Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Forward (+)

7455537 .. 7456692

Gene Structure 1156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011186

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTTCTTCAACGTTCAGCGGCGATGAAACGGCACCGTTCTTCGGCTTTCTCGGCGCCGCCGCGGCCCTCGTCTTCTCCTGTATGGGAGCTGCGTACGGAACGGCGAAGAGTGGAGTAGGAGTGGCGTCGATGGGAGTGATGCGGCCGGAGCTGGTCATGAAGTCGATCGTTCCGGTGGTCATGGCCGGAGTGTTGGGAATTTACGGCCTTATTATCGCCGTCATCATTAGTACCGGTATCAACCCTAAGGCCAAATCCTATTACCTGTTTGATGGTTATGCTCATCTCTCGTCTGGTCTGGCCTGTGGCCTTGCTGGGCTCTCAGCTGGTATGGCTATTGGCATTGTTGGTGATGCTGGTGTTAGAGCTAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATCCTCATTCTCATTTTTGCTGAAGCCCTTGCTCTGTATGGCCTCATTGTTGGCATCATTCTTTCCTCCCGAGCAGGTCAGTCAAGAGCCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

167

Amino Acids

16.72

Weight (kDa)

8.62

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	18 - 77	3.9e-15	ATP synthase subunit C
ATP-synt_C	PF00137	98 - 156	3.1e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	470
AccB1I	GGYRCC	2 cut(s)	34, 56
AccII	CGCG	1 cut(s)	65
AciI	CCGC	5 cut(s)	21, 60, 63, 65, 145
AclI	AACGTT	1 cut(s)	14
AclWI	GGATC	1 cut(s)	400
AcoI	YGGCCR	2 cut(s)	146, 186
AcsI	RAATTY	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	2 cut(s)	57, 128
AfaI	GTAC	2 cut(s)	98, 235
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	12
AluBI	AGCT	5 cut(s)	92, 154, 329, 371, 391
AluI	AGCT	5 cut(s)	92, 154, 329, 371, 391
AlwI	GGATC	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	8 cut(s)	66, 146, 186, 208, 252, 303, 310, 445
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	201
AsiGI	ACCGGT	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	474
AxyI	CCTNAGG	1 cut(s)	249
BanI	GGYRCC	2 cut(s)	34, 56
BanII	GRGCYC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	127, 269
BceAI	ACGGC	4 cut(s)	48, 120, 206, 223
BfaI	CTAG	1 cut(s)	499
BfoI	RGCGCY	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	470
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	6 cut(s)	22, 60, 63, 66, 93, 146
BlsI	GCNGC	6 cut(s)	23, 61, 64, 67, 94, 147
BmeT110I	CYCGRG	1 cut(s)	474
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	2 cut(s)	36, 58
BmsI	GCATC	3 cut(s)	132, 346, 468
BpiI	GAAGAC	1 cut(s)	67
BsaHI	GRCGYC	2 cut(s)	57, 128
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	2 cut(s)	175, 236
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	236
Bse21I	CCTNAGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	339
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	2 cut(s)	149, 171
BshFI	GGCC	8 cut(s)	68, 148, 188, 210, 254, 305, 312, 447
BshNI	GGYRCC	2 cut(s)	34, 56
BshTI	ACCGGT	1 cut(s)	236
BsiEI	CGRYCG	2 cut(s)	149, 171
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	4 cut(s)	149, 176, 189, 237
BsiWI	CGTACG	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	44
BsnI	GGCC	8 cut(s)	68, 148, 188, 210, 254, 305, 312, 447
BsoBI	CYCGRG	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	168, 405
BspACI	CCGC	5 cut(s)	21, 60, 63, 65, 145
BspANI	GGCC	8 cut(s)	68, 148, 188, 210, 254, 305, 312, 447
BspCNI	CTCAG	1 cut(s)	338
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	36, 58
BspMI	ACCTGC	1 cut(s)	470
BspPI	GGATC	1 cut(s)	400
BspT107I	GGYRCC	2 cut(s)	34, 56
BsrFI	RCCGGY	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	168, 405
BssNI	GRCGYC	2 cut(s)	57, 128
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	2 cut(s)	57, 128
BstDEI	CTNAG	2 cut(s)	249, 325
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	408
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	171, 408
BstMBI	GATC	2 cut(s)	168, 405
BstMCI	CGRYCG	2 cut(s)	149, 171
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 65, 151, 335
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	67
BstZI	CGGCCG	1 cut(s)	146
Bsu36I	CCTNAGG	1 cut(s)	249
