Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Reverse (-)

6598264 .. 6602337

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0082000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGAAATCCGAAGCAAAAATGGACGTCGGAGGAAGAAGAGGCGCTCCGAGCCGGCGTCAGAAAGCACGGCACCGGAAAGTGGAAGGATATCCAGAAAGACCCCGAGTTCAACCCCTTCCTCTCCTCTCGCTCCAATATTGATCTCAAGGACAAATGGCGGAATATGTCTGTTAGTGGCGTGGGGGGTCCCAGAGAAAAAGCAAGGATGAGACCAAGAGATAGTCCTGTTACTCTATTCTCCACCCCACAGCCTTCTGCTGCTGCTCCTGTTAAACGTGACCCAGCTGCAGCTCTTCTCAAACGTGAGTCATCAGCAGCTCCTGTCAAACGCGAGGCAGCAGCATCTCTTGTCAAAGGCGAGCCAGTGGCAGATGATTCCCCAACAGAAGCAAAAACTGAAGCAAAAACAGCTCCAATGTACAATGCAATGATTTTTGAAGCACTTTCTAACTCAACAGATCCAAATGGATTGGAGACTGGTGCTATTGCTAATTTTATTGAGCAAAGGTATGTTTTGGAGAAAAAGAATGAGGTGCCCCAAAATTTTAGAAGGTTATTGAGCTCAAGGTTAAGAAGGCTGGTTGCACAAGAAAAACTTGAAAAGTTTCAAAATTGCTTCAAGATAAAAAGTGACTCGTCAGGTGAGACAAAAGCACCACCGCCCCCAAAACAGAATGATGCACCACTGGCCCCAAACGCCCCAAAACAGAATGACACACCAGCGGCCCCAAAACAGAATGATGTCCAACTTACGCAATTGCAGAGTCATGCTGATGTAATCCCCTATGAAACAGTTGAGGAAGCGGCAGTGGCTGCTGCCTACAAGATTGCCGAAGCAGAAAACAAATCATTTGTCGCTGCAGAAGCAGTGAAAGAGTCGGAGAGGGTTTCACAGATGTTCGAAGACACAAACTCAGTGCTCCAGTTGGCAGAAGAGTTTCTTAAGAAATGTTCGCAAGGTGAAGTTCTTCTGGTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

327

Amino Acids

35.98

Weight (kDa)

