Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Reverse (-)

13020515 .. 13022646

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13990.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTTCTTCTACCTTCAGCGGCGACGAAACCGCTCCCTTCTTCGGCTTCCTCGGCGCCGCCGCAGCCCTCATCTTCTCCTGCATGGGCGCCGCCTATGGTACGGCCAAGAGCGGCGTGGGCGTGGCCTCCATGGGAGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTTCCGGTGGTTATGGCGGGAGTGCTCGGGATCTATGGGCTTATTATAGCTGTTATTATTAGTACCGGGATTAACCCGAAGGCCAAATCTTATTATCTGTTTGATGGGTATGCTCACTTGTCATCTGGCCTTGCTTGCGGTCTGGCCGGACTCTCCGCCGGAATGGCGATTGGGATTGTCGGTGACGCAGGTGTCCGAGCTAATGCACAGCAGCCCAAGCTCTTTGTTGGTATGATTCTTATCCTCATCTTTGCTGAAGCTCTTGCCTTGTATGGTCTCATTGTGGGGATCGATCCTTTCATGCCGATCAGGGCAATCTCGCGCAGATTAAGGGAGTCAAGTATGTTGTTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

176

Amino Acids

18.01

Weight (kDa)

9.0

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
AasI	GACNNNNNNGTC	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	350
AccB1I	GGYRCC	2 cut(s)	56, 89
AccBSI	CCGCTC	2 cut(s)	35, 114
AccII	CGCG	1 cut(s)	493
AclWI	GGATC	3 cut(s)	209, 458, 467
AcoI	YGGCCR	3 cut(s)	105, 146, 315
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	2 cut(s)	57, 90
AfaI	GTAC	2 cut(s)	103, 235
AfiI	CCNNNNNNNGG	1 cut(s)	44
AluBI	AGCT	5 cut(s)	154, 221, 371, 391, 431
AluI	AGCT	5 cut(s)	154, 221, 371, 391, 431
Alw21I	GWGCWC	2 cut(s)	156, 198
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	3 cut(s)	209, 458, 467
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	6 cut(s)	105, 126, 146, 252, 298, 315
ApeKI	GCWGC	2 cut(s)	65, 382
AspLEI	GCGC	3 cut(s)	59, 92, 495
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	197
BanI	GGYRCC	2 cut(s)	56, 89
BanII	GRGCYC	1 cut(s)	156
BauI	CACGAG	1 cut(s)	155
Bbv12I	GWGCWC	2 cut(s)	156, 198
BbvI	GCAGC	2 cut(s)	77, 394
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	1 cut(s)	526
BfoI	RGCGCY	2 cut(s)	60, 93
BfuAI	ACCTGC	1 cut(s)	350
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	8 cut(s)	22, 60, 63, 66, 93, 115, 146, 383
BlsI	GCNGC	8 cut(s)	23, 61, 64, 67, 94, 116, 147, 384
Bme1390I	CCNGG	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	58, 91
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	238
Bsa29I	ATCGAT	2 cut(s)	167, 462
BsaBI	GATNNNNATC	1 cut(s)	410
BsaHI	GRCGYC	2 cut(s)	57, 90
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	2 cut(s)	52, 132
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	410
BseCI	ATCGAT	2 cut(s)	167, 462
BseDI	CCNNGG	2 cut(s)	52, 132
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	77, 394
Bsh1236I	CGCG	1 cut(s)	493
Bsh1285I	CGRYCG	2 cut(s)	149, 171
BshFI	GGCC	6 cut(s)	107, 128, 148, 254, 300, 317
BshNI	GGYRCC	2 cut(s)	56, 89
BshVI	ATCGAT	2 cut(s)	167, 462
BsiEI	CGRYCG	2 cut(s)	149, 171
BsiHKAI	GWGCWC	2 cut(s)	156, 198
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	5 cut(s)	149, 176, 237, 318, 330
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	452
BsnI	GGCC	6 cut(s)	107, 128, 148, 254, 300, 317
Bso31I	GGTCTC	1 cut(s)	452
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	156, 198
Bsp143I	GATC	5 cut(s)	168, 201, 459, 463, 477
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	6 cut(s)	107, 128, 148, 254, 300, 317
BspDI	ATCGAT	2 cut(s)	167, 462
BspFNI	CGCG	1 cut(s)	493
BspLI	GGNNCC	2 cut(s)	58, 91
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	3 cut(s)	209, 458, 467
BspT107I	GGYRCC	2 cut(s)	56, 89
BspTNI	GGTCTC	1 cut(s)	452
BsrBI	CCGCTC	2 cut(s)	35, 114
BssECI	CCNNGG	2 cut(s)	52, 132
BssMI	GATC	5 cut(s)	168, 201, 459, 463, 477
BssNI	GRCGYC	2 cut(s)	57, 90
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	155
BstACI	GRCGYC	2 cut(s)	57, 90
BstC8I	GCNNGC	1 cut(s)	307
BstDSI	CCRYGG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	493
BstH2I	RGCGCY	2 cut(s)	60, 93
BstHHI	GCGC	3 cut(s)	59, 92, 495
BstKTI	GATC	5 cut(s)	171, 204, 462, 466, 480
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	5 cut(s)	168, 201, 459, 463, 477
BstMCI	CGRYCG	2 cut(s)	149, 171
BstMWI	GCNNNNNNNGC	7 cut(s)	54, 65, 120, 151, 306, 335, 388
BstSCI	CCNGG	1 cut(s)	236
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	2 cut(s)	77, 394
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BstZI	CGGCCG	1 cut(s)	146
Bsu15I	ATCGAT	2 cut(s)	167, 462
BsuRI	GGCC	6 cut(s)	107, 128, 148, 254, 300, 317
