Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Reverse (-)

35701413 .. 35704100

Gene Structure 2688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGCAGCATTCTCTGCAGCATAAAAAGGAACAATAACGTACGGTGGAAGCTCACTGCCGGCCAGGGGCGGCCCCGAGGGTGTTCAAATGGAGCAGTTGCACAAGGCCTCCGGGTTCCGAAGGCCTCGAATTCAATTTTGACCGGCCCTGCTGCCGGCGATGGTAGAAACCACGTGCCTACACGAGACAGAGGAAGAGGTCACGTGGCTGGAGTGCTTGGGATCTATGGCCTCATCATAGCTGTGATTATCTGCATCGGGATCAATCCAAAGGCTAAATCTTATTACCTGTTTGATGGATATGCTCACTTGTCCTCTGTCCTTACTTGTGGCCTCGCCGAACTTTCCACCGTCGTCATCCCCCCTTCCCTCCTCCGATTCTCAACCTTCACTGTCGCGGCGCTCTTGGGAGTTCGAAACAATCTTGCGGAATTGGGTAGGAGCTTCAAGACAGCCTCTCGTTTCTCTCCATCGCCGAAATCTCCAAAATTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

165

Amino Acids

17.36

Weight (kDa)

10.79

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	398
AciI	CCGC	3 cut(s)	70, 398, 428
AclWI	GGATC	2 cut(s)	230, 269
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	130
AcvI	CACGTG	2 cut(s)	175, 205
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	2 cut(s)	66, 155
AgsI	TTSAA	3 cut(s)	87, 135, 448
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	3 cut(s)	52, 242, 444
AluI	AGCT	3 cut(s)	52, 242, 444
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	230, 269
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	7 cut(s)	61, 71, 106, 123, 145, 229, 331
ApeKI	GCWGC	3 cut(s)	6, 18, 152
ApoI	RAATTY	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	72, 146
AsuC2I	CCSGG	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	415
AvaI	CYCGRG	1 cut(s)	75
BauI	CACGAG	1 cut(s)	183
BbrPI	CACGTG	2 cut(s)	175, 205
BbvI	GCAGC	3 cut(s)	18, 30, 139
BccI	CCATC	3 cut(s)	155, 290, 478
BciT130I	CCWGG	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	16
BfoI	RGCGCY	1 cut(s)	404
BisI	GCNGC	5 cut(s)	7, 19, 71, 153, 399
BlsI	GCNGC	5 cut(s)	8, 20, 72, 154, 400
Bme1390I	CCNGG	2 cut(s)	65, 113
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	72, 146
BmiI	GGNNCC	2 cut(s)	74, 117
BmrFI	CCNGG	2 cut(s)	65, 113
BmsI	GCATC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	113
BsaAI	YACGTR	2 cut(s)	175, 205
BsaJI	CCNNGG	2 cut(s)	64, 76
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 155
Bse118I	RCCGGY	3 cut(s)	59, 143, 155
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	64, 76
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	2 cut(s)	66, 155
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	18, 30, 139
Bsh1236I	CGCG	1 cut(s)	398
BshFI	GGCC	7 cut(s)	63, 73, 108, 125, 147, 231, 333
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	4 cut(s)	60, 112, 144, 156
BsiWI	CGTACG	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	66, 155
BsmAI	GTCTC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	9
BsnI	GGCC	7 cut(s)	63, 73, 108, 125, 147, 231, 333
BsoBI	CYCGRG	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	415
Bsp143I	GATC	2 cut(s)	222, 261
BspACI	CCGC	3 cut(s)	70, 398, 428
BspANI	GGCC	7 cut(s)	63, 73, 108, 125, 147, 231, 333
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	2 cut(s)	74, 117
BspMAI	CTGCAG	1 cut(s)	20
BspPI	GGATC	2 cut(s)	230, 269
BspT104I	TTCGAA	1 cut(s)	415
BsrFI	RCCGGY	3 cut(s)	59, 143, 155
BssAI	RCCGGY	3 cut(s)	59, 143, 155
BssECI	CCNNGG	2 cut(s)	64, 76
BssMI	GATC	2 cut(s)	222, 261
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	3 cut(s)	45, 352, 394
Bst6I	CTCTTC	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	15
BstBAI	YACGTR	2 cut(s)	175, 205
BstBI	TTCGAA	1 cut(s)	415
BstC8I	GCNNGC	2 cut(s)	61, 157
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	2 cut(s)	225, 264
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	2 cut(s)	222, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	63, 111
BstSFI	CTRYAG	1 cut(s)	16
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	3 cut(s)	18, 30, 139
