Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Forward (+)

11500631 .. 11502184

Gene Structure 1554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG134900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTCATCCACCACCTTCAGCGGAGATGAAACGGCACCGTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTAGTTTTCTCCTGTATGGGCGCGGCTTACGGAACGGCGAAGAGCGGCGTCGGAGTGGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTGCCGGTGGTTATGGCGGGAGTGTTGGGTATTTATGGTTTGATCATTGCTGTGATCATAAGTACGGGGATTAATCCAAAGGCCAAGTCTTATTATCTTTTTGACGGCTATGCACATCTCTCTTCCGGTCTTGCTTGCGGCCTCGCCGGCCTTTCTGCCGGAATGGCCATCGGGATCGTTGGTGATGCCGGTGTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

123

Amino Acids

12.22

Weight (kDa)

7.77

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	18 - 77	2e-15	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	34, 56
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	92
AciI	CCGC	8 cut(s)	21, 60, 63, 66, 92, 114, 188, 309
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	336
AcyI	GRCGYC	3 cut(s)	57, 117, 128
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	44, 366
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	5 cut(s)	146, 252, 310, 319, 336
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AseI	ATTAAT	1 cut(s)	243
AspLEI	GCGC	2 cut(s)	59, 92
AsuHPI	GGTGA	2 cut(s)	169, 365
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	34, 56
BccI	CCATC	2 cut(s)	127, 347
BceAI	ACGGC	3 cut(s)	48, 120, 292
BclI	TGATCA	2 cut(s)	213, 225
BfaI	CTAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	60
BglI	GCCNNNNNGGC	2 cut(s)	318, 335
BisI	GCNGC	6 cut(s)	60, 63, 66, 93, 115, 310
BlsI	GCNGC	6 cut(s)	61, 64, 67, 94, 116, 311
BmiI	GGNNCC	2 cut(s)	36, 58
BmsI	GCATC	1 cut(s)	346
BsaHI	GRCGYC	3 cut(s)	57, 117, 128
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 366
Bse118I	RCCGGY	3 cut(s)	175, 317, 359
Bse3DI	GCAATG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	2 cut(s)	44, 366
BseMI	GCAATG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	5 cut(s)	148, 254, 312, 321, 338
BshNI	GGYRCC	2 cut(s)	34, 56
BsiSI	CCGG	6 cut(s)	149, 176, 297, 318, 330, 360
BslI	CCNNNNNNNGG	2 cut(s)	44, 366
BsnI	GGCC	5 cut(s)	148, 254, 312, 321, 338
Bsp143I	GATC	3 cut(s)	213, 225, 345
BspACI	CCGC	8 cut(s)	21, 60, 63, 66, 92, 114, 188, 309
BspANI	GGCC	5 cut(s)	148, 254, 312, 321, 338
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	36, 58
BspPI	GGATC	1 cut(s)	353
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	2 cut(s)	34, 56
BsrBI	CCGCTC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	3 cut(s)	175, 317, 359
BssAI	RCCGGY	3 cut(s)	175, 317, 359
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	213, 225, 345
BssNI	GRCGYC	3 cut(s)	57, 117, 128
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	2 cut(s)	104, 298
BstACI	GRCGYC	3 cut(s)	57, 117, 128
BstC8I	GCNNGC	2 cut(s)	307, 319
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	59, 92
BstKTI	GATC	3 cut(s)	216, 228, 348
BstMBI	GATC	3 cut(s)	213, 225, 345
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 65, 318, 335
BstUI	CGCG	1 cut(s)	92
BsuRI	GGCC	5 cut(s)	148, 254, 312, 321, 338
BtsCI	GGATG	1 cut(s)	5
Cac8I	GCNNGC	2 cut(s)	307, 319
