Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Reverse (-)

25003111 .. 25005693

Gene Structure 2583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG160100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCTTCTACCTTCAGCGGCGATGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCTGCGGCCCTCGTTTTCTCCTGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGGGTAGGTGTTGCATCTATGGGAGTCATGAGGCCTGAGCTGGTCATGAAATCCATTGTTCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGCTTATTATTGCTGTTATCATCAGTACCGGGATTAATCCCAAGGCAAAGTCATATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCTTGCGGTCTTGCGGGGCTCTCCGCTGGAATGGCAATTGGTATTGTTGGTGATGCTGGTGTGAGGTATTATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

125

Amino Acids

12.56

Weight (kDa)

7.75

Isoelectric Point (pI)

30.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	17 - 76	2e-15	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	31, 53
AciI	CCGC	6 cut(s)	18, 57, 62, 306, 314, 324
AcyI	GRCGYC	2 cut(s)	32, 54
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	41
AluBI	AGCT	2 cut(s)	89, 151
AluI	AGCT	2 cut(s)	89, 151
Alw26I	GTCTC	1 cut(s)	20
AoxI	GGCC	2 cut(s)	63, 143
ApeKI	GCWGC	2 cut(s)	59, 89
AseI	ATTAAT	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	34, 56
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	362
BanI	GGYRCC	2 cut(s)	31, 53
BanII	GRGCYC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	46, 76
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	20
BfoI	RGCGCY	2 cut(s)	35, 57
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	5 cut(s)	19, 57, 60, 63, 90
BlsI	GCNGC	5 cut(s)	20, 58, 61, 64, 91
Bme1390I	CCNGG	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	33, 55
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	134, 343
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	235
BsaHI	GRCGYC	2 cut(s)	32, 54
BsaJI	CCNNGG	2 cut(s)	49, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	49, 246
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	280
BseXI	GCAGC	2 cut(s)	46, 76
BshFI	GGCC	2 cut(s)	65, 145
BshNI	GGYRCC	2 cut(s)	31, 53
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	20
BsmBI	CGTCTC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	65, 145
Bsp1286I	GDGCHC	1 cut(s)	321
BspACI	CCGC	6 cut(s)	18, 57, 62, 306, 314, 324
BspANI	GGCC	2 cut(s)	65, 145
BspCNI	CTCAG	1 cut(s)	139
BspHI	TCATGA	2 cut(s)	138, 156
BspLI	GGNNCC	2 cut(s)	33, 55
BspT107I	GGYRCC	2 cut(s)	31, 53
BssECI	CCNNGG	2 cut(s)	49, 246
BssNI	GRCGYC	2 cut(s)	32, 54
BssT1I	CCWWGG	1 cut(s)	246
BstACI	GRCGYC	2 cut(s)	32, 54
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	147
BstH2I	RGCGCY	2 cut(s)	35, 57
BstHHI	GCGC	2 cut(s)	34, 56
BstMAI	GTCTC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 62, 332
BstSCI	CCNGG	1 cut(s)	233
BstV1I	GCAGC	2 cut(s)	46, 76
BsuRI	GGCC	2 cut(s)	65, 145
BtgZI	GCGATG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	304
CciI	TCATGA	2 cut(s)	138, 156
CfoI	GCGC	2 cut(s)	34, 56
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	2 cut(s)	139, 157
CviJI	RGCY	8 cut(s)	45, 65, 89, 145, 151, 185, 208, 319
CviKI_1	RGCY	8 cut(s)	45, 65, 89, 145, 151, 185, 208, 319
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	147
DinI	GGCGCC	2 cut(s)	33, 55
Eco130I	CCWWGG	1 cut(s)	246
Eco147I	AGGCCT	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	321
EgeI	GGCGCC	2 cut(s)	33, 55
EheI	GGCGCC	2 cut(s)	33, 55
ErhI	CCWWGG	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	2 cut(s)	142, 160
FaiI	YATR	9 cut(s)	83, 96, 131, 140, 158, 182, 204, 259, 279
FatI	CATG	2 cut(s)	138, 156
FauI	CCCGC	1 cut(s)	307
Fnu4HI	GCNGC	5 cut(s)	19, 57, 60, 63, 90
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	5 cut(s)	19, 57, 60, 63, 90
GlaI	GCGC	2 cut(s)	33, 55
GluI	GCNGC	5 cut(s)	19, 57, 60, 63, 90
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	2 cut(s)	35, 57
HaeIII	GGCC	2 cut(s)	65, 145
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	2 cut(s)	34, 56
Hin1I	GRCGYC	2 cut(s)	32, 54
Hin1II	CATG	2 cut(s)	142, 160
Hin6I	GCGC	2 cut(s)	32, 54
HinP1I	GCGC	2 cut(s)	32, 54
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	362
Hpy188III	TCNNGA	2 cut(s)	139, 157
HpyAV	CCTTC	2 cut(s)	22, 46
HpyCH4V	TGCA	2 cut(s)	125, 281
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 62, 332
HpyF3I	CTNAG	1 cut(s)	147
Hsp92I	GRCGYC	2 cut(s)	32, 54
Hsp92II	CATG	2 cut(s)	142, 160
HspAI	GCGC	2 cut(s)	32, 54
KasI	GGCGCC	2 cut(s)	31, 53
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	9 cut(s)	91, 137, 159, 171, 186, 247, 279, 312, 342
Lsp1109I	GCAGC	2 cut(s)	46, 76
LweI	GCATC	2 cut(s)	134, 343
MboII	GAAGA	1 cut(s)	31
MfeI	CAATTG	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	1 cut(s)	336
Mly113I	GGCGCC	2 cut(s)	32, 54
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	6 cut(s)	59, 77, 135, 275, 301, 357
MseI	TTAA	1 cut(s)	240
MspA1I	CMGCKG	3 cut(s)	18, 59, 326
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	235
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	51, 62, 332
NarI	GGCGCC	2 cut(s)	32, 54
NciI	CCSGG	1 cut(s)	235
NlaIII	CATG	2 cut(s)	142, 160
NlaIV	GGNNCC	2 cut(s)	33, 55
NmeAIII	GCCGAG	1 cut(s)	30
PagI	TCATGA	2 cut(s)	138, 156
PceI	AGGCCT	1 cut(s)	145
PkrI	GCNGC	5 cut(s)	20, 58, 61, 64, 91
PleI	GAGTC	1 cut(s)	143
PluTI	GGCGCC	2 cut(s)	35, 57
PpsI	GAGTC	1 cut(s)	143
PshBI	ATTAAT	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	33, 55
PspPI	GGNCC	1 cut(s)	64
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	5 cut(s)	19, 57, 60, 63, 90
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	6 cut(s)	14, 91, 121, 153, 267, 368
SfaNI	GCATC	2 cut(s)	134, 343
SfoI	GGCGCC	2 cut(s)	33, 55
Sse9I	AATT	1 cut(s)	336
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	6 cut(s)	18, 57, 62, 306, 314, 324
SspDI	GGCGCC	2 cut(s)	31, 53
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	246
TasI	AATT	1 cut(s)	336
TauI	GCSGC	3 cut(s)	21, 59, 65
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	2 cut(s)	59, 89
TspDTI	ATGAA	1 cut(s)	173
VspI	ATTAAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.