Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Forward (+)

11125391 .. 11126411

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016905

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCATCCACCACCTTCAGCGGAGATGAAACGGCACCGTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTAGTTTTCTCCTGTATGGGCGCGGCTTACGGGACGGCGAAGAGCGGCGTCGGAGTGGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTGCCGGTGGTTATGGCGGGAGTGTTGGGTATTTATGGTTTGATCATTGCTGTGATCATAAGTACGGGGATTAATCCAAAGGCCAAGTCTTATTATCTCTTCGACGGCTATGCACATCTCTCTTCCGGTCTTGCTTGCGGCCTCGCCGGCCTTTCTGCCGGAATGGCTATCGGAATCGTTGGTGATGCCGGTGTTAGAGCTAATGCACAGCAGCCAAAGCTTTTCGTTGGAATGATCCTCATTCTCATTTTTGCTGAAGCGTTGGCTTTGTATGGTCTGATCGTTGGTATCATCCTTTCATCCCGAGCTGGGCAGTCCAGAGCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

167

Amino Acids

16.75

Weight (kDa)

8.62

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	18 - 77	3.9e-15	ATP synthase subunit C
ATP-synt_C	PF00137	98 - 156	3.1e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	34, 56
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	92
AciI	CCGC	8 cut(s)	21, 60, 63, 66, 92, 114, 188, 309
AclWI	GGATC	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	3 cut(s)	57, 117, 128
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	44, 480
AluBI	AGCT	4 cut(s)	154, 371, 391, 479
AluI	AGCT	4 cut(s)	154, 371, 391, 479
AlwI	GGATC	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	4 cut(s)	146, 252, 310, 319
ApeKI	GCWGC	1 cut(s)	382
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AseI	ATTAAT	1 cut(s)	243
AspLEI	GCGC	2 cut(s)	59, 92
AsuHPI	GGTGA	2 cut(s)	169, 365
AvaI	CYCGRG	1 cut(s)	474
BanI	GGYRCC	2 cut(s)	34, 56
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	3 cut(s)	48, 120, 292
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BclI	TGATCA	2 cut(s)	213, 225
BfaI	CTAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	60
BglI	GCCNNNNNGGC	2 cut(s)	318, 335
BisI	GCNGC	7 cut(s)	60, 63, 66, 93, 115, 310, 383
BlsI	GCNGC	7 cut(s)	61, 64, 67, 94, 116, 311, 384
BmeT110I	CYCGRG	1 cut(s)	474
BmiI	GGNNCC	2 cut(s)	36, 58
BmsI	GCATC	1 cut(s)	346
BsaHI	GRCGYC	3 cut(s)	57, 117, 128
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 480
Bse118I	RCCGGY	3 cut(s)	175, 317, 359
Bse3DI	GCAATG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	3 cut(s)	5, 462, 470
BseLI	CCNNNNNNNGG	2 cut(s)	44, 480
BseMI	GCAATG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	394
BseYI	CCCAGC	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	4 cut(s)	148, 254, 312, 321
BshNI	GGYRCC	2 cut(s)	34, 56
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	6 cut(s)	149, 176, 297, 318, 330, 360
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	44, 480
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	4 cut(s)	148, 254, 312, 321
BsoBI	CYCGRG	1 cut(s)	474
Bsp143I	GATC	4 cut(s)	213, 225, 405, 450
BspACI	CCGC	8 cut(s)	21, 60, 63, 66, 92, 114, 188, 309
BspANI	GGCC	4 cut(s)	148, 254, 312, 321
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	36, 58
BspPI	GGATC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	2 cut(s)	34, 56
BsrBI	CCGCTC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	3 cut(s)	175, 317, 359
BssAI	RCCGGY	3 cut(s)	175, 317, 359
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	4 cut(s)	213, 225, 405, 450
BssNI	GRCGYC	3 cut(s)	57, 117, 128
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	3 cut(s)	104, 275, 298
BstACI	GRCGYC	3 cut(s)	57, 117, 128
BstC8I	GCNNGC	2 cut(s)	307, 319
BstF5I	GGATG	3 cut(s)	5, 462, 470
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	59, 92
BstKTI	GATC	4 cut(s)	216, 228, 408, 453
BstMBI	GATC	4 cut(s)	213, 225, 405, 450