CfoI	GCGC	2 cut(s)	59, 92
Cfr10I	RCCGGY	3 cut(s)	175, 317, 359
CseI	GACGC	2 cut(s)	106, 117
Csp6I	GTAC	1 cut(s)	234
CviJI	RGCY	9 cut(s)	48, 95, 148, 154, 254, 279, 312, 321, 338
CviKI_1	RGCY	9 cut(s)	48, 95, 148, 154, 254, 279, 312, 321, 338
CviQI	GTAC	1 cut(s)	234
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	3 cut(s)	215, 227, 347
DpnII	GATC	3 cut(s)	213, 225, 345
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	2 cut(s)	104, 298
EarI	CTCTTC	2 cut(s)	104, 298
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
FaiI	YATR	5 cut(s)	86, 185, 207, 230, 282
FauI	CCCGC	1 cut(s)	181
FbaI	TGATCA	2 cut(s)	213, 225
Fnu4HI	GCNGC	6 cut(s)	60, 63, 66, 93, 115, 310
Fsp4HI	GCNGC	6 cut(s)	60, 63, 66, 93, 115, 310
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	2 cut(s)	58, 91
GluI	GCNGC	6 cut(s)	60, 63, 66, 93, 115, 310
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	5 cut(s)	148, 254, 312, 321, 338
HapII	CCGG	6 cut(s)	149, 176, 297, 318, 330, 360
HgaI	GACGC	2 cut(s)	106, 117
HhaI	GCGC	2 cut(s)	59, 92
Hin1I	GRCGYC	3 cut(s)	57, 117, 128
Hin6I	GCGC	2 cut(s)	57, 90
HinP1I	GCGC	2 cut(s)	57, 90
HpaII	CCGG	6 cut(s)	149, 176, 297, 318, 330, 360
HphI	GGTGA	2 cut(s)	169, 365
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	1 cut(s)	343
Hpy99I	CGWCG	2 cut(s)	122, 133
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 65, 318, 335
Hsp92I	GRCGYC	3 cut(s)	57, 117, 128
HspAI	GCGC	2 cut(s)	57, 90
KasI	GGCGCC	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
Ksp22I	TGATCA	2 cut(s)	213, 225
Kzo9I	GATC	3 cut(s)	213, 225, 345
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	7 cut(s)	94, 140, 162, 189, 310, 331, 343
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	71
MalI	GATC	3 cut(s)	215, 227, 347
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	3 cut(s)	213, 225, 345
MboII	GAAGA	3 cut(s)	34, 121, 285
MlsI	TGGCCA	1 cut(s)	338
MluNI	TGGCCA	1 cut(s)	338
Mly113I	GGCGCC	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	3 cut(s)	62, 138, 323
Mox20I	TGGCCA	1 cut(s)	338
MroNI	GCCGGC	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	6 cut(s)	149, 176, 297, 318, 330, 360
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	4 cut(s)	54, 65, 318, 335
NaeI	GCCGGC	1 cut(s)	319
NarI	GGCGCC	1 cut(s)	57
NdeII	GATC	3 cut(s)	213, 225, 345
NgoMIV	GCCGGC	1 cut(s)	317
NlaIV	GGNNCC	2 cut(s)	36, 58
NmeAIII	GCCGAG	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	104
PdiI	GCCGGC	1 cut(s)	319
PkrI	GCNGC	6 cut(s)	61, 64, 67, 94, 116, 311
PluTI	GGCGCC	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	36, 58
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	6 cut(s)	60, 63, 66, 93, 115, 310
Sau3AI	GATC	3 cut(s)	213, 225, 345
SetI	ASST	3 cut(s)	17, 156, 371
SfaNI	GCATC	1 cut(s)	346
SfiI	GGCCNNNNNGGCC	1 cut(s)	318
SfoI	GGCGCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	221
SsiI	CCGC	8 cut(s)	21, 60, 63, 66, 92, 114, 188, 309
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	131, 167
TauI	GCSGC	6 cut(s)	62, 65, 68, 95, 117, 312
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TspDTI	ATGAA	2 cut(s)	42, 176
TspGWI	ACGGA	1 cut(s)	114
VspI	ATTAAT	1 cut(s)	243
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.