Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Forward (+)

67438977 .. 67445394

Gene Structure 6418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG478700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGGGACGCAAATTTCACGCCCTAAACAACTGGACCGACCCTGAGACTCCTCCCCTGATTGCACCATCCCCTCATCCACCTTTCCCTTTTCAGCCGCGCATGGGCGCGGCATACTGGTTCGCCAAGAGTGGCGTGGGCGTGGCCTCGATGGGAGTGATGCCGCAGGAGCTGGTCATGAAATCGATTGTTCCGGTGGTCATAGCTAGAGTGCTTGGGATCTACGGCCTCAACATAGCTGTGATTATCAGCATCGGGATCAATCCAAAGGCTAAATCTTATTACCTGTTTGATGGATATGCTCACTTGTCCTATGTCCTTACTTGTGGCCTCGCTGGACTTTCCACCGTCGTCATCCCCCCTTCCCTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022613 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042254 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C RBFA

Protein Analysis

124

Amino Acids

13.29

Weight (kDa)

9.42

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	35 - 83	3.6e-07	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	100, 110
AciI	CCGC	4 cut(s)	5, 98, 110, 164
AclWI	GGATC	2 cut(s)	227, 266
AcsI	RAATTY	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	104
AluBI	AGCT	3 cut(s)	172, 206, 239
AluI	AGCT	3 cut(s)	172, 206, 239
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	2 cut(s)	227, 266
AlwNI	CAGNNNCTG	1 cut(s)	172
AoxI	GGCC	3 cut(s)	144, 226, 328
ApoI	RAATTY	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	102, 110
AspS9I	GGNCC	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	36
BccI	CCATC	3 cut(s)	76, 145, 287
BceAI	ACGGC	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	3 cut(s)	98, 111, 164
BlsI	GCNGC	3 cut(s)	99, 112, 165
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmsI	GCATC	2 cut(s)	150, 261
Bsa29I	ATCGAT	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	38, 122
BseCI	ATCGAT	1 cut(s)	185
BseGI	GGATG	3 cut(s)	68, 76, 354
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	38, 122
BseRI	GAGGAG	2 cut(s)	42, 359
Bsh1236I	CGCG	2 cut(s)	100, 110
BshFI	GGCC	3 cut(s)	146, 228, 330
BshVI	ATCGAT	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	3 cut(s)	146, 228, 330
Bsp143I	GATC	2 cut(s)	219, 258
BspACI	CCGC	4 cut(s)	5, 98, 110, 164
BspANI	GGCC	3 cut(s)	146, 228, 330
BspCNI	CTCAG	1 cut(s)	37
BspDI	ATCGAT	1 cut(s)	185
BspFNI	CGCG	2 cut(s)	100, 110
BspHI	TCATGA	1 cut(s)	177
BspPI	GGATC	2 cut(s)	227, 266
BsrI	ACTGG	2 cut(s)	38, 122
BssMI	GATC	2 cut(s)	219, 258
Bst4CI	ACNGT	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	3 cut(s)	68, 76, 354
BstFNI	CGCG	2 cut(s)	100, 110
BstHHI	GCGC	2 cut(s)	102, 110
BstKTI	GATC	2 cut(s)	222, 261
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	219, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstUI	CGCG	2 cut(s)	100, 110
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
Bsu15I	ATCGAT	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	146, 228, 330
BsuTUI	ATCGAT	1 cut(s)	185
BtsCI	GGATG	3 cut(s)	68, 76, 354
CaiI	CAGNNNCTG	1 cut(s)	172
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	2 cut(s)	102, 110
Cfr13I	GGNCC	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	185
CseI	GACGC	1 cut(s)	18
CviAII	CATG	2 cut(s)	103, 178
CviJI	RGCY	8 cut(s)	97, 146, 172, 206, 228, 239, 272, 330
CviKI_1	RGCY	8 cut(s)	97, 146, 172, 206, 228, 239, 272, 330
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	2 cut(s)	221, 260
DpnII	GATC	2 cut(s)	219, 258
Eco47I	GGWCC	1 cut(s)	36
FaeI	CATG	2 cut(s)	106, 181
FaiI	YATR	7 cut(s)	104, 115, 179, 203, 236, 300, 315
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	102, 177
Fnu4HI	GCNGC	3 cut(s)	98, 111, 164
FokI	GGATG	3 cut(s)	55, 63, 341
Fsp4HI	GCNGC	3 cut(s)	98, 111, 164
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	2 cut(s)	101, 109
GluI	GCNGC	3 cut(s)	98, 111, 164
HaeIII	GGCC	3 cut(s)	146, 228, 330
HapII	CCGG	1 cut(s)	194
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	2 cut(s)	102, 110
Hin1II	CATG	2 cut(s)	106, 181
Hin6I	GCGC	2 cut(s)	100, 108
HinP1I	GCGC	2 cut(s)	100, 108
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	374
Hpy188III	TCNNGA	2 cut(s)	178, 256
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	106, 181
HspAI	GCGC	2 cut(s)	100, 108
Kzo9I	GATC	2 cut(s)	219, 258
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	9 cut(s)	19, 57, 71, 103, 152, 158, 207, 299, 321
LweI	GCATC	2 cut(s)	150, 261
MaeI	CTAG	1 cut(s)	207
MalI	GATC	2 cut(s)	221, 260
MboI	GATC	2 cut(s)	219, 258
MflI	RGATCY	1 cut(s)	219
MluCI	AATT	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	5 cut(s)	63, 84, 157, 239, 341
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	1 cut(s)	194
MvnI	CGCG	2 cut(s)	100, 110
MwoI	GCNNNNNNNGC	1 cut(s)	169
NdeII	GATC	2 cut(s)	219, 258
NlaIII	CATG	2 cut(s)	106, 181
PagI	TCATGA	1 cut(s)	177
PkrI	GCNGC	3 cut(s)	99, 112, 165
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	239
SatI	GCNGC	3 cut(s)	98, 111, 164
Sau3AI	GATC	2 cut(s)	219, 258
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	43
SetI	ASST	5 cut(s)	85, 174, 208, 241, 288
SfaNI	GCATC	2 cut(s)	150, 261
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	14
SsiI	CCGC	4 cut(s)	5, 98, 110, 164
SspMI	CTAG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	149, 185
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	1 cut(s)	14
TauI	GCSGC	3 cut(s)	100, 113, 166
TspDTI	ATGAA	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.