Rh3AG230500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001121
Physical Location & Seq
Reverse (-)
23746133 .. 23756755
10623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG230500.1

Sequence Viewer

Length: 237 bp
ATGACTAAGCATCAACACATGCATGCAGCTGGCCAAATGAGAATACAAGGCATATATAGAAGGCATGGGCGCGGCGTACTGGACCACCAAGAGTGGCGTGGGTGTGGCCTCGATGGGAGTGATGCGGCAGGAGCTGGTCATGAAATCGATTGTTCCGGTGGTCATGGCTGGAGTGCTTGGGATCTACAGCCTCATCATAGCTGTGATTATCAGCATCGGGATCAATCCAAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.71

Weight (kDa)

6.78

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 72
AciI CCGC 2 cut(s) 72, 125
AclWI GGATC 2 cut(s) 189, 228
AcoI YGGCCR 1 cut(s) 31
AfaI GTAC 1 cut(s) 78
AluBI AGCT 3 cut(s) 29, 134, 201
AluI AGCT 3 cut(s) 29, 134, 201
AlwI GGATC 2 cut(s) 189, 228
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 2 cut(s) 31, 106
ApeKI GCWGC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 82
AvaII GGWCC 1 cut(s) 82
BalI TGGCCA 1 cut(s) 33
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 185
BisI GCNGC 3 cut(s) 27, 73, 126
BlsI GCNGC 3 cut(s) 28, 74, 127
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmsI GCATC 3 cut(s) 19, 112, 223
BpmI CTGGAG 1 cut(s) 190
Bsa29I ATCGAT 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 84
BseCI ATCGAT 1 cut(s) 147
BseNI ACTGG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 2 cut(s) 33, 108
BshVI ATCGAT 1 cut(s) 147
BsiSI CCGG 1 cut(s) 156
BsnI GGCC 2 cut(s) 33, 108
Bsp143I GATC 2 cut(s) 181, 220
BspACI CCGC 2 cut(s) 72, 125
BspANI GGCC 2 cut(s) 33, 108
BspDI ATCGAT 1 cut(s) 147
BspFNI CGCG 1 cut(s) 72
BspHI TCATGA 1 cut(s) 139
BspPI GGATC 2 cut(s) 189, 228
BsrI ACTGG 1 cut(s) 84
BssMI GATC 2 cut(s) 181, 220
BstC8I GCNNGC 2 cut(s) 24, 31
BstDEI CTNAG 1 cut(s) 6
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 2 cut(s) 184, 223
BstMBI GATC 2 cut(s) 181, 220
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 2 cut(s) 22, 26
BstSFI CTRYAG 1 cut(s) 185
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
Bsu15I ATCGAT 1 cut(s) 147
BsuRI GGCC 2 cut(s) 33, 108
BsuTUI ATCGAT 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 24, 31
CaiI CAGNNNCTG 1 cut(s) 134
CciI TCATGA 1 cut(s) 139
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 82
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 1 cut(s) 77
CviAII CATG 5 cut(s) 19, 23, 65, 140, 164
CviJI RGCY 8 cut(s) 29, 33, 108, 134, 168, 190, 201, 234
CviKI_1 RGCY 8 cut(s) 29, 33, 108, 134, 168, 190, 201, 234
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 183, 222
DpnII GATC 2 cut(s) 181, 220
EaeI YGGCCR 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 24
FaeI CATG 5 cut(s) 22, 26, 68, 143, 167
FaiI YATR 9 cut(s) 20, 24, 53, 55, 57, 66, 141, 165, 198
FatI CATG 5 cut(s) 18, 22, 64, 139, 163
Fnu4HI GCNGC 3 cut(s) 27, 73, 126
Fsp4HI GCNGC 3 cut(s) 27, 73, 126
GlaI GCGC 1 cut(s) 71
GluI GCNGC 3 cut(s) 27, 73, 126
GsuI CTGGAG 1 cut(s) 190
HaeIII GGCC 2 cut(s) 33, 108
HapII CCGG 1 cut(s) 156
HhaI GCGC 1 cut(s) 72
Hin1II CATG 5 cut(s) 22, 26, 68, 143, 167
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HpaII CCGG 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 140, 218
HpyAV CCTTC 1 cut(s) 54
HpyCH4V TGCA 2 cut(s) 22, 26
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 5 cut(s) 22, 26, 68, 143, 167
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 2 cut(s) 181, 220
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 6 cut(s) 15, 65, 114, 120, 154, 169
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 3 cut(s) 19, 112, 223
MalI GATC 2 cut(s) 183, 222
MboI GATC 2 cut(s) 181, 220
MflI RGATCY 1 cut(s) 181
MlsI TGGCCA 1 cut(s) 33
MluNI TGGCCA 1 cut(s) 33
MnlI CCTC 2 cut(s) 119, 201
Mox20I TGGCCA 1 cut(s) 33
Mph1103I ATGCAT 1 cut(s) 24
MscI TGGCCA 1 cut(s) 33
MslI CAYNNNNRTG 2 cut(s) 21, 201
Msp20I TGGCCA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 2 cut(s) 181, 220
NlaIII CATG 5 cut(s) 22, 26, 68, 143, 167
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 2 cut(s) 22, 26
PaeI GCATGC 1 cut(s) 26
PagI TCATGA 1 cut(s) 139
PkrI GCNGC 3 cut(s) 28, 74, 127
PspPI GGNCC 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
RseI CAYNNNNRTG 2 cut(s) 21, 201
SatI GCNGC 3 cut(s) 27, 73, 126
Sau3AI GATC 2 cut(s) 181, 220
Sau96I GGNCC 1 cut(s) 82
SetI ASST 3 cut(s) 31, 136, 203
SfaNI GCATC 3 cut(s) 19, 112, 223
SfcI CTRYAG 1 cut(s) 185
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 2 cut(s) 21, 201
SphI GCATGC 1 cut(s) 26
SsiI CCGC 2 cut(s) 72, 125
TaqI TCGA 2 cut(s) 111, 147
TauI GCSGC 2 cut(s) 75, 128
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 82
XceI RCATGY 2 cut(s) 22, 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.