8.33

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 56	5.2e-09	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	8 - 56	2.7e-06	Myb-like DNA-binding domain
Linker_histone	PF00538	139 - 204	3e-08	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	29
AccB1I	GGYRCC	2 cut(s)	71, 535
AccII	CGCG	1 cut(s)	333
AciI	CCGC	4 cut(s)	160, 662, 725, 806
AclWI	GGATC	1 cut(s)	455
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	2 cut(s)	26, 57
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflII	CTTAAG	1 cut(s)	944
AgsI	TTSAA	5 cut(s)	112, 440, 602, 611, 622
AluBI	AGCT	5 cut(s)	287, 293, 320, 413, 564
AluI	AGCT	5 cut(s)	287, 293, 320, 413, 564
Alw21I	GWGCWC	2 cut(s)	566, 924
Alw26I	GTCTC	3 cut(s)	205, 470, 641
AlwI	GGATC	1 cut(s)	455
AlwNI	CAGNNNCTG	2 cut(s)	323, 815
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	690, 726
ApoI	RAATTY	1 cut(s)	544
ArsI	GACNNNNNNTTYG	2 cut(s)	840, 872
Asp700I	GAANNNNTTC	3 cut(s)	606, 939, 969
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	3 cut(s)	188, 691, 727
AsuHPI	GGTGA	2 cut(s)	656, 974
AsuII	TTCGAA	1 cut(s)	903
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	188
BaeGI	GKGCMC	1 cut(s)	540
BanI	GGYRCC	2 cut(s)	71, 535
BanII	GRGCYC	1 cut(s)	566
BbsI	GAAGAC	1 cut(s)	912
Bbv12I	GWGCWC	2 cut(s)	566, 924
BceAI	ACGGC	1 cut(s)	85
BcoDI	GTCTC	3 cut(s)	205, 470, 641
BfmI	CTRYAG	2 cut(s)	288, 861
BfoI	RGCGCY	1 cut(s)	47
BfrI	CTTAAG	1 cut(s)	944
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	3 cut(s)	188, 691, 727
BmiI	GGNNCC	6 cut(s)	73, 189, 190, 537, 693, 729
BmsI	GCATC	2 cut(s)	353, 670
BpiI	GAAGAC	1 cut(s)	912
BpmI	CTGGAG	1 cut(s)	908
Bpu14I	TTCGAA	1 cut(s)	903
BpuEI	CTTGAG	2 cut(s)	131, 550
BsaHI	GRCGYC	2 cut(s)	26, 57
BsaI	GGTCTC	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	4 cut(s)	365, 484, 693, 925
Bse3DI	GCAATG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	930
BseNI	ACTGG	4 cut(s)	365, 484, 693, 925
BseRI	GAGGAG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	540
BseYI	CCCAGC	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	2 cut(s)	692, 728
BshNI	GGYRCC	2 cut(s)	71, 535
BsiHKAI	GWGCWC	2 cut(s)	566, 924
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	54, 75
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	3 cut(s)	205, 470, 641
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	692, 728
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	903
Bsp1286I	GDGCHC	3 cut(s)	540, 566, 924
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	142, 460
BspACI	CCGC	4 cut(s)	160, 662, 725, 806
BspANI	GGCC	2 cut(s)	692, 728
BspCNI	CTCAG	1 cut(s)	929
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	6 cut(s)	73, 189, 190, 537, 693, 729
BspMAI	CTGCAG	2 cut(s)	292, 865
BspPI	GGATC	1 cut(s)	455
BspQI	GCTCTTC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	903
BspT107I	GGYRCC	2 cut(s)	71, 535
BspTI	CTTAAG	1 cut(s)	944
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	435
BsrFI	RCCGGY	1 cut(s)	53
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	4 cut(s)	365, 484, 693, 925
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	2 cut(s)	142, 460
BssNI	GRCGYC	2 cut(s)	26, 57
Bst4CI	ACNGT	1 cut(s)	796
Bst6I	CTCTTC	3 cut(s)	33, 300, 930
BstACI	GRCGYC	2 cut(s)	26, 57
BstAFI	CTTAAG	1 cut(s)	944
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstAUI	TGTACA	1 cut(s)	420
BstBI	TTCGAA	1 cut(s)	903
BstC8I	GCNNGC	2 cut(s)	55, 362
BstDEI	CTNAG	1 cut(s)	916
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	333
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	2 cut(s)	145, 463
BstMAI	GTCTC	3 cut(s)	205, 470, 641
BstMBI	GATC	2 cut(s)	142, 460
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 410, 689, 698, 812, 815, 866
BstSFI	CTRYAG	2 cut(s)	288, 861
BstSLI	GKGCMC	1 cut(s)	540
BstUI	CGCG	1 cut(s)	333
BstV2I	GAAGAC	1 cut(s)	912
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	692, 728
BtsCI	GGATG	1 cut(s)	213
BtsI	GCAGTG	2 cut(s)	816, 876
BtsIMutI	CAGTG	5 cut(s)	372, 686, 816, 876, 924
Cac8I	GCNNGC	2 cut(s)	55, 362
CaiI	CAGNNNCTG	2 cut(s)	323, 815
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	188, 691, 727
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	1 cut(s)	770
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	1 cut(s)	916
DpnI	GATC	2 cut(s)	144, 462
DpnII	GATC	2 cut(s)	142, 460
Eam1104I	CTCTTC	3 cut(s)	33, 300, 930
EarI	CTCTTC	3 cut(s)	33, 300, 930
