Rh6CG195500

ATP hydrolysis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001121
Physical Location & Seq
Reverse (-)
32361987 .. 32362259
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG195500.1

Sequence Viewer

Length: 273 bp
ATGGGCGCGGCGTACGAGACCGCCAAGAGTGGCGTGGGCATGGCCTCTATAGGAGTGATGCGGCCGGAGCTGGTCATGAATTCGATCGTTCCGGCGATCATGGCTAGAGTGCTTGGGATCTGCGGCCTCATCATAGTTGTGATTATTAGCATCGGGATGAATCCAAAGGCTAAATCTTATTACCTGTTTGATGGATATGCTCAGTTGTCCTCTAGCCTTGCTTATGGCCTCGCTGGACTTTCCGCCGTCAACATCTTCCCTTCCCTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323
Pfam Domains
Protein Families
ATP-synt_C

Protein Analysis

90

Amino Acids

9.33

Weight (kDa)

8.89

Isoelectric Point (pI)

31.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_C PF00137 1 - 49 5.4e-08 ATP synthase subunit C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 8
AciI CCGC 5 cut(s) 8, 21, 61, 123, 243
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 62
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 14
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 125
AoxI GGCC 4 cut(s) 42, 62, 124, 226
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 1 cut(s) 8
BccI CCATC 1 cut(s) 185
BceAI ACGGC 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 105, 213
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 3 cut(s) 9, 62, 124
BlsI GCNGC 3 cut(s) 10, 63, 125
BmsI GCATC 2 cut(s) 48, 159
BsaI GGTCTC 1 cut(s) 11
BseGI GGATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 257
BseX3I CGGCCG 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 8
Bsh1285I CGRYCG 2 cut(s) 65, 87
BshFI GGCC 4 cut(s) 44, 64, 126, 228
BsiEI CGRYCG 2 cut(s) 65, 87
BsiSI CCGG 2 cut(s) 65, 92
BsiWI CGTACG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 4 cut(s) 44, 64, 126, 228
Bso31I GGTCTC 1 cut(s) 11
Bsp143I GATC 3 cut(s) 84, 96, 117
BspACI CCGC 5 cut(s) 8, 21, 61, 123, 243
BspANI GGCC 4 cut(s) 44, 64, 126, 228
BspCNI CTCAG 1 cut(s) 214
BspFNI CGCG 1 cut(s) 8
BspHI TCATGA 1 cut(s) 75
BspPI GGATC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 11
BssMI GATC 3 cut(s) 84, 96, 117
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 3 cut(s) 87, 99, 120
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 84, 96, 117
BstMCI CGRYCG 2 cut(s) 65, 87
BstMWI GCNNNNNNNGC 2 cut(s) 67, 101
BstSFI CTRYAG 1 cut(s) 48
BstUI CGCG 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BstZI CGGCCG 1 cut(s) 62
BsuRI GGCC 4 cut(s) 44, 64, 126, 228
BtsCI GGATG 1 cut(s) 162
CciI TCATGA 1 cut(s) 75
CfoI GCGC 1 cut(s) 8
Csp6I GTAC 1 cut(s) 13
CviAII CATG 3 cut(s) 40, 76, 100
CviJI RGCY 8 cut(s) 44, 64, 70, 104, 126, 170, 216, 228
CviKI_1 RGCY 8 cut(s) 44, 64, 70, 104, 126, 170, 216, 228
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 201
DpnI GATC 3 cut(s) 86, 98, 119
DpnII GATC 3 cut(s) 84, 96, 117
EaeI YGGCCR 1 cut(s) 62
EagI CGGCCG 1 cut(s) 62
EciI GGCGGA 1 cut(s) 232
EclXI CGGCCG 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 11
Eco52I CGGCCG 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 79
FaeI CATG 3 cut(s) 43, 79, 103
FaiI YATR 7 cut(s) 41, 50, 77, 101, 134, 198, 225
FatI CATG 3 cut(s) 39, 75, 99
Fnu4HI GCNGC 3 cut(s) 9, 62, 124
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 3 cut(s) 9, 62, 124
FspBI CTAG 2 cut(s) 105, 213
GlaI GCGC 1 cut(s) 7
GluI GCNGC 3 cut(s) 9, 62, 124
HaeIII GGCC 4 cut(s) 44, 64, 126, 228
HapII CCGG 2 cut(s) 65, 92
HhaI GCGC 1 cut(s) 8
Hin1II CATG 3 cut(s) 43, 79, 103
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 1 cut(s) 160
HpaII CCGG 2 cut(s) 65, 92
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 2 cut(s) 76, 154
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 101
HpyF3I CTNAG 1 cut(s) 201
Hsp92II CATG 3 cut(s) 43, 79, 103
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 3 cut(s) 84, 96, 117
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 5 cut(s) 56, 78, 105, 197, 219
LweI GCATC 2 cut(s) 48, 159
MaeI CTAG 2 cut(s) 105, 213
MalI GATC 3 cut(s) 86, 98, 119
MboI GATC 3 cut(s) 84, 96, 117
MboII GAAGA 1 cut(s) 247
MflI RGATCY 1 cut(s) 117
MluCI AATT 1 cut(s) 79
MnlI CCTC 4 cut(s) 55, 137, 220, 239
MslI CAYNNNNRTG 2 cut(s) 137, 155
MspI CCGG 2 cut(s) 65, 92
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 67, 101
NdeII GATC 3 cut(s) 84, 96, 117
NlaIII CATG 3 cut(s) 43, 79, 103
PagI TCATGA 1 cut(s) 75
PfeI GAWTC 1 cut(s) 160
Pfl23II CGTACG 1 cut(s) 12
PkrI GCNGC 3 cut(s) 10, 63, 125
Ple19I CGATCG 1 cut(s) 87
PspLI CGTACG 1 cut(s) 12
PsuI RGATCY 1 cut(s) 117
PvuI CGATCG 1 cut(s) 87
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
RseI CAYNNNNRTG 2 cut(s) 137, 155
SatI GCNGC 3 cut(s) 9, 62, 124
Sau3AI GATC 3 cut(s) 84, 96, 117
SetI ASST 2 cut(s) 72, 186
SfaNI GCATC 2 cut(s) 48, 159
SfcI CTRYAG 1 cut(s) 48
SmiMI CAYNNNNRTG 2 cut(s) 137, 155
Sse9I AATT 1 cut(s) 79
SsiI CCGC 5 cut(s) 8, 21, 61, 123, 243
SspMI CTAG 2 cut(s) 105, 213
TaqI TCGA 1 cut(s) 83
TasI AATT 1 cut(s) 79
TauI GCSGC 3 cut(s) 11, 64, 126
TfiI GAWTC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 92, 173
XapI RAATTY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XspI CTAG 2 cut(s) 105, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.