pycom06g10600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0005250
Physical Location & Seq
Forward (+)
15888559 .. 15888789
231 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGGAAAACGTGAACGGTATCATATTCCGGGAGACGCTTGACCAGGTGGCGAGCTGGCTCAGCGTCACCGTGTCCACCGCCTTCTTCTCCTCCCTCGAGCGCTTCTCGTGCGTCAACCTCTCCACCACCGACTCCGACTACGAAGACGACGACGAGGCCAAGGACCGCCCTCTCACCCTCACCAATCACAACAACGAACCTCCAAACGACGTCGCTAATCTCCCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.51

Weight (kDa)

4.05

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 213
AciI CCGC 2 cut(s) 78, 166
AcyI GRCGYC 1 cut(s) 210
AfeI AGCGCT 1 cut(s) 101
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 95
Aor51HI AGCGCT 1 cut(s) 101
AoxI GGCC 1 cut(s) 156
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 3 cut(s) 58, 166, 172
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 163
BauI CACGAG 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 44
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 103
BlpI GCTNAGC 1 cut(s) 59
Bme1390I CCNGG 2 cut(s) 29, 44
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 29, 44
BpiI GAAGAC 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu1102I GCTNAGC 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 79
BshFI GGCC 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 26
BsmBI CGTCTC 1 cut(s) 26
BsnI GGCC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 95
Bsp1720I GCTNAGC 1 cut(s) 59
BspACI CCGC 2 cut(s) 78, 166
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 159
BssNI GRCGYC 1 cut(s) 210
BssSI CACGAG 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 17, 70
BstACI GRCGYC 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 52, 56
BstDEI CTNAG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 26
BstMWI GCNNNNNNNGC 2 cut(s) 60, 108
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 27, 42
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 1 cut(s) 158
Cac8I GCNNGC 2 cut(s) 52, 56
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 3 cut(s) 43, 52, 100
CsiI ACCWGGT 1 cut(s) 42
CviJI RGCY 3 cut(s) 54, 58, 158
CviKI_1 RGCY 3 cut(s) 54, 58, 158
DdeI CTNAG 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 163
Eco47III AGCGCT 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 26
FaiI YATR 1 cut(s) 23
GlaI GCGC 1 cut(s) 101
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 28
HgaI GACGC 3 cut(s) 43, 52, 100
HhaI GCGC 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 210
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 1 cut(s) 131
HpaII CCGG 1 cut(s) 28
HphI GGTGA 3 cut(s) 58, 166, 172
Hpy166II GTNNAC 3 cut(s) 13, 75, 115
Hpy188I TCNGA 2 cut(s) 136, 230
Hpy8I GTNNAC 3 cut(s) 13, 75, 115
Hpy99I CGWCG 4 cut(s) 152, 155, 212, 215
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 2 cut(s) 17, 70
HpyCH4IV ACGT 2 cut(s) 9, 210
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 108
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 2 cut(s) 9, 210
Hsp92I GRCGYC 1 cut(s) 210
HspAI GCGC 1 cut(s) 100
LpnPI CCDG 4 cut(s) 29, 40, 41, 56
MabI ACCWGGT 1 cut(s) 42
MaeII ACGT 2 cut(s) 9, 210
MaeIII GTNAC 1 cut(s) 64
MboII GAAGA 2 cut(s) 76, 155
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 7 cut(s) 100, 104, 128, 148, 180, 188, 210
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 2 cut(s) 29, 44
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 60, 108
NciI CCSGG 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 64
PaeR7I CTCGAG 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfoI TCCNGGA 1 cut(s) 27
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspPI GGNCC 1 cut(s) 163
PspXI VCTCGAGB 1 cut(s) 95
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 29, 44
SetI ASST 6 cut(s) 12, 48, 56, 120, 202, 213
SexAI ACCWGGT 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 95
SinI GGWCC 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SsiI CCGC 2 cut(s) 78, 166
StyD4I CCNGG 2 cut(s) 27, 42
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 2 cut(s) 17, 70
TaiI ACGT 2 cut(s) 12, 213
TaqI TCGA 1 cut(s) 96
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 163
XhoI CTCGAG 1 cut(s) 95
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.