Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Reverse (-)

12334491 .. 12336490

Gene Structure 2000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTTCTTCTACTTTCAGCGGCGACGAGACCGCTCCCTTCTTCGGCTTCCTCGGCGCCGCCGCAGCTCTCGTCTTCTCCTGCATGGGCGCGGCGTACGGGACCGCCAAGAGTGGCGTGGGCGTCGCCTCGATGGGAGTGATGCGGCCGGAGCTGGTCATGAAATCGATCGTTCCGGTGGTCATGGCCGGAGTGCTTGGGATCTACGGCCTCATCATAGCTGTGATTATCAGCACCGGGATCAACCCAAAGGCCAAATCTTATTACCTGTTTGATGGATATGCTCACTTGTCCTCTGGCCTTGCTTGTGGCCTCGCTGGGCTTTCCGCCGGAATGGCCATCGGGATCGTCGGTGACGCCGGTGTCCGTTTGATAGACATGATGATTATTTCTGCAACTACATGGAATGCTGAGATGCCATATTTATGTAGGGCTAATGCACAGCAGCCAAAGCTCTTTGTTGGCATGATCCTTATCCTCATCTTTGCTGAAGCTCTTGCTTTGTACGGTCTCATTGTTGGGATTATCCTCTCGTCCCGAGCAGGGCAATCTCGCGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

187

Amino Acids

19.17

Weight (kDa)

