Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Forward (+)

5132794 .. 5133189

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG073100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCTGGAGTGCTTGGGATCTGCGGCCTTATCATAGCTGTGATTATCAGCACCAGGATCAATCCAAAGGCAAAATCTTATTACCTATTTGATGGATATGCTCACTTGTCCTCTGGCCTTGCTTGTGGCCTCGCTGGACTTTCCGCCGTCATCATCCTCCCTTCCCTCCTCCGATTCTCCACCGCCTTCGCTGTCGTCGGCGCTCTTGGGAGTCCGAAACGATCTCACGGAATTGGGCGAGAGCTTCAAGACAGGCCTCTCGTTTCTCTCCGTCGCCGGAACACCAAATTGACTTCGAACTTGATGCCAGTTCGGAATAGAGCTTCGGAAGACGACAACGGCGATTCCGTGCCGGGAATTACCGATGAGATTCTCAGCTTCGTCGTTCAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0006884 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008199 GO:0008361 GO:0009056 GO:0009987 GO:0009992 GO:0016043 GO:0016052 GO:0016234 GO:0016491 GO:0016614 GO:0016616 GO:0016651 GO:0016701 GO:0019310 GO:0019637 GO:0019725 GO:0019751 GO:0019932 GO:0023052 GO:0030104 GO:0032535 GO:0035556 GO:0036094 GO:0042592 GO:0043167 GO:0043169 GO:0043647 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046174 GO:0046872 GO:0046914 GO:0048016 GO:0048037 GO:0048878 GO:0050113 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0055114 GO:0061024 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0097159 GO:1901265 GO:1901363 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00053 ko00190 ko00562 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00053 map00190 map00562 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C MIOX

Protein Analysis

131

Amino Acids

13.92

Weight (kDa)

9.69

Isoelectric Point (pI)

57.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	24, 144, 183
AclWI	GGATC	2 cut(s)	26, 65
AgsI	TTSAA	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	4 cut(s)	38, 244, 323, 378
AluI	AGCT	4 cut(s)	38, 244, 323, 378
AlwI	GGATC	2 cut(s)	26, 65
AoxI	GGCC	4 cut(s)	25, 115, 127, 254
AspLEI	GCGC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	354
AsuII	TTCGAA	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	336
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	2 cut(s)	131, 355
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	55, 354
BmrFI	CCNGG	2 cut(s)	55, 354
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	1 cut(s)	158
BshFI	GGCC	4 cut(s)	27, 117, 129, 256
BsiSI	CCGG	2 cut(s)	277, 353
BsnI	GGCC	4 cut(s)	27, 117, 129, 256
Bsp119I	TTCGAA	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	18, 57, 221
BspACI	CCGC	3 cut(s)	24, 144, 183
BspANI	GGCC	4 cut(s)	27, 117, 129, 256
BspCNI	CTCAG	1 cut(s)	387
BspPI	GGATC	2 cut(s)	26, 65
BspT104I	TTCGAA	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	308
BssMI	GATC	3 cut(s)	18, 57, 221
Bst2UI	CCWGG	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	296
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	3 cut(s)	21, 60, 224
BstMBI	GATC	3 cut(s)	18, 57, 221
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	2 cut(s)	53, 352
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	4 cut(s)	27, 117, 129, 256
BtsCI	GGATG	1 cut(s)	153
CfoI	GCGC	1 cut(s)	203
CviJI	RGCY	9 cut(s)	5, 27, 38, 117, 129, 244, 256, 323, 378
CviKI_1	RGCY	9 cut(s)	5, 27, 38, 117, 129, 244, 256, 323, 378
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	3 cut(s)	20, 59, 223
DpnII	GATC	3 cut(s)	18, 57, 221
EciI	GGCGGA	1 cut(s)	133
Eco147I	AGGCCT	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	53
FaiI	YATR	2 cut(s)	35, 99
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	25
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	4 cut(s)	27, 117, 129, 256
HapII	CCGG	2 cut(s)	277, 353
HhaI	GCGC	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	4 cut(s)	174, 211, 344, 370
HpaII	CCGG	2 cut(s)	277, 353
Hpy188I	TCNGA	5 cut(s)	173, 216, 315, 328, 390
Hpy188III	TCNNGA	1 cut(s)	248
Hpy99I	CGWCG	3 cut(s)	200, 276, 386
HpyAV	CCTTC	2 cut(s)	171, 196
HpyF3I	CTNAG	1 cut(s)	374
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	18, 57, 221
LpnPI	CCDG	8 cut(s)	40, 67, 99, 120, 238, 290, 321, 366
LweI	GCATC	1 cut(s)	294
MalI	GATC	3 cut(s)	20, 59, 223
MboI	GATC	3 cut(s)	18, 57, 221
MboII	GAAGA	1 cut(s)	341
MflI	RGATCY	1 cut(s)	18
MluCI	AATT	3 cut(s)	231, 287, 357
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	6 cut(s)	121, 140, 167, 176, 179, 267
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	2 cut(s)	277, 353
MspR9I	CCNGG	2 cut(s)	55, 354
MvaI	CCWGG	1 cut(s)	55
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	3 cut(s)	18, 57, 221
NspV	TTCGAA	1 cut(s)	296
PceI	AGGCCT	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 345
PfeI	GAWTC	3 cut(s)	174, 344, 370
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	38
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	3 cut(s)	18, 57, 221
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	55, 354
SetI	ASST	5 cut(s)	40, 87, 246, 325, 380
SfaNI	GCATC	1 cut(s)	294
SfuI	TTCGAA	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	3 cut(s)	231, 287, 357
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	3 cut(s)	24, 144, 183
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	2 cut(s)	53, 352
TaqI	TCGA	1 cut(s)	296
TasI	AATT	3 cut(s)	231, 287, 357
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	3 cut(s)	174, 344, 370
TspGWI	ACGGA	3 cut(s)	243, 260, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.