BsuTUI	ATCGAT	2 cut(s)	167, 462
BtgI	CCRYGG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	3 cut(s)	59, 92, 495
ClaI	ATCGAT	2 cut(s)	167, 462
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	102, 234
CviAII	CATG	3 cut(s)	85, 133, 472
CviQI	GTAC	2 cut(s)	102, 234
DinI	GGCGCC	2 cut(s)	58, 91
DpnI	GATC	5 cut(s)	170, 203, 461, 465, 479
DpnII	GATC	5 cut(s)	168, 201, 459, 463, 477
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	3 cut(s)	105, 146, 315
EagI	CGGCCG	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	316
Ecl136II	GAGCTC	1 cut(s)	154
EclXI	CGGCCG	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	452
Eco52I	CGGCCG	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	156
EgeI	GGCGCC	2 cut(s)	58, 91
EheI	GGCGCC	2 cut(s)	58, 91
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	3 cut(s)	88, 136, 475
FatI	CATG	3 cut(s)	84, 132, 471
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	8 cut(s)	22, 60, 63, 66, 93, 115, 146, 383
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	8 cut(s)	22, 60, 63, 66, 93, 115, 146, 383
FspBI	CTAG	1 cut(s)	526
GlaI	GCGC	3 cut(s)	58, 91, 494
GluI	GCNGC	8 cut(s)	22, 60, 63, 66, 93, 115, 146, 383
HaeII	RGCGCY	2 cut(s)	60, 93
HaeIII	GGCC	6 cut(s)	107, 128, 148, 254, 300, 317
HapII	CCGG	5 cut(s)	149, 176, 237, 318, 330
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	3 cut(s)	59, 92, 495
Hin1I	GRCGYC	2 cut(s)	57, 90
Hin1II	CATG	3 cut(s)	88, 136, 475
Hin6I	GCGC	3 cut(s)	57, 90, 493
HinP1I	GCGC	3 cut(s)	57, 90, 493
HinfI	GANTC	3 cut(s)	321, 406, 506
HpaII	CCGG	5 cut(s)	149, 176, 237, 318, 330
HphI	GGTGA	1 cut(s)	365
Hpy188I	TCNGA	1 cut(s)	368
Hpy188III	TCNNGA	2 cut(s)	157, 199
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	3 cut(s)	25, 49, 244
HpyCH4V	TGCA	2 cut(s)	84, 377
HpyF10VI	GCNNNNNNNGC	7 cut(s)	54, 65, 120, 151, 306, 335, 388
Hsp92I	GRCGYC	2 cut(s)	57, 90
Hsp92II	CATG	3 cut(s)	88, 136, 475
HspAI	GCGC	3 cut(s)	57, 90, 493
KasI	GGCGCC	2 cut(s)	56, 89
Kzo9I	GATC	5 cut(s)	168, 201, 459, 463, 477
LmnI	GCTCC	2 cut(s)	40, 151
Lsp1109I	GCAGC	2 cut(s)	77, 394
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	526
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	5 cut(s)	170, 203, 461, 465, 479
MbiI	CCGCTC	2 cut(s)	35, 114
MboI	GATC	5 cut(s)	168, 201, 459, 463, 477
MboII	GAAGA	2 cut(s)	34, 67
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	156, 198
Mly113I	GGCGCC	2 cut(s)	57, 90
MlyI	GAGTC	2 cut(s)	315, 515
MnlI	CCTC	4 cut(s)	62, 80, 139, 425
MseI	TTAA	2 cut(s)	243, 500
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	5 cut(s)	149, 176, 237, 318, 330
MspR9I	CCNGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	7 cut(s)	54, 65, 120, 151, 306, 335, 388
NarI	GGCGCC	2 cut(s)	57, 90
NciI	CCSGG	1 cut(s)	238
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	5 cut(s)	168, 201, 459, 463, 477
NlaIII	CATG	3 cut(s)	88, 136, 475
NlaIV	GGNNCC	2 cut(s)	58, 91
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	353
PaqCI	CACCTGC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	8 cut(s)	23, 61, 64, 67, 94, 116, 147, 384
Ple19I	CGATCG	1 cut(s)	171
PleI	GAGTC	2 cut(s)	315, 514
PluTI	GGCGCC	2 cut(s)	60, 93
PpsI	GAGTC	2 cut(s)	315, 514
Psp124BI	GAGCTC	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	58, 91
PsuI	RGATCY	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	171
RsaI	GTAC	2 cut(s)	103, 235
RsaNI	GTAC	2 cut(s)	102, 234
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	243, 500
SatI	GCNGC	8 cut(s)	22, 60, 63, 66, 93, 115, 146, 383
Sau3AI	GATC	5 cut(s)	168, 201, 459, 463, 477
SchI	GAGTC	2 cut(s)	315, 515
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	156, 198
SetI	ASST	7 cut(s)	17, 156, 223, 364, 373, 393, 433
SfaNI	GCATC	1 cut(s)	132
SfoI	GGCGCC	2 cut(s)	58, 91
SmiMI	CAYNNNNRTG	1 cut(s)	137
SspDI	GGCGCC	2 cut(s)	56, 89
SspMI	CTAG	1 cut(s)	526
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	132
TaqI	TCGA	2 cut(s)	167, 462
TauI	GCSGC	6 cut(s)	24, 62, 65, 95, 117, 148
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	2 cut(s)	243, 500
Tru9I	TTAA	2 cut(s)	243, 500
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	2 cut(s)	65, 382
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	176, 460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XspI	CTAG	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.