7.68

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	18 - 77	5e-15	ATP synthase subunit C
ATP-synt_C	PF00137	142 - 177	1.8e-10	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	35
AccII	CGCG	2 cut(s)	92, 555
AciI	CCGC	8 cut(s)	21, 33, 60, 63, 92, 105, 145, 327
AclWI	GGATC	4 cut(s)	209, 248, 353, 463
AcoI	YGGCCR	3 cut(s)	146, 186, 336
AcuI	CTGAAG	1 cut(s)	510
AcyI	GRCGYC	3 cut(s)	57, 123, 357
AfaI	GTAC	2 cut(s)	98, 506
AfiI	CCNNNNNNNGG	2 cut(s)	44, 543
AluBI	AGCT	5 cut(s)	68, 154, 221, 454, 494
AluI	AGCT	5 cut(s)	68, 154, 221, 454, 494
Alw26I	GTCTC	2 cut(s)	23, 515
AlwI	GGATC	4 cut(s)	209, 248, 353, 463
Ama87I	CYCGRG	1 cut(s)	537
AoxI	GGCC	7 cut(s)	146, 186, 208, 252, 298, 310, 336
ApeKI	GCWGC	2 cut(s)	65, 445
AspLEI	GCGC	3 cut(s)	59, 92, 557
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	537
AvaII	GGWCC	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	77, 457
BccI	CCATC	3 cut(s)	127, 269, 347
BceAI	ACGGC	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	23, 515
BfoI	RGCGCY	1 cut(s)	60
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 446
BlsI	GCNGC	7 cut(s)	23, 61, 64, 67, 94, 147, 447
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	537
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	58, 103
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	2 cut(s)	132, 405
BpiI	GAAGAC	1 cut(s)	67
BpuMI	CCSGG	1 cut(s)	238
Bsa29I	ATCGAT	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	473
BsaHI	GRCGYC	3 cut(s)	57, 123, 357
BsaI	GGTCTC	2 cut(s)	23, 515
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 543
Bse118I	RCCGGY	1 cut(s)	359
Bse8I	GATNNNNATC	1 cut(s)	473
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	2 cut(s)	44, 543
BseMII	CTCAG	1 cut(s)	402
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	77, 457
BseYI	CCCAGC	1 cut(s)	317
Bsh1236I	CGCG	2 cut(s)	92, 555
Bsh1285I	CGRYCG	2 cut(s)	149, 171
BshFI	GGCC	7 cut(s)	148, 188, 210, 254, 300, 312, 338
BshNI	GGYRCC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	167
BsiEI	CGRYCG	2 cut(s)	149, 171
BsiHKCI	CYCGRG	1 cut(s)	537
BsiSI	CCGG	6 cut(s)	149, 176, 189, 237, 330, 360
BsiWI	CGTACG	1 cut(s)	96
BslFI	GGGAC	2 cut(s)	115, 520
BslI	CCNNNNNNNGG	2 cut(s)	44, 543
BsmAI	GTCTC	2 cut(s)	23, 515
BsmFI	GGGAC	2 cut(s)	115, 520
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	7 cut(s)	148, 188, 210, 254, 300, 312, 338
Bso31I	GGTCTC	2 cut(s)	23, 515
BsoBI	CYCGRG	1 cut(s)	537
Bsp143I	GATC	5 cut(s)	168, 201, 240, 345, 468
BspACI	CCGC	8 cut(s)	21, 33, 60, 63, 92, 105, 145, 327
BspANI	GGCC	7 cut(s)	148, 188, 210, 254, 300, 312, 338
BspCNI	CTCAG	1 cut(s)	403
BspDI	ATCGAT	1 cut(s)	167
BspFNI	CGCG	2 cut(s)	92, 555
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	58, 103
BspPI	GGATC	4 cut(s)	209, 248, 353, 463
BspT107I	GGYRCC	1 cut(s)	56
BspTNI	GGTCTC	2 cut(s)	23, 515
BsrBI	CCGCTC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	5 cut(s)	168, 201, 240, 345, 468
BssNI	GRCGYC	3 cut(s)	57, 123, 357
Bst4CI	ACNGT	1 cut(s)	509
BstACI	GRCGYC	3 cut(s)	57, 123, 357
BstDEI	CTNAG	1 cut(s)	411
BstFNI	CGCG	2 cut(s)	92, 555
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	3 cut(s)	59, 92, 557
BstKTI	GATC	5 cut(s)	171, 204, 243, 348, 471
BstMAI	GTCTC	2 cut(s)	23, 515
BstMBI	GATC	5 cut(s)	168, 201, 240, 345, 468
BstMCI	CGRYCG	2 cut(s)	149, 171
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 65, 151, 335, 451
BstSCI	CCNGG	1 cut(s)	236
BstUI	CGCG	2 cut(s)	92, 555
BstV1I	GCAGC	2 cut(s)	77, 457
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BstZI	CGGCCG	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	167
BsuRI	GGCC	7 cut(s)	148, 188, 210, 254, 300, 312, 338
BsuTUI	ATCGAT	1 cut(s)	167
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	3 cut(s)	59, 92, 557
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	167
CseI	GACGC	2 cut(s)	112, 365
Csp6I	GTAC	2 cut(s)	97, 505
CviAII	CATG	6 cut(s)	85, 160, 184, 379, 402, 466
CviQI	GTAC	2 cut(s)	97, 505
DdeI	CTNAG	1 cut(s)	411
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	5 cut(s)	170, 203, 242, 347, 470
DpnII	GATC	5 cut(s)	168, 201, 240, 345, 468
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	3 cut(s)	146, 186, 336
EagI	CGGCCG	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	316
EclXI	CGGCCG	1 cut(s)	146
Eco31I	GGTCTC	2 cut(s)	23, 515
Eco47I	GGWCC	1 cut(s)	102
Eco52I	CGGCCG	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	537
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
FaeI	CATG	6 cut(s)	88, 163, 187, 382, 405, 469
FaqI	GGGAC	2 cut(s)	115, 520
FatI	CATG	6 cut(s)	84, 159, 183, 378, 401, 465
Fnu4HI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 446
Fsp4HI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 446
GlaI	GCGC	3 cut(s)	58, 91, 556
GluI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 446
GsaI	CCCAGC	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	7 cut(s)	148, 188, 210, 254, 300, 312, 338
HapII	CCGG	6 cut(s)	149, 176, 189, 237, 330, 360
HgaI	GACGC	2 cut(s)	112, 365
HhaI	GCGC	3 cut(s)	59, 92, 557
Hin1I	GRCGYC	3 cut(s)	57, 123, 357
Hin1II	CATG	6 cut(s)	88, 163, 187, 382, 405, 469
Hin6I	GCGC	3 cut(s)	57, 90, 555
HinP1I	GCGC	3 cut(s)	57, 90, 555
HpaII	CCGG	6 cut(s)	149, 176, 189, 237, 330, 360
HphI	GGTGA	1 cut(s)	365
Hpy188III	TCNNGA	3 cut(s)	160, 343, 537
Hpy99I	CGWCG	3 cut(s)	29, 128, 353
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4V	TGCA	3 cut(s)	84, 395, 440
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 65, 151, 335, 451
HpyF3I	CTNAG	1 cut(s)	411
Hsp92I	GRCGYC	3 cut(s)	57, 123, 357
Hsp92II	CATG	6 cut(s)	88, 163, 187, 382, 405, 469
HspAI	GCGC	3 cut(s)	57, 90, 555
KasI	GGCGCC	1 cut(s)	56
Kzo9I	GATC	5 cut(s)	168, 201, 240, 345, 468
LmnI	GCTCC	2 cut(s)	40, 151
Lsp1109I	GCAGC	2 cut(s)	77, 457
LweI	GCATC	2 cut(s)	132, 405
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	5 cut(s)	170, 203, 242, 347, 470
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	5 cut(s)	168, 201, 240, 345, 468
MboII	GAAGA	2 cut(s)	34, 67
MflI	RGATCY	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	338
MluNI	TGGCCA	1 cut(s)	338
Mly113I	GGCGCC	1 cut(s)	57
MnlI	CCTC	7 cut(s)	62, 139, 221, 304, 323, 488, 539
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MslI	CAYNNNNRTG	2 cut(s)	221, 424
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	6 cut(s)	149, 176, 189, 237, 330, 360
MspR9I	CCNGG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	412
MvnI	CGCG	2 cut(s)	92, 555
MwoI	GCNNNNNNNGC	5 cut(s)	54, 65, 151, 335, 451
NarI	GGCGCC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	5 cut(s)	168, 201, 240, 345, 468
NlaIII	CATG	6 cut(s)	88, 163, 187, 382, 405, 469
NlaIV	GGNNCC	2 cut(s)	58, 103
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	353
PagI	TCATGA	1 cut(s)	159
PctI	GAATGC	1 cut(s)	412
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	7 cut(s)	23, 61, 64, 67, 94, 147, 447
Ple19I	CGATCG	1 cut(s)	171
PluTI	GGCGCC	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	317
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	58, 103
PspPI	GGNCC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	171
RsaI	GTAC	2 cut(s)	98, 506
RsaNI	GTAC	2 cut(s)	97, 505
RseI	CAYNNNNRTG	2 cut(s)	221, 424
SatI	GCNGC	7 cut(s)	22, 60, 63, 66, 93, 146, 446
Sau3AI	GATC	5 cut(s)	168, 201, 240, 345, 468
Sau96I	GGNCC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	238
SetI	ASST	6 cut(s)	70, 156, 223, 270, 456, 496
SfaNI	GCATC	2 cut(s)	132, 405
SfoI	GGCGCC	1 cut(s)	58
SgrAI	CRCCGGYG	1 cut(s)	359
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	2 cut(s)	221, 424
SsiI	CCGC	8 cut(s)	21, 33, 60, 63, 92, 105, 145, 327
SspDI	GGCGCC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	509
TaqI	TCGA	2 cut(s)	131, 167
TauI	GCSGC	5 cut(s)	24, 62, 65, 95, 148
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	2 cut(s)	65, 445
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.