Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Forward (+)

66559834 .. 66560653

Gene Structure 820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG410400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGCGCGGCGTACTGGACCGCCAAGAGTGGCGTGGGCGTGGCCTCGATGGGAGTGATGCGGCAGGAGCTGGTCATGAAATCGATTGTTCCGGTGGTCATGGCTGGAGTGCTTGGGATTTACGGCCTCATCATAACCGTGATTATCAGCATCGGGATCAATCCAAAGGCTAAATCTTATTACCTGTTTGATGGATATGCTCACTTGTCCTCTGTCCTTACTTGTGGCCTCGCTGGACGTTCCACCGTCGTCATCCCCCCTTCCCTCCTTCGATTCTCAACCTTCACCGTCGCCGGCGCTCTTGGGAGTTCGAAACATTCTTGCGGAATTGGTTCGGAACAGAGCTTCCGAAGAAGACGGCAGCGTTCCGTGCTAAGAATTACCAATGAAATTCTCGGCTTCGTCGCTCAGATTTTGAAGCTTTCGGACTATTGGACCCGCTTTCCTATACCACTGGACCACCATGAAGTCGGAATGGAAGCTGAGCAGAGGGAACCTATAGCAGAAGAACTGAAAGGAGGTGGCCGACATCGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

179

Amino Acids

19.42

Weight (kDa)

