Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Reverse (-)

69490495 .. 69490830

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG387600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGCGCGGCGTACTGGACCGCCAAGAGTGGCGTGGGCGTGGCCTTGATGAAAGTGATGCGGCAGGAGCTAGTCATGAAATCGATTGTTCCGGTGGTCATGGCTGGAGTGCTTGGGATCTACGGCCTCATCATAGCTGTGATTATCAGCACCGGGATCAATCCAAAGGCTAAATCTTATTACCTGTTTGATGGATATGCTCACTTGTCCTCTGTCCTTACTTGTAGCCTCGCTGGACTTTCCACCGTCGTCATCCCCCCTTCCCTCCTCCGATACTCAACCTTCACCGTCGCCGGCTCTCTTGGGAGTTCGAAACGATCTCGCGGAATTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022613 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042254 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C RBFA

Protein Analysis

111

Amino Acids

11.59

Weight (kDa)

10.01

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	1 - 49	1.3e-09	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	8, 324
AciI	CCGC	4 cut(s)	8, 21, 61, 324
AclWI	GGATC	2 cut(s)	125, 164
AfaI	GTAC	1 cut(s)	14
AluBI	AGCT	2 cut(s)	70, 137
AluI	AGCT	2 cut(s)	70, 137
AlwI	GGATC	2 cut(s)	125, 164
AoxI	GGCC	2 cut(s)	42, 124
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	18
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	277
AsuII	TTCGAA	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	18
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	154
BfaI	CTAG	1 cut(s)	71
BisI	GCNGC	2 cut(s)	9, 62
BlsI	GCNGC	2 cut(s)	10, 63
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	154
Bsa29I	ATCGAT	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	20
BseCI	ATCGAT	1 cut(s)	83
BseGI	GGATG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	257
Bsh1236I	CGCG	2 cut(s)	8, 324
BshFI	GGCC	2 cut(s)	44, 126
BshVI	ATCGAT	1 cut(s)	83
BsiSI	CCGG	3 cut(s)	92, 153, 294
BsnI	GGCC	2 cut(s)	44, 126
Bsp119I	TTCGAA	1 cut(s)	311
Bsp143I	GATC	3 cut(s)	117, 156, 317
BspACI	CCGC	4 cut(s)	8, 21, 61, 324
BspANI	GGCC	2 cut(s)	44, 126
BspDI	ATCGAT	1 cut(s)	83
BspFNI	CGCG	2 cut(s)	8, 324
BspHI	TCATGA	1 cut(s)	75
BspPI	GGATC	2 cut(s)	125, 164
BspT104I	TTCGAA	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	293
BssMI	GATC	3 cut(s)	117, 156, 317
Bst4CI	ACNGT	2 cut(s)	247, 289
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	2 cut(s)	8, 324
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	3 cut(s)	120, 159, 320
BstMBI	GATC	3 cut(s)	117, 156, 317
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	152
BstUI	CGCG	2 cut(s)	8, 324
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	44, 126
BsuTUI	ATCGAT	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	295
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	1 cut(s)	8
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	76, 100
CviJI	RGCY	8 cut(s)	44, 70, 104, 126, 137, 170, 228, 297
CviKI_1	RGCY	8 cut(s)	44, 70, 104, 126, 137, 170, 228, 297
CviQI	GTAC	1 cut(s)	13
DpnI	GATC	3 cut(s)	119, 158, 319
DpnII	GATC	3 cut(s)	117, 156, 317
Eco47I	GGWCC	1 cut(s)	18
FaeI	CATG	2 cut(s)	79, 103
FaiI	YATR	4 cut(s)	77, 101, 134, 198
FatI	CATG	2 cut(s)	75, 99
Fnu4HI	GCNGC	2 cut(s)	9, 62
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	9, 62
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	2 cut(s)	9, 62
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	44, 126
HapII	CCGG	3 cut(s)	92, 153, 294
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	79, 103
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HpaII	CCGG	3 cut(s)	92, 153, 294
HphI	GGTGA	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	1 cut(s)	76
Hpy99I	CGWCG	2 cut(s)	251, 293
HpyAV	CCTTC	2 cut(s)	270, 292
HpyCH4III	ACNGT	2 cut(s)	247, 289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	79, 103
HspAI	GCGC	1 cut(s)	6
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	117, 156, 317
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	7 cut(s)	50, 90, 105, 166, 197, 219, 307
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	1 cut(s)	71
MalI	GATC	3 cut(s)	119, 158, 319
MboI	GATC	3 cut(s)	117, 156, 317
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	1 cut(s)	327
MnlI	CCTC	5 cut(s)	137, 220, 239, 275, 278
MroNI	GCCGGC	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	3 cut(s)	92, 153, 294
MspR9I	CCNGG	1 cut(s)	154
MvnI	CGCG	2 cut(s)	8, 324
MwoI	GCNNNNNNNGC	1 cut(s)	67
NaeI	GCCGGC	1 cut(s)	295
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	3 cut(s)	117, 156, 317
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	2 cut(s)	79, 103
NspV	TTCGAA	1 cut(s)	311
PagI	TCATGA	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	10, 63
PspPI	GGNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	137
SatI	GCNGC	2 cut(s)	9, 62
Sau3AI	GATC	3 cut(s)	117, 156, 317
Sau96I	GGNCC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	4 cut(s)	72, 139, 186, 284
SfaNI	GCATC	1 cut(s)	48
SfuI	TTCGAA	1 cut(s)	311
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	327
SsiI	CCGC	4 cut(s)	8, 21, 61, 324
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	2 cut(s)	247, 289
TaqI	TCGA	2 cut(s)	83, 311
TasI	AATT	1 cut(s)	327
TauI	GCSGC	2 cut(s)	11, 64
TspDTI	ATGAA	2 cut(s)	65, 92
VpaK11BI	GGWCC	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.