Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Forward (+)

13896413 .. 13898826

Gene Structure 2414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTTTACTTCTATCAAAATGTTGACTTTGATGAGGGCATGGGCGCGGCGTACTGGACCGCCAAAAGTGGCGTGGGCGTGGCCTCGATGGGAGTGACGCGGCAGGAGCTCGTCATGAAATCGATTGTTCCGGTGGTCATGGCTGGAGTGCTTGGGATCTACGGCCTCATCATAGCTGTGATTATCAGCATCGGGATCAATCCAAGGGCTAAATCTTATTACCTGTTTGATGGATATGCTCACTTGTCCTCTGTCCTTACTTGTGGCCTCGCTGGACATTCCACCGTCGTGATTCAATCTACTAATCCAATCGTTTTCATACGTTTTACTTTTGTCTTTATTTTTTTGTTGCCGTTTAGGCTTCTGTATATTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

125

Amino Acids

13.72

Weight (kDa)

8.62

Isoelectric Point (pI)

20.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	13 - 62	8e-11	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	47, 100
AciI	CCGC	3 cut(s)	47, 60, 100
AclWI	GGATC	2 cut(s)	164, 203
AfaI	GTAC	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	296
AleI	CACNNNNGTG	1 cut(s)	287
AluBI	AGCT	2 cut(s)	109, 176
AluI	AGCT	2 cut(s)	109, 176
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	164, 203
AoxI	GGCC	3 cut(s)	81, 163, 265
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	2 cut(s)	82, 224
BceAI	ACGGC	2 cut(s)	178, 337
BglI	GCCNNNNNGGC	1 cut(s)	358
BisI	GCNGC	2 cut(s)	48, 101
BlsI	GCNGC	2 cut(s)	49, 102
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmsI	GCATC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	165
Bsa29I	ATCGAT	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	59
Bsh1236I	CGCG	2 cut(s)	47, 100
BshFI	GGCC	3 cut(s)	83, 165, 267
BshVI	ATCGAT	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	131
BsnI	GGCC	3 cut(s)	83, 165, 267
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	156, 195
BspACI	CCGC	3 cut(s)	47, 60, 100
BspANI	GGCC	3 cut(s)	83, 165, 267
BspDI	ATCGAT	1 cut(s)	122
BspFNI	CGCG	2 cut(s)	47, 100
BspHI	TCATGA	1 cut(s)	114
BspPI	GGATC	2 cut(s)	164, 203
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	2 cut(s)	156, 195
BssT1I	CCWWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	286
BstFNI	CGCG	2 cut(s)	47, 100
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	159, 198
BstMBI	GATC	2 cut(s)	156, 195
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 358
BstUI	CGCG	2 cut(s)	47, 100
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	3 cut(s)	83, 165, 267
BsuTUI	ATCGAT	1 cut(s)	122
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	57
ClaI	ATCGAT	1 cut(s)	122
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	3 cut(s)	40, 115, 139
CviJI	RGCY	8 cut(s)	83, 109, 143, 165, 176, 209, 267, 361
CviKI_1	RGCY	8 cut(s)	83, 109, 143, 165, 176, 209, 267, 361
CviQI	GTAC	1 cut(s)	52
DpnI	GATC	2 cut(s)	158, 197
DpnII	GATC	2 cut(s)	156, 195
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	3 cut(s)	43, 118, 142
FaiI	YATR	7 cut(s)	41, 116, 140, 173, 237, 320, 369
FatI	CATG	3 cut(s)	39, 114, 138
Fnu4HI	GCNGC	2 cut(s)	48, 101
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	48, 101
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	2 cut(s)	48, 101
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	83, 165, 267
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	3 cut(s)	43, 118, 142
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	1 cut(s)	131
Hpy166II	GTNNAC	2 cut(s)	7, 25
Hpy188III	TCNNGA	3 cut(s)	115, 193, 289
Hpy8I	GTNNAC	2 cut(s)	7, 25
Hpy99I	CGWCG	1 cut(s)	290
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 358
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	3 cut(s)	43, 118, 142
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	156, 195
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	6 cut(s)	40, 89, 129, 144, 236, 258
LweI	GCATC	1 cut(s)	198
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	2 cut(s)	158, 197
MboI	GATC	2 cut(s)	156, 195
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	111
MnlI	CCTC	5 cut(s)	28, 94, 176, 259, 278
MslI	CAYNNNNRTG	2 cut(s)	176, 287
MspI	CCGG	1 cut(s)	131
MvnI	CGCG	2 cut(s)	47, 100
MwoI	GCNNNNNNNGC	2 cut(s)	106, 358
NdeII	GATC	2 cut(s)	156, 195
NlaIII	CATG	3 cut(s)	43, 118, 142
NmuCI	GTSAC	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	287
PagI	TCATGA	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	49, 102
Psp124BI	GAGCTC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	2 cut(s)	176, 287
SacI	GAGCTC	1 cut(s)	111
SatI	GCNGC	2 cut(s)	48, 101
Sau3AI	GATC	2 cut(s)	156, 195
Sau96I	GGNCC	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	4 cut(s)	111, 178, 225, 325
SfaNI	GCATC	1 cut(s)	198
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	2 cut(s)	176, 287
SsiI	CCGC	3 cut(s)	47, 60, 100
SstI	GAGCTC	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	2 cut(s)	86, 122
TauI	GCSGC	2 cut(s)	50, 103
TfiI	GAWTC	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	131, 307
VpaK11BI	GGWCC	1 cut(s)	57
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.