
Hpy188I TCNGA 4 cut(s) 257, 587, 649, 742
Hpy188III TCNNGA 4 cut(s) 271, 493, 790, 817
Hpy8I GTNNAC 3 cut(s) 283, 577, 610
Hpy99I CGWCG 7 cut(s) 220, 248, 404, 527, 530, 587, 620
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 2 cut(s) 79, 764
HpyCH4IV ACGT 2 cut(s) 399, 555
HpyCH4V TGCA 2 cut(s) 193, 759
HpyF10VI GCNNNNNNNGC 8 cut(s) 190, 199, 442, 569, 658, 664, 685, 725
HpyF3I CTNAG 4 cut(s) 55, 320, 416, 540
HpySE526I ACGT 2 cut(s) 399, 555
Hsp92I GRCGYC 4 cut(s) 218, 246, 582, 749
Hsp92II CATG 1 cut(s) 388
HspAI GCGC 6 cut(s) 213, 297, 324, 412, 726, 749
KasI GGCGCC 1 cut(s) 748
Kzo9I GATC 1 cut(s) 449
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 2 cut(s) 257, 535
Lsp1109I GCAGC 4 cut(s) 421, 670, 673, 676
LweI GCATC 1 cut(s) 733
MaeI CTAG 1 cut(s) 308
MaeII ACGT 2 cut(s) 399, 555
MaeIII GTNAC 3 cut(s) 79, 535, 556
MalI GATC 1 cut(s) 451
MboI GATC 1 cut(s) 449
MboII GAAGA 4 cut(s) 25, 325, 430, 587
MflI RGATCY 1 cut(s) 449
MhlI GDGCHC 2 cut(s) 9, 624
MluCI AATT 2 cut(s) 511, 643
Mly113I GGCGCC 1 cut(s) 749
MmeI TCCRAC 1 cut(s) 565
MspI CCGG 6 cut(s) 294, 447, 474, 533, 711, 776
MspR9I CCNGG 3 cut(s) 447, 474, 712
Mva1269I GAATGC 1 cut(s) 193
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 8 cut(s) 190, 199, 442, 569, 658, 664, 685, 725
NarI GGCGCC 1 cut(s) 749
NciI CCSGG 3 cut(s) 447, 474, 712
NdeII GATC 1 cut(s) 449
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 4 cut(s) 6, 7, 451, 750
NmuCI GTSAC 3 cut(s) 79, 535, 556
PciSI GCTCTTC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 2 cut(s) 592, 820
PkrI GCNGC 7 cut(s) 411, 660, 663, 666, 690, 748, 753
PluTI GGCGCC 1 cut(s) 752
PspFI CCCAGC 1 cut(s) 728
PspN4I GGNNCC 4 cut(s) 6, 7, 451, 750
PspOMI GGGCCC 1 cut(s) 5
PspPI GGNCC 3 cut(s) 5, 6, 574
PsuI RGATCY 1 cut(s) 449
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
SapI GCTCTTC 1 cut(s) 443
SatI GCNGC 7 cut(s) 410, 659, 662, 665, 689, 747, 752
Sau3AI GATC 1 cut(s) 449
Sau96I GGNCC 3 cut(s) 5, 6, 574
ScaI AGTACT 1 cut(s) 602
ScrFI CCNGG 3 cut(s) 447, 474, 712
SduI GDGCHC 2 cut(s) 9, 624
SfaNI GCATC 1 cut(s) 733
SfoI GGCGCC 1 cut(s) 750
SgrAI CRCCGGYG 1 cut(s) 293
SinI GGWCC 1 cut(s) 574
SpeI ACTAGT 1 cut(s) 307
Sse9I AATT 2 cut(s) 511, 643
SspDI GGCGCC 1 cut(s) 748
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 3 cut(s) 445, 472, 710
TaaI ACNGT 2 cut(s) 79, 764
TaiI ACGT 2 cut(s) 402, 558
TaqI TCGA 3 cut(s) 243, 522, 768
TasI AATT 2 cut(s) 511, 643
TatI WGTACW 1 cut(s) 600
TauI GCSGC 3 cut(s) 691, 749, 754
TfiI GAWTC 2 cut(s) 592, 820
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 3 cut(s) 79, 535, 556
TseI GCWGC 4 cut(s) 409, 658, 661, 664
Tsp45I GTSAC 3 cut(s) 79, 535, 556
TspDTI ATGAA 2 cut(s) 325, 373
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 574
XspI CTAG 1 cut(s) 308
ZrmI AGTACT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.