BsuRI	GGCC	8 cut(s)	68, 148, 188, 210, 254, 305, 312, 447
BtgI	CCRYGG	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	470
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	67
Cfr42I	CCGCGG	1 cut(s)	66
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	97, 234
CspAI	ACCGGT	1 cut(s)	236
CviAII	CATG	2 cut(s)	160, 184
CviQI	GTAC	2 cut(s)	97, 234
DdeI	CTNAG	2 cut(s)	249, 325
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	2 cut(s)	170, 407
DpnII	GATC	2 cut(s)	168, 405
EaeI	YGGCCR	2 cut(s)	146, 186
EagI	CGGCCG	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EclXI	CGGCCG	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	324
Eco52I	CGGCCG	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	447
Eco81I	CCTNAGG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	324
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
FaeI	CATG	2 cut(s)	163, 187
FaiI	YATR	6 cut(s)	86, 161, 185, 282, 335, 444
FatI	CATG	2 cut(s)	159, 183
Fnu4HI	GCNGC	6 cut(s)	22, 60, 63, 66, 93, 146
FokI	GGATG	1 cut(s)	415
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	6 cut(s)	22, 60, 63, 66, 93, 146
FspBI	CTAG	1 cut(s)	499
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	6 cut(s)	22, 60, 63, 66, 93, 146
GsaI	CCCAGC	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	8 cut(s)	68, 148, 188, 210, 254, 305, 312, 447
HapII	CCGG	4 cut(s)	149, 176, 189, 237
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	2 cut(s)	57, 128
Hin1II	CATG	2 cut(s)	163, 187
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	389
HpaII	CCGG	4 cut(s)	149, 176, 189, 237
HphI	GGTGA	1 cut(s)	365
Hpy188III	TCNNGA	3 cut(s)	160, 474, 489
Hpy99I	CGWCG	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 65, 151, 335
HpyF3I	CTNAG	2 cut(s)	249, 325
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	2 cut(s)	57, 128
Hsp92II	CATG	2 cut(s)	163, 187
HspAI	GCGC	1 cut(s)	57
KasI	GGCGCC	1 cut(s)	56
KspI	CCGCGG	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	168, 405
LmnI	GCTCC	2 cut(s)	89, 151
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	3 cut(s)	132, 346, 468
MaeI	CTAG	1 cut(s)	499
MaeII	ACGT	1 cut(s)	14
MalI	GATC	2 cut(s)	170, 407
MboI	GATC	2 cut(s)	168, 405
MboII	GAAGA	3 cut(s)	34, 67, 121
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	1 cut(s)	201
Mly113I	GGCGCC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	80, 419, 458, 481
MspA1I	CMGCKG	3 cut(s)	21, 65, 329
MspI	CCGG	4 cut(s)	149, 176, 189, 237
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	4 cut(s)	54, 65, 151, 335
NarI	GGCGCC	1 cut(s)	57
NdeII	GATC	2 cut(s)	168, 405
NlaIII	CATG	2 cut(s)	163, 187
NlaIV	GGNNCC	2 cut(s)	36, 58
NmeAIII	GCCGAG	1 cut(s)	33
PagI	TCATGA	1 cut(s)	159
Pfl23II	CGTACG	1 cut(s)	96
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	6 cut(s)	23, 61, 64, 67, 94, 147
Ple19I	CGATCG	1 cut(s)	171
PluTI	GGCGCC	1 cut(s)	60
Psp1406I	AACGTT	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	317
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	36, 58
PspPI	GGNCC	1 cut(s)	67
PvuI	CGATCG	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	98, 235
RsaNI	GTAC	2 cut(s)	97, 234
SacII	CCGCGG	1 cut(s)	66
SatI	GCNGC	6 cut(s)	22, 60, 63, 66, 93, 146
Sau3AI	GATC	2 cut(s)	168, 405
Sau96I	GGNCC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	8 cut(s)	17, 94, 156, 270, 331, 373, 393, 484
SfaNI	GCATC	3 cut(s)	132, 346, 468
SfoI	GGCGCC	1 cut(s)	58
Sfr303I	CCGCGG	1 cut(s)	66
SgrBI	CCGCGG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	5 cut(s)	21, 60, 63, 65, 145
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	2 cut(s)	131, 167
TasI	AATT	1 cut(s)	201
TauI	GCSGC	5 cut(s)	24, 62, 65, 68, 148
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	42, 176
TspGWI	ACGGA	1 cut(s)	114
XapI	RAATTY	1 cut(s)	201
XspI	CTAG	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.