EciI	GGCGGA	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	566
Eco31I	GGTCTC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	564
Eco57I	CTGAAG	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	564
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	566
FaeI	CATG	1 cut(s)	773
FaiI	YATR	4 cut(s)	167, 513, 771, 789
FalI	AAGNNNNNCTT	4 cut(s)	582, 614, 927, 959
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	1 cut(s)	769
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	566
GlaI	GCGC	1 cut(s)	45
GsaI	CCCAGC	1 cut(s)	287
GsuI	CTGGAG	1 cut(s)	908
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	692, 728
HapII	CCGG	2 cut(s)	54, 75
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	2 cut(s)	26, 57
Hin1II	CATG	1 cut(s)	773
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	5 cut(s)	308, 377, 635, 766, 878
HpaII	CCGG	2 cut(s)	54, 75
HphI	GGTGA	2 cut(s)	656, 974
Hpy188I	TCNGA	5 cut(s)	12, 31, 50, 62, 883
Hpy188III	TCNNGA	2 cut(s)	94, 622
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	5 cut(s)	79, 127, 264, 546, 570
HpyCH4III	ACNGT	1 cut(s)	796
HpyCH4IV	ACGT	3 cut(s)	26, 277, 304
HpyCH4V	TGCA	6 cut(s)	290, 428, 587, 683, 763, 863
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 410, 689, 698, 812, 815, 866
HpyF3I	CTNAG	1 cut(s)	916
HpySE526I	ACGT	3 cut(s)	26, 277, 304
Hsp92I	GRCGYC	2 cut(s)	26, 57
Hsp92II	CATG	1 cut(s)	773
HspAI	GCGC	1 cut(s)	44
KflI	GGGWCCC	1 cut(s)	188
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	142, 460
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	6 cut(s)	51, 137, 271, 325, 418, 927
LweI	GCATC	2 cut(s)	353, 670
MaeII	ACGT	3 cut(s)	26, 277, 304
MaeIII	GTNAC	3 cut(s)	229, 278, 632
MalI	GATC	2 cut(s)	144, 462
MboI	GATC	2 cut(s)	142, 460
MboII	GAAGA	6 cut(s)	47, 50, 287, 917, 947, 962
MfeI	CAATTG	1 cut(s)	758
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	3 cut(s)	540, 566, 924
MluCI	AATT	4 cut(s)	493, 544, 613, 758
MlyI	GAGTC	4 cut(s)	317, 629, 775, 887
MmeI	TCCRAC	3 cut(s)	9, 772, 861
MnlI	CCTC	8 cut(s)	25, 34, 131, 136, 328, 526, 793, 879
MroNI	GCCGGC	1 cut(s)	53
MroXI	GAANNNNTTC	3 cut(s)	606, 939, 969
MseI	TTAA	3 cut(s)	273, 572, 945
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	2 cut(s)	287, 725
MspCI	CTTAAG	1 cut(s)	944
MspI	CCGG	2 cut(s)	54, 75
MunI	CAATTG	1 cut(s)	758
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	7 cut(s)	50, 410, 689, 698, 812, 815, 866
NaeI	GCCGGC	1 cut(s)	55
NdeII	GATC	2 cut(s)	142, 460
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	773
NlaIV	GGNNCC	6 cut(s)	73, 189, 190, 537, 693, 729
NmuCI	GTSAC	2 cut(s)	278, 632
NspV	TTCGAA	1 cut(s)	903
PciSI	GCTCTTC	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	55
PdmI	GAANNNNTTC	3 cut(s)	606, 939, 969
PfeI	GAWTC	1 cut(s)	377
PleI	GAGTC	4 cut(s)	316, 629, 774, 886
PpsI	GAGTC	4 cut(s)	316, 629, 774, 886
PpuMI	RGGWCCY	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	283
PspN4I	GGNNCC	6 cut(s)	73, 189, 190, 537, 693, 729
PspPI	GGNCC	3 cut(s)	188, 691, 727
PspPPI	RGGWCCY	1 cut(s)	188
PstI	CTGCAG	2 cut(s)	292, 865
PstNI	CAGNNNCTG	2 cut(s)	323, 815
PsuI	RGATCY	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	774
SacI	GAGCTC	1 cut(s)	566
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	273, 572, 945
Sau3AI	GATC	2 cut(s)	142, 460
Sau96I	GGNCC	3 cut(s)	188, 691, 727
SchI	GAGTC	4 cut(s)	317, 629, 775, 887
SduI	GDGCHC	3 cut(s)	540, 566, 924
SfaNI	GCATC	2 cut(s)	353, 670
SfcI	CTRYAG	2 cut(s)	288, 861
SfuI	TTCGAA	1 cut(s)	903
SinI	GGWCC	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	3 cut(s)	146, 565, 944
SmoI	CTYRAG	3 cut(s)	146, 565, 944
Sse9I	AATT	4 cut(s)	493, 544, 613, 758
SsiI	CCGC	4 cut(s)	160, 662, 725, 806
SspI	AATATT	1 cut(s)	139
SstI	GAGCTC	1 cut(s)	566
TaaI	ACNGT	1 cut(s)	796
TaiI	ACGT	3 cut(s)	29, 280, 307
TaqI	TCGA	1 cut(s)	903
TasI	AATT	4 cut(s)	493, 544, 613, 758
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	2 cut(s)	728, 809
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	3 cut(s)	273, 572, 945
Tru9I	TTAA	3 cut(s)	273, 572, 945
TscAI	CASTG	5 cut(s)	372, 693, 816, 876, 924
TseFI	GTSAC	2 cut(s)	278, 632
Tsp45I	GTSAC	2 cut(s)	278, 632
TspDTI	ATGAA	1 cut(s)	804
TspRI	CASTG	5 cut(s)	372, 693, 816, 876, 924
Vha464I	CTTAAG	1 cut(s)	944
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	544
XmnI	GAANNNNTTC	3 cut(s)	606, 939, 969
ZraI	GACGTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.