pycom07g21970

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0002292
Physical Location & Seq
Forward (+)
23441454 .. 23442062
609 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 558 bp
ATGAATAAATTGAGTGTACGACATGTGAATGTCCAACAACAAAGACTTCGGGGCTTGTTGTCGAATATCTGCAGTGCATCATTTCTGATAGATCAAATCGAGCCAATTCCCGCAAACTCCAATCCCACCACCACCTTTCCAGCCGGACTCAGCCCTCCGGGCGGCATTTGGCAGGACAGCACTGGATCAAACAAGAATGGGACTGGCAGTGGGAGCAATGAACGACCACACTCAGCAGGGAAGTCCATCATGGGTTCTAACCACACTTTGTTTCTCTACTTTGTGGCTTCCAACACGATTGGATTTTTTGTTTCACTGTACATGATCAATGTCCTCACCAGCAATTTCCCTTTGCAGTTGGAGCTTCAAATTTGTATTGTCGCGATGTACAGCACGTACAACACTGCAGTTTTCAGCATTGCACCGGAGAACGTGCGGTACTTAGTCCTTCTGTTCTCTGTAGTTTATAATGGTGTTTGTTCTATAAGTTGGCATCTTTGCCAACCGCAATCGATACTGTCGTTTGATACTGCAAATGAAAACCTGGTGGGTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

186

Amino Acids

20.12

Weight (kDa)