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 65, 318, 335, 388
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	394
BsuRI	GGCC	4 cut(s)	148, 254, 312, 321
BtsCI	GGATG	3 cut(s)	5, 462, 470
Cac8I	GCNNGC	2 cut(s)	307, 319
CfoI	GCGC	2 cut(s)	59, 92
Cfr10I	RCCGGY	3 cut(s)	175, 317, 359
CseI	GACGC	2 cut(s)	106, 117
Csp6I	GTAC	1 cut(s)	234
CviQI	GTAC	1 cut(s)	234
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	4 cut(s)	215, 227, 407, 452
DpnII	GATC	4 cut(s)	213, 225, 405, 450
Eam1104I	CTCTTC	3 cut(s)	104, 275, 298
EarI	CTCTTC	3 cut(s)	104, 275, 298
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	474
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
FaiI	YATR	6 cut(s)	86, 185, 207, 230, 282, 444
FaqI	GGGAC	1 cut(s)	115
FauI	CCCGC	1 cut(s)	181
FbaI	TGATCA	2 cut(s)	213, 225
Fnu4HI	GCNGC	7 cut(s)	60, 63, 66, 93, 115, 310, 383
FokI	GGATG	2 cut(s)	449, 457
Fsp4HI	GCNGC	7 cut(s)	60, 63, 66, 93, 115, 310, 383
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	2 cut(s)	58, 91
GluI	GCNGC	7 cut(s)	60, 63, 66, 93, 115, 310, 383
GsaI	CCCAGC	1 cut(s)	483
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	4 cut(s)	148, 254, 312, 321
HapII	CCGG	6 cut(s)	149, 176, 297, 318, 330, 360
HgaI	GACGC	2 cut(s)	106, 117
HhaI	GCGC	2 cut(s)	59, 92
Hin1I	GRCGYC	3 cut(s)	57, 117, 128
Hin6I	GCGC	2 cut(s)	57, 90
HinP1I	GCGC	2 cut(s)	57, 90
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	1 cut(s)	345
HpaII	CCGG	6 cut(s)	149, 176, 297, 318, 330, 360
HphI	GGTGA	2 cut(s)	169, 365
Hpy188I	TCNGA	3 cut(s)	122, 344, 450
Hpy188III	TCNNGA	2 cut(s)	474, 489
Hpy99I	CGWCG	3 cut(s)	122, 133, 278
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	284, 377
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 65, 318, 335, 388
Hsp92I	GRCGYC	3 cut(s)	57, 117, 128
HspAI	GCGC	2 cut(s)	57, 90
KasI	GGCGCC	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
Ksp22I	TGATCA	2 cut(s)	213, 225
Kzo9I	GATC	4 cut(s)	213, 225, 405, 450
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	9 cut(s)	94, 140, 162, 189, 310, 331, 343, 373, 465
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	71
MalI	GATC	4 cut(s)	215, 227, 407, 452
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	4 cut(s)	213, 225, 405, 450
MboII	GAAGA	4 cut(s)	34, 121, 262, 285
Mly113I	GGCGCC	1 cut(s)	57
MmeI	TCCRAC	2 cut(s)	100, 379
MnlI	CCTC	4 cut(s)	62, 138, 323, 419
MroNI	GCCGGC	1 cut(s)	317
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	6 cut(s)	149, 176, 297, 318, 330, 360
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	5 cut(s)	54, 65, 318, 335, 388
NaeI	GCCGGC	1 cut(s)	319
NarI	GGCGCC	1 cut(s)	57
NdeII	GATC	4 cut(s)	213, 225, 405, 450
NgoMIV	GCCGGC	1 cut(s)	317
NlaIV	GGNNCC	2 cut(s)	36, 58
NmeAIII	GCCGAG	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	104
PdiI	GCCGGC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	345
PkrI	GCNGC	7 cut(s)	61, 64, 67, 94, 116, 311, 384
PluTI	GGCGCC	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	36, 58
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	7 cut(s)	60, 63, 66, 93, 115, 310, 383
Sau3AI	GATC	4 cut(s)	213, 225, 405, 450
SetI	ASST	5 cut(s)	17, 156, 373, 393, 481
SfaNI	GCATC	1 cut(s)	346
SfiI	GGCCNNNNNGGCC	1 cut(s)	318
SfoI	GGCGCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	221
SsiI	CCGC	8 cut(s)	21, 60, 63, 66, 92, 114, 188, 309
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	39
TaqI	TCGA	3 cut(s)	131, 167, 273
TauI	GCSGC	6 cut(s)	62, 65, 68, 95, 117, 312
TfiI	GAWTC	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseI	GCWGC	1 cut(s)	382
TspDTI	ATGAA	3 cut(s)	42, 176, 459
VspI	ATTAAT	1 cut(s)	243
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.