9.82

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	1 - 49	2.1e-09	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AciI	CCGC	5 cut(s)	8, 21, 61, 324, 439
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	1 cut(s)	390
AfaI	GTAC	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	418
AloI	GAACNNNNNNTCC	2 cut(s)	330, 362
AluBI	AGCT	4 cut(s)	70, 345, 421, 482
AluI	AGCT	4 cut(s)	70, 345, 421, 482
AlwI	GGATC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	70
AoxI	GGCC	4 cut(s)	42, 124, 226, 523
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	331
AspLEI	GCGC	2 cut(s)	8, 299
AspS9I	GGNCC	3 cut(s)	18, 435, 457
AsuHPI	GGTGA	1 cut(s)	277
AsuII	TTCGAA	1 cut(s)	311
AvaII	GGWCC	3 cut(s)	18, 435, 457
BbsI	GAAGAC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	43, 185
BceAI	ACGGC	2 cut(s)	139, 374
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	3 cut(s)	9, 62, 362
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	3 cut(s)	10, 63, 363
Bme18I	GGWCC	3 cut(s)	18, 435, 457
BmgT120I	GGNCC	3 cut(s)	18, 435, 457
BmiI	GGNNCC	2 cut(s)	437, 495
BmsI	GCATC	2 cut(s)	48, 159
BpiI	GAAGAC	1 cut(s)	361
BpmI	CTGGAG	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	20, 459
BseCI	ATCGAT	1 cut(s)	83
BseGI	GGATG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	422, 474
BseNI	ACTGG	2 cut(s)	20, 459
BseXI	GCAGC	1 cut(s)	373
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	4 cut(s)	44, 126, 228, 525
BshVI	ATCGAT	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	92, 294
BsnI	GGCC	4 cut(s)	44, 126, 228, 525
Bsp119I	TTCGAA	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	156
Bsp1720I	GCTNAGC	1 cut(s)	483
BspACI	CCGC	5 cut(s)	8, 21, 61, 324, 439
BspANI	GGCC	4 cut(s)	44, 126, 228, 525
BspCNI	CTCAG	2 cut(s)	421, 475
BspDI	ATCGAT	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	437, 495
BspPI	GGATC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	20, 459
BssAI	RCCGGY	1 cut(s)	293
BssMI	GATC	1 cut(s)	156
Bst4CI	ACNGT	3 cut(s)	139, 247, 289
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	374, 408, 483
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	8, 299
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 370
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	361
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	4 cut(s)	44, 126, 228, 525
BsuTUI	ATCGAT	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	452
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	70
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	2 cut(s)	8, 299
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	3 cut(s)	18, 435, 457
ClaI	ATCGAT	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	3 cut(s)	76, 100, 464
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	3 cut(s)	374, 408, 483
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	523
Eco47I	GGWCC	3 cut(s)	18, 435, 457
FaeI	CATG	3 cut(s)	79, 103, 467
FaiI	YATR	7 cut(s)	77, 101, 134, 198, 449, 465, 500
FatI	CATG	3 cut(s)	75, 99, 463
FauI	CCCGC	1 cut(s)	446
Fnu4HI	GCNGC	3 cut(s)	9, 62, 362
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	9, 62, 362
GlaI	GCGC	2 cut(s)	7, 298
GluI	GCNGC	3 cut(s)	9, 62, 362
GsuI	CTGGAG	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	4 cut(s)	44, 126, 228, 525
HapII	CCGG	2 cut(s)	92, 294
HhaI	GCGC	2 cut(s)	8, 299
Hin1II	CATG	3 cut(s)	79, 103, 467
Hin6I	GCGC	2 cut(s)	6, 297
HinP1I	GCGC	2 cut(s)	6, 297
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	2 cut(s)	92, 294
HphI	GGTGA	1 cut(s)	277
Hpy188I	TCNGA	5 cut(s)	337, 350, 411, 427, 473
Hpy188III	TCNNGA	2 cut(s)	76, 154
Hpy99I	CGWCG	3 cut(s)	251, 293, 407
HpyAV	CCTTC	3 cut(s)	270, 278, 292
HpyCH4III	ACNGT	3 cut(s)	139, 247, 289
HpyCH4IV	ACGT	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 370
HpyF3I	CTNAG	3 cut(s)	374, 408, 483
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	3 cut(s)	79, 103, 467
HspAI	GCGC	2 cut(s)	6, 297
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	8 cut(s)	50, 56, 90, 105, 197, 219, 307, 440
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	2 cut(s)	48, 159
MaeII	ACGT	1 cut(s)	238
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	3 cut(s)	363, 366, 518
MluCI	AATT	3 cut(s)	327, 378, 390
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	7 cut(s)	55, 137, 220, 239, 275, 483, 512
MreI	CGCCGGCG	1 cut(s)	293
MroNI	GCCGGC	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	331
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	2 cut(s)	92, 294
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	67, 370
NaeI	GCCGGC	1 cut(s)	295
NdeII	GATC	1 cut(s)	156
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	3 cut(s)	79, 103, 467
NlaIV	GGNNCC	2 cut(s)	437, 495
NmeAIII	GCCGAG	1 cut(s)	375
NspV	TTCGAA	1 cut(s)	311
PagI	TCATGA	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	10, 63, 363
PspN4I	GGNNCC	2 cut(s)	437, 495
PspPI	GGNCC	3 cut(s)	18, 435, 457
PstNI	CAGNNNCTG	1 cut(s)	70
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	137
SatI	GCNGC	3 cut(s)	9, 62, 362
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	3 cut(s)	18, 435, 457
SetI	ASST	9 cut(s)	72, 186, 241, 284, 347, 423, 484, 499, 523
SfaNI	GCATC	2 cut(s)	48, 159
SfcI	CTRYAG	1 cut(s)	498
SfuI	TTCGAA	1 cut(s)	311
SgrAI	CRCCGGYG	1 cut(s)	293
SinI	GGWCC	3 cut(s)	18, 435, 457
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	327, 378, 390
SsiI	CCGC	5 cut(s)	8, 21, 61, 324, 439
TaaI	ACNGT	3 cut(s)	139, 247, 289
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	4 cut(s)	47, 83, 271, 311
TasI	AATT	3 cut(s)	327, 378, 390
TauI	GCSGC	2 cut(s)	11, 64
TfiI	GAWTC	1 cut(s)	273
TscAI	CASTG	1 cut(s)	459
TseI	GCWGC	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	92, 402, 480
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	1 cut(s)	459
VpaK11BI	GGWCC	3 cut(s)	18, 435, 457
XapI	RAATTY	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.