6.88

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 43 - 133 1.5e-11 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AccII CGCG 1 cut(s) 383
AciI CCGC 4 cut(s) 111, 162, 436, 506
AclWI GGATC 1 cut(s) 193
AcsI RAATTY 1 cut(s) 369
AfaI GTAC 5 cut(s) 18, 320, 389, 398, 440
AfiI CCNNNNNNNGG 1 cut(s) 161
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 1 cut(s) 368
AjnI CCWGG 1 cut(s) 543
AluBI AGCT 1 cut(s) 364
AluI AGCT 1 cut(s) 364
AlwI GGATC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 369
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 328
BaeI ACNNNNGTAYC 2 cut(s) 506, 539
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 545
BclI TGATCA 1 cut(s) 324
BcnI CCSGG 1 cut(s) 159
BfmI CTRYAG 3 cut(s) 70, 405, 459
BglI GCCNNNNNGGC 1 cut(s) 159
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme1390I CCNGG 2 cut(s) 159, 545
BmrFI CCNGG 2 cut(s) 159, 545
BmsI GCATC 2 cut(s) 86, 502
BpuMI CCSGG 1 cut(s) 159
Bsa29I ATCGAT 1 cut(s) 512
BsaAI YACGTR 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 424
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 187, 208
Bse3DI GCAATG 2 cut(s) 223, 417
BseBI CCWGG 1 cut(s) 545
BseCI ATCGAT 1 cut(s) 512
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 2 cut(s) 223, 417
BseMII CTCAG 2 cut(s) 163, 246
BseNI ACTGG 2 cut(s) 187, 208
Bsh1236I CGCG 1 cut(s) 383
BshVI ATCGAT 1 cut(s) 512
BsiSI CCGG 3 cut(s) 144, 158, 425
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 214
Bsp1407I TGTACA 2 cut(s) 318, 387
Bsp143I GATC 3 cut(s) 91, 185, 324
Bsp68I TCGCGA 1 cut(s) 383
BspACI CCGC 4 cut(s) 111, 162, 436, 506
BspCNI CTCAG 2 cut(s) 162, 245
BspDI ATCGAT 1 cut(s) 512
BspFNI CGCG 1 cut(s) 383
BspMAI CTGCAG 2 cut(s) 74, 409
BspPI GGATC 1 cut(s) 193
BsrDI GCAATG 2 cut(s) 223, 417
BsrGI TGTACA 2 cut(s) 318, 387
BsrI ACTGG 2 cut(s) 187, 208
BssMI GATC 3 cut(s) 91, 185, 324
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 2 cut(s) 318, 519
BstAUI TGTACA 2 cut(s) 318, 387
BstBAI YACGTR 1 cut(s) 396
BstDEI CTNAG 3 cut(s) 149, 232, 442
BstFNI CGCG 1 cut(s) 383
BstKTI GATC 3 cut(s) 94, 188, 327
BstMBI GATC 3 cut(s) 91, 185, 324
BstMWI GCNNNNNNNGC 3 cut(s) 159, 213, 361
BstNI CCWGG 1 cut(s) 545
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 2 cut(s) 157, 543
BstSFI CTRYAG 3 cut(s) 70, 405, 459
BstUI CGCG 1 cut(s) 383
Bsu15I ATCGAT 1 cut(s) 512
BsuTUI ATCGAT 1 cut(s) 512
BtgZI GCGATG 1 cut(s) 398
BtsI GCAGTG 3 cut(s) 79, 214, 402
BtsIMutI CAGTG 5 cut(s) 79, 180, 214, 314, 402
BtuMI TCGCGA 1 cut(s) 383
ClaI ATCGAT 1 cut(s) 512
CsiI ACCWGGT 1 cut(s) 543
Csp6I GTAC 5 cut(s) 17, 319, 388, 397, 439
CviAII CATG 3 cut(s) 23, 250, 322
CviJI RGCY 6 cut(s) 54, 103, 143, 153, 287, 364
CviKI_1 RGCY 6 cut(s) 54, 103, 143, 153, 287, 364
CviQI GTAC 5 cut(s) 17, 319, 388, 397, 439
DdeI CTNAG 3 cut(s) 149, 232, 442
DpnI GATC 3 cut(s) 93, 187, 326
DpnII GATC 3 cut(s) 91, 185, 324
EcoRII CCWGG 1 cut(s) 543
FaeI CATG 3 cut(s) 26, 253, 325
FaiI YATR 5 cut(s) 24, 251, 323, 468, 485
FaqI GGGAC 1 cut(s) 214
FatI CATG 3 cut(s) 22, 249, 321
FauI CCCGC 1 cut(s) 118
FbaI TGATCA 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 163
HapII CCGG 3 cut(s) 144, 158, 425
Hin1II CATG 3 cut(s) 26, 253, 325
HinfI GANTC 1 cut(s) 147
HpaII CCGG 3 cut(s) 144, 158, 425
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 382
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 2 cut(s) 318, 519
HpyCH4IV ACGT 2 cut(s) 395, 432
HpyCH4V TGCA 6 cut(s) 72, 77, 355, 407, 422, 533
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 213, 361
HpyF3I CTNAG 3 cut(s) 149, 232, 442
HpySE526I ACGT 2 cut(s) 395, 432
Hsp92II CATG 3 cut(s) 26, 253, 325
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 3 cut(s) 91, 185, 324
LmnI GCTCC 2 cut(s) 213, 361
LweI GCATC 2 cut(s) 86, 502
MabI ACCWGGT 1 cut(s) 543
MaeII ACGT 2 cut(s) 395, 432
MalI GATC 3 cut(s) 93, 187, 326
MboI GATC 3 cut(s) 91, 185, 324
MluCI AATT 4 cut(s) 8, 105, 343, 369
MlyI GAGTC 1 cut(s) 141
MmeI TCCRAC 3 cut(s) 58, 315, 339
MnlI CCTC 2 cut(s) 165, 344
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 3 cut(s) 144, 158, 425
MspR9I CCNGG 2 cut(s) 159, 545
MvaI CCWGG 1 cut(s) 545
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 3 cut(s) 159, 213, 361
NciI CCSGG 1 cut(s) 159
NdeII GATC 3 cut(s) 91, 185, 324
NlaIII CATG 3 cut(s) 26, 253, 325
NruI TCGCGA 1 cut(s) 383
NspI RCATGY 1 cut(s) 26
PciI ACATGT 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 518
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 396
PscI ACATGT 1 cut(s) 22
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 543
PspGI CCWGG 1 cut(s) 543
PsrI GAACNNNNNNTAC 2 cut(s) 422, 454
PstI CTGCAG 2 cut(s) 74, 409
RruI TCGCGA 1 cut(s) 383
RsaI GTAC 5 cut(s) 18, 320, 389, 398, 440
RsaNI GTAC 5 cut(s) 17, 319, 388, 397, 439
RseI CAYNNNNRTG 1 cut(s) 27
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 3 cut(s) 91, 185, 324
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 2 cut(s) 159, 545
SetI ASST 5 cut(s) 137, 366, 398, 435, 546
SexAI ACCWGGT 1 cut(s) 543
SfaNI GCATC 2 cut(s) 86, 502
SfcI CTRYAG 3 cut(s) 70, 405, 459
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 4 cut(s) 8, 105, 343, 369
SsiI CCGC 4 cut(s) 111, 162, 436, 506
StyD4I CCNGG 2 cut(s) 157, 543
TaaI ACNGT 2 cut(s) 318, 519
TaiI ACGT 2 cut(s) 398, 435
TaqI TCGA 3 cut(s) 62, 99, 512
TasI AATT 4 cut(s) 8, 105, 343, 369
TatI WGTACW 2 cut(s) 318, 387
TauI GCSGC 1 cut(s) 165
TscAI CASTG 5 cut(s) 79, 187, 214, 321, 409
TspDTI ATGAA 3 cut(s) 17, 234, 552
TspRI CASTG 5 cut(s) 79, 187, 214, 321, 409
XapI RAATTY 1 cut(s) 369
XceI RCATGY 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.