Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Forward (+)

5132794 .. 5133189

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG070500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCTGGAGTGCTTGGGATCTGCGGCCTTATCATAGCTGTGATTATCAGCACCAGGATCAATCCAAAGGCAAAATCTTATTACCTATTTGATGGATATGCTCACTTGTCCTCTGGCCTTGCTTGTGGCCTCGCTGGACTTTCCGCCGTCATCATCCTCCCTTCCCTCCTCCGATTCTCCACCGCCTTCGCTGTCGTCGGCGCTCTTGGGAGTCCGAAACGATCTCACGGAATTGGGCGAGAGCTTCAAGACAGGCCTCTCGTTTCTCTCCGTCGCCGGAACACCAAATTGACTTCGAACTTGATGCCAGTTCGGAATAGAGCTTCGGAAGACGACAACGGCGATTCCGTGCCGGGAATTACCGATGAGATTCTCAGCTTCGTCGTTCAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0006884 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008199 GO:0008361 GO:0009056 GO:0009987 GO:0009992 GO:0016043 GO:0016052 GO:0016234 GO:0016491 GO:0016614 GO:0016616 GO:0016651 GO:0016701 GO:0019310 GO:0019637 GO:0019725 GO:0019751 GO:0019932 GO:0023052 GO:0030104 GO:0032535 GO:0035556 GO:0036094 GO:0042592 GO:0043167 GO:0043169 GO:0043647 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046174 GO:0046872 GO:0046914 GO:0048016 GO:0048037 GO:0048878 GO:0050113 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0055114 GO:0061024 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0097159 GO:1901265 GO:1901363 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00053 ko00190 ko00562 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00053 map00190 map00562 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C MIOX

Protein Analysis

131

Amino Acids

13.92

Weight (kDa)

9.69

Isoelectric Point (pI)

57.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	24, 144, 183
AclWI	GGATC	2 cut(s)	26, 65
AgsI	TTSAA	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	4 cut(s)	38, 244, 323, 378
AluI	AGCT	4 cut(s)	38, 244, 323, 378
AlwI	GGATC	2 cut(s)	26, 65
AoxI	GGCC	4 cut(s)	25, 115, 127, 254
AspLEI	GCGC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	354
AsuII	TTCGAA	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	336
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	2 cut(s)	131, 355
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	55, 354
BmrFI	CCNGG	2 cut(s)	55, 354
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	1 cut(s)	158
BshFI	GGCC	4 cut(s)	27, 117, 129, 256
BsiSI	CCGG	2 cut(s)	277, 353
BsnI	GGCC	4 cut(s)	27, 117, 129, 256
Bsp119I	TTCGAA	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	18, 57, 221
BspACI	CCGC	3 cut(s)	24, 144, 183
BspANI	GGCC	4 cut(s)	27, 117, 129, 256
BspCNI	CTCAG	1 cut(s)	387
BspPI	GGATC	2 cut(s)	26, 65
BspT104I	TTCGAA	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	308
BssMI	GATC	3 cut(s)	18, 57, 221
Bst2UI	CCWGG	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	296
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	3 cut(s)	21, 60, 224
BstMBI	GATC	3 cut(s)	18, 57, 221
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	2 cut(s)	53, 352
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	4 cut(s)	27, 117, 129, 256
BtsCI	GGATG	1 cut(s)	153
CfoI	GCGC	1 cut(s)	203
CviJI	RGCY	9 cut(s)	5, 27, 38, 117, 129, 244, 256, 323, 378
CviKI_1	RGCY	9 cut(s)	5, 27, 38, 117, 129, 244, 256, 323, 378
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	3 cut(s)	20, 59, 223
DpnII	GATC	3 cut(s)	18, 57, 221
EciI	GGCGGA	1 cut(s)	133
Eco147I	AGGCCT	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	53
FaiI	YATR	2 cut(s)	35, 99
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	25
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	4 cut(s)	27, 117, 129, 256
HapII	CCGG	2 cut(s)	277, 353
HhaI	GCGC	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	4 cut(s)	174, 211, 344, 370
HpaII	CCGG	2 cut(s)	277, 353
Hpy188I	TCNGA	5 cut(s)	173, 216, 315, 328, 390
Hpy188III	TCNNGA	1 cut(s)	248
Hpy99I	CGWCG	3 cut(s)	200, 276, 386
HpyAV	CCTTC	2 cut(s)	171, 196
HpyF3I	CTNAG	1 cut(s)	374
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	18, 57, 221
LpnPI	CCDG	8 cut(s)	40, 67, 99, 120, 238, 290, 321, 366
LweI	GCATC	1 cut(s)	294
MalI	GATC	3 cut(s)	20, 59, 223
MboI	GATC	3 cut(s)	18, 57, 221
MboII	GAAGA	1 cut(s)	341
MflI	RGATCY	1 cut(s)	18
MluCI	AATT	3 cut(s)	231, 287, 357
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	6 cut(s)	121, 140, 167, 176, 179, 267
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	2 cut(s)	277, 353
MspR9I	CCNGG	2 cut(s)	55, 354
MvaI	CCWGG	1 cut(s)	55
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	3 cut(s)	18, 57, 221
NspV	TTCGAA	1 cut(s)	296
PceI	AGGCCT	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 345
PfeI	GAWTC	3 cut(s)	174, 344, 370
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	38
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	3 cut(s)	18, 57, 221
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	55, 354
SetI	ASST	5 cut(s)	40, 87, 246, 325, 380
SfaNI	GCATC	1 cut(s)	294
SfuI	TTCGAA	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	3 cut(s)	231, 287, 357
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	3 cut(s)	24, 144, 183
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	2 cut(s)	53, 352
TaqI	TCGA	1 cut(s)	296
TasI	AATT	3 cut(s)	231, 287, 357
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	3 cut(s)	174, 344, 370
TspGWI	ACGGA	3 cut(s)	243, 260, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.