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BsuRI	GGCC	7 cut(s)	63, 73, 108, 125, 147, 231, 333
BtgZI	GCGATG	2 cut(s)	174, 456
BtsCI	GGATG	1 cut(s)	357
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 390
Cac8I	GCNNGC	2 cut(s)	61, 157
CfoI	GCGC	1 cut(s)	403
Cfr10I	RCCGGY	3 cut(s)	59, 143, 155
Cfr13I	GGNCC	2 cut(s)	72, 146
Csp6I	GTAC	1 cut(s)	41
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	2 cut(s)	224, 263
DpnII	GATC	2 cut(s)	222, 261
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco147I	AGGCCT	2 cut(s)	108, 125
Eco72I	CACGTG	2 cut(s)	175, 205
Eco88I	CYCGRG	1 cut(s)	75
EcoRI	GAATTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	63
FaiI	YATR	4 cut(s)	23, 228, 239, 303
Fnu4HI	GCNGC	5 cut(s)	7, 19, 71, 153, 399
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	5 cut(s)	7, 19, 71, 153, 399
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	5 cut(s)	7, 19, 71, 153, 399
GsuI	CTGGAG	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	404
HaeIII	GGCC	7 cut(s)	63, 73, 108, 125, 147, 231, 333
HapII	CCGG	4 cut(s)	60, 112, 144, 156
HhaI	GCGC	1 cut(s)	403
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	1 cut(s)	378
HpaII	CCGG	4 cut(s)	60, 112, 144, 156
Hpy188I	TCNGA	2 cut(s)	120, 377
Hpy188III	TCNNGA	2 cut(s)	259, 448
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	3 cut(s)	115, 375, 397
HpyCH4III	ACNGT	3 cut(s)	45, 352, 394
HpyCH4IV	ACGT	3 cut(s)	39, 174, 204
HpyCH4V	TGCA	3 cut(s)	18, 101, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	3 cut(s)	39, 174, 204
HspAI	GCGC	1 cut(s)	401
KroI	GCCGGC	2 cut(s)	59, 155
KroNI	GCCGGC	2 cut(s)	61, 157
Kzo9I	GATC	2 cut(s)	222, 261
LmnI	GCTCC	2 cut(s)	92, 441
LpnPI	CCDG	9 cut(s)	50, 73, 77, 125, 157, 162, 169, 195, 302
Lsp1109I	GCAGC	3 cut(s)	18, 30, 139
LweI	GCATC	1 cut(s)	264
MaeII	ACGT	3 cut(s)	39, 174, 204
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	2 cut(s)	224, 263
MboI	GATC	2 cut(s)	222, 261
MboII	GAAGA	1 cut(s)	207
MflI	RGATCY	1 cut(s)	222
MluCI	AATT	4 cut(s)	130, 135, 431, 488
MroNI	GCCGGC	2 cut(s)	59, 155
MslI	CAYNNNNRTG	1 cut(s)	242
MspI	CCGG	4 cut(s)	60, 112, 144, 156
MspR9I	CCNGG	2 cut(s)	65, 113
Mva1269I	GAATGC	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	15
NaeI	GCCGGC	2 cut(s)	61, 157
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	222, 261
NgoMIV	GCCGGC	2 cut(s)	59, 155
NlaIV	GGNNCC	2 cut(s)	74, 117
NmuCI	GTSAC	1 cut(s)	200
NspV	TTCGAA	1 cut(s)	415
PceI	AGGCCT	2 cut(s)	108, 125
PctI	GAATGC	1 cut(s)	9
PdiI	GCCGGC	2 cut(s)	61, 157
PfeI	GAWTC	1 cut(s)	378
Pfl23II	CGTACG	1 cut(s)	40
PkrI	GCNGC	5 cut(s)	8, 20, 72, 154, 400
PmaCI	CACGTG	2 cut(s)	175, 205
PmlI	CACGTG	2 cut(s)	175, 205
Ppu21I	YACGTR	2 cut(s)	175, 205
Psp6I	CCWGG	1 cut(s)	63
PspCI	CACGTG	2 cut(s)	175, 205
PspGI	CCWGG	1 cut(s)	63
PspLI	CGTACG	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	74, 117
PspPI	GGNCC	2 cut(s)	72, 146
PstI	CTGCAG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	242
SatI	GCNGC	5 cut(s)	7, 19, 71, 153, 399
Sau3AI	GATC	2 cut(s)	222, 261
Sau96I	GGNCC	2 cut(s)	72, 146
ScrFI	CCNGG	2 cut(s)	65, 113
SetI	ASST	9 cut(s)	42, 54, 177, 202, 207, 244, 291, 389, 446
SfaNI	GCATC	1 cut(s)	264
SfcI	CTRYAG	1 cut(s)	16
SfuI	TTCGAA	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	4 cut(s)	130, 135, 431, 488
SseBI	AGGCCT	2 cut(s)	108, 125
SsiI	CCGC	3 cut(s)	70, 398, 428
StuI	AGGCCT	2 cut(s)	108, 125
StyD4I	CCNGG	2 cut(s)	63, 111
TaaI	ACNGT	3 cut(s)	45, 352, 394
TaiI	ACGT	3 cut(s)	42, 177, 207
TaqI	TCGA	2 cut(s)	128, 415
TasI	AATT	4 cut(s)	130, 135, 431, 488
TauI	GCSGC	2 cut(s)	73, 401
TfiI	GAWTC	1 cut(s)	378
TscAI	CASTG	2 cut(s)	61, 397
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	3 cut(s)	6, 18, 152
Tsp45I	GTSAC	1 cut(s)	200
TspRI	CASTG	2 cut(s)	61, 397
XapI	RAATTY	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.