Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000847.1

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Forward (+)

48558 .. 50410

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000847.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgtcaactcgcagccaaatggccaagcgaggttctaatatgtttgcgcctatatctgacttcttaacaactgattgtaggccgaggaaggaaccctctcggccgttaggttctaatgcttctattgcaaggacttcaattaggcatgggcgcggcgtactggaccgccaagagtggcgtgggcgtggcctcgatgggagtgatgccgcaggagctggtcatgaaatcgattgttccggtggtcatggctggagtgcttgggatcacgacctcatcatagctgtgattatcagcatcgggatcaatccaaaggctaaatcttattacatgtttgatggatatgctcacttgtcctctgtccttacttgtggcctcgctggactttccaccgtcgtcatccccccttctctcctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

138

Amino Acids

14.8

Weight (kDa)

8.96

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	153, 166, 207
AclWI	GGATC	2 cut(s)	270, 308
AcoI	YGGCCR	2 cut(s)	21, 101
AfaI	GTAC	1 cut(s)	159
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	138
AluBI	AGCT	2 cut(s)	215, 281
AluI	AGCT	2 cut(s)	215, 281
AlwI	GGATC	2 cut(s)	270, 308
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	5 cut(s)	21, 80, 101, 187, 370
ApeKI	GCWGC	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	49, 153
AspS9I	GGNCC	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	2 cut(s)	188, 329
BceAI	ACGGC	1 cut(s)	88
BisI	GCNGC	3 cut(s)	13, 154, 207
BlsI	GCNGC	3 cut(s)	14, 155, 208
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	93
BmsI	GCATC	2 cut(s)	193, 303
BpmI	CTGGAG	1 cut(s)	271
Bsa29I	ATCGAT	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	165
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	401
BseX3I	CGGCCG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	24
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	5 cut(s)	23, 82, 103, 189, 372
BshVI	ATCGAT	1 cut(s)	228
BsiEI	CGRYCG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	237
BsnI	GGCC	5 cut(s)	23, 82, 103, 189, 372
Bsp143I	GATC	2 cut(s)	262, 300
BspACI	CCGC	3 cut(s)	153, 166, 207
BspANI	GGCC	5 cut(s)	23, 82, 103, 189, 372
BspDI	ATCGAT	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	2 cut(s)	270, 308
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	262, 300
Bst4CI	ACNGT	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	49, 153
BstKTI	GATC	2 cut(s)	265, 303
BstMBI	GATC	2 cut(s)	262, 300
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 212
BstNSI	RCATGY	1 cut(s)	331
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	24
BstZI	CGGCCG	1 cut(s)	101
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	5 cut(s)	23, 82, 103, 189, 372
BsuTUI	ATCGAT	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	215
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	2 cut(s)	49, 153
Cfr13I	GGNCC	1 cut(s)	163
ClaI	ATCGAT	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	4 cut(s)	146, 221, 245, 328
CviQI	GTAC	1 cut(s)	158
DpnI	GATC	2 cut(s)	264, 302
DpnII	GATC	2 cut(s)	262, 300
EaeI	YGGCCR	2 cut(s)	21, 101
EagI	CGGCCG	1 cut(s)	101
EclXI	CGGCCG	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	163
Eco52I	CGGCCG	1 cut(s)	101
FaeI	CATG	4 cut(s)	149, 224, 248, 331
FaiI	YATR	8 cut(s)	41, 53, 147, 222, 246, 278, 329, 342
FatI	CATG	4 cut(s)	145, 220, 244, 327
Fnu4HI	GCNGC	3 cut(s)	13, 154, 207
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	3 cut(s)	13, 154, 207
GlaI	GCGC	2 cut(s)	48, 152
GluI	GCNGC	3 cut(s)	13, 154, 207
GsuI	CTGGAG	1 cut(s)	271
HaeIII	GGCC	5 cut(s)	23, 82, 103, 189, 372
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	2 cut(s)	49, 153
Hin1II	CATG	4 cut(s)	149, 224, 248, 331
Hin6I	GCGC	2 cut(s)	47, 151
HinP1I	GCGC	2 cut(s)	47, 151
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	58, 416
Hpy188III	TCNNGA	3 cut(s)	221, 266, 298
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	2 cut(s)	82, 414
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 212
Hsp92II	CATG	4 cut(s)	149, 224, 248, 331
HspAI	GCGC	2 cut(s)	47, 151
Kzo9I	GATC	2 cut(s)	262, 300
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	6 cut(s)	146, 195, 201, 235, 250, 363
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	2 cut(s)	193, 303
MalI	GATC	2 cut(s)	264, 302
MboI	GATC	2 cut(s)	262, 300
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	1 cut(s)	138
MluNI	TGGCCA	1 cut(s)	23
MnlI	CCTC	7 cut(s)	23, 78, 106, 200, 281, 364, 383
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	281
Msp20I	TGGCCA	1 cut(s)	23
MspI	CCGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	125, 212
NdeII	GATC	2 cut(s)	262, 300
NlaIII	CATG	4 cut(s)	149, 224, 248, 331
NlaIV	GGNNCC	1 cut(s)	93
NmeAIII	GCCGAG	2 cut(s)	79, 108
NspI	RCATGY	1 cut(s)	331
PagI	TCATGA	1 cut(s)	220
PciI	ACATGT	1 cut(s)	327
PkrI	GCNGC	3 cut(s)	14, 155, 208
PscI	ACATGT	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	3 cut(s)	13, 154, 207
Sau3AI	GATC	2 cut(s)	262, 300
Sau96I	GGNCC	1 cut(s)	163
SetI	ASST	5 cut(s)	34, 112, 217, 273, 283
SfaNI	GCATC	2 cut(s)	193, 303
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	3 cut(s)	153, 166, 207
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	192, 228
TasI	AATT	1 cut(s)	138
TauI	GCSGC	2 cut(s)	156, 209
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TseI	GCWGC	1 cut(s)	12
TspDTI	ATGAA	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	163
XceI	RCATGY	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.