Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Forward (+)

59469148 .. 59469477

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33297

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGGCGCGGCGTACTGGACCACCAAGAGTGGCGTGGGCGTGGCCTCGATGGGAGTGATGCGGCAGGAGCTGGTCGTGAAATCGATTGTTCCGGTGGTCATGGCTGGAGTGCTTGGGATCTACGGCCTCATCATAGCTGTGATTATCAGCATCGGGATCAATCCAAAGGCTAAATCTTATTACCTATTGGATGGATATGCTCACTTGTCCTCTGTCCTTACTTGTGGCCTCGCTGGACTTTCCACCGTCGTCATCCCCCCTTCCCTCCTCCGATTCTCAACCTTCGCCGGCGCTCTTGAGAGTTCGAAACAATCTTGCGGAATTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022613 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042254 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C RBFA

Protein Analysis

109

Amino Acids

11.19

Weight (kDa)

9.3

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	1 - 49	4.8e-10	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AciI	CCGC	3 cut(s)	8, 61, 318
AclWI	GGATC	2 cut(s)	125, 164
AfaI	GTAC	1 cut(s)	14
AluBI	AGCT	2 cut(s)	70, 137
AluI	AGCT	2 cut(s)	70, 137
AlwI	GGATC	2 cut(s)	125, 164
AlwNI	CAGNNNCTG	1 cut(s)	70
AoxI	GGCC	3 cut(s)	42, 124, 226
AspLEI	GCGC	2 cut(s)	8, 293
AspS9I	GGNCC	1 cut(s)	18
AsuII	TTCGAA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	18
BccI	CCATC	2 cut(s)	43, 185
BceAI	ACGGC	1 cut(s)	139
BfoI	RGCGCY	1 cut(s)	294
BisI	GCNGC	2 cut(s)	9, 62
BlsI	GCNGC	2 cut(s)	10, 63
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmsI	GCATC	2 cut(s)	48, 159
BpmI	CTGGAG	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	20
BseCI	ATCGAT	1 cut(s)	83
BseGI	GGATG	2 cut(s)	196, 252
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	3 cut(s)	44, 126, 228
BshVI	ATCGAT	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	92, 288
BsnI	GGCC	3 cut(s)	44, 126, 228
Bsp119I	TTCGAA	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	117, 156
BspACI	CCGC	3 cut(s)	8, 61, 318
BspANI	GGCC	3 cut(s)	44, 126, 228
BspDI	ATCGAT	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	8
BspPI	GGATC	2 cut(s)	125, 164
BspT104I	TTCGAA	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	287
BssMI	GATC	2 cut(s)	117, 156
Bst4CI	ACNGT	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	196, 252
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	2 cut(s)	8, 293
BstKTI	GATC	2 cut(s)	120, 159
BstMBI	GATC	2 cut(s)	117, 156
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstUI	CGCG	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	3 cut(s)	44, 126, 228
BsuTUI	ATCGAT	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	196, 252
Cac8I	GCNNGC	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	70
CfoI	GCGC	2 cut(s)	8, 293
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	7 cut(s)	44, 70, 104, 126, 137, 170, 228
CviKI_1	RGCY	7 cut(s)	44, 70, 104, 126, 137, 170, 228
CviQI	GTAC	1 cut(s)	13
DpnI	GATC	2 cut(s)	119, 158
DpnII	GATC	2 cut(s)	117, 156
Eco47I	GGWCC	1 cut(s)	18
FaeI	CATG	1 cut(s)	103
FaiI	YATR	3 cut(s)	101, 134, 198
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	9, 62
FokI	GGATG	2 cut(s)	203, 239
Fsp4HI	GCNGC	2 cut(s)	9, 62
GlaI	GCGC	2 cut(s)	7, 292
GluI	GCNGC	2 cut(s)	9, 62
GsuI	CTGGAG	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	44, 126, 228
HapII	CCGG	2 cut(s)	92, 288
HhaI	GCGC	2 cut(s)	8, 293
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	2 cut(s)	6, 291
HinP1I	GCGC	2 cut(s)	6, 291
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	2 cut(s)	92, 288
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	3 cut(s)	76, 154, 296
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	270, 292
HpyCH4III	ACNGT	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	2 cut(s)	6, 291
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	117, 156
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	6 cut(s)	50, 56, 90, 105, 219, 301
LweI	GCATC	2 cut(s)	48, 159
MalI	GATC	2 cut(s)	119, 158
MboI	GATC	2 cut(s)	117, 156
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	1 cut(s)	321
MnlI	CCTC	6 cut(s)	55, 137, 220, 239, 275, 278
MreI	CGCCGGCG	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	2 cut(s)	92, 288
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	67
NaeI	GCCGGC	1 cut(s)	289
NdeII	GATC	2 cut(s)	117, 156
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	1 cut(s)	103
NspV	TTCGAA	1 cut(s)	305
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	10, 63
PspPI	GGNCC	1 cut(s)	18
PstNI	CAGNNNCTG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	137
SatI	GCNGC	2 cut(s)	9, 62
Sau3AI	GATC	2 cut(s)	117, 156
Sau96I	GGNCC	1 cut(s)	18
SetI	ASST	4 cut(s)	72, 139, 186, 284
SfaNI	GCATC	2 cut(s)	48, 159
SfuI	TTCGAA	1 cut(s)	305
SgrAI	CRCCGGYG	1 cut(s)	287
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	3 cut(s)	8, 61, 318
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	3 cut(s)	47, 83, 305
TasI	AATT	1 cut(s)	321
TauI	GCSGC	2 cut(s)	11, 64
TfiI	GAWTC	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.