Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Forward (+)

20140910 .. 20141332

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG199500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGCGCGGCGTACTGGACCGCCAAGAGTGGCGTGGGCGTGGCCTCGATGGGAGTGATGCGGCCGGAGCTGGTCATGAAATCGATCGTTCCGGTGGTCATGGCTGGAGTGCTTGGGATCTACGACCTCATCATAGCTGTGATTATCAGCACAGGGATCAATCCAAAGGCTAAATCTTATTACCTGTTTGATGGATATGCTCACTTGTCCTCTGTCCTTACTTGTGGCCTCGTTGGACTTTCCACCGTCGTCATCCCCCTTCCCTCCTCCGATTCTCCACCTTCACCGTCACCGGCACTCTTGGGAGTTCGAAACGATCTCGCAGAATTGGGTGGGAGCTTCAAGACAGGCCTCTCGTTTATCTCCATCACCGAAATCTCCAAATTGGCTTCGAACTTGATGCCAGTTCGGAACGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022613 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042254 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C RBFA

Protein Analysis

140

Amino Acids

14.43

Weight (kDa)

8.79

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	1 - 49	1.6e-10	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AciI	CCGC	3 cut(s)	8, 21, 61
AclWI	GGATC	2 cut(s)	125, 164
AcoI	YGGCCR	1 cut(s)	62
AfaI	GTAC	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	343
AluBI	AGCT	4 cut(s)	70, 137, 339, 419
AluI	AGCT	4 cut(s)	70, 137, 339, 419
AlwI	GGATC	2 cut(s)	125, 164
AoxI	GGCC	4 cut(s)	42, 62, 226, 349
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	3 cut(s)	276, 282, 361
AsuII	TTCGAA	2 cut(s)	310, 392
AvaII	GGWCC	1 cut(s)	18
BccI	CCATC	3 cut(s)	43, 185, 374
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BisI	GCNGC	2 cut(s)	9, 62
BlsI	GCNGC	2 cut(s)	10, 63
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmsI	GCATC	2 cut(s)	48, 390
BpmI	CTGGAG	1 cut(s)	126
Bpu14I	TTCGAA	2 cut(s)	310, 392
Bsa29I	ATCGAT	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	20, 404
BseCI	ATCGAT	1 cut(s)	83
BseGI	GGATG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	20, 404
BseRI	GAGGAG	1 cut(s)	256
BseX3I	CGGCCG	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	2 cut(s)	65, 87
BshFI	GGCC	4 cut(s)	44, 64, 228, 351
BshVI	ATCGAT	1 cut(s)	83
BsiEI	CGRYCG	2 cut(s)	65, 87
BsiSI	CCGG	3 cut(s)	65, 92, 293
BsnI	GGCC	4 cut(s)	44, 64, 228, 351
Bsp119I	TTCGAA	2 cut(s)	310, 392
Bsp143I	GATC	4 cut(s)	84, 117, 156, 316
BspACI	CCGC	3 cut(s)	8, 21, 61
BspANI	GGCC	4 cut(s)	44, 64, 228, 351
BspDI	ATCGAT	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	75
BspPI	GGATC	2 cut(s)	125, 164
BspT104I	TTCGAA	2 cut(s)	310, 392
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	20, 404
BssAI	RCCGGY	1 cut(s)	292
BssMI	GATC	4 cut(s)	84, 117, 156, 316
Bst4CI	ACNGT	2 cut(s)	247, 288
BstBI	TTCGAA	2 cut(s)	310, 392
BstDEI	CTNAG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	4 cut(s)	87, 120, 159, 319
BstMBI	GATC	4 cut(s)	84, 117, 156, 316
BstMCI	CGRYCG	2 cut(s)	65, 87
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstUI	CGCG	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BstZI	CGGCCG	1 cut(s)	62
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	4 cut(s)	44, 64, 228, 351
BsuTUI	ATCGAT	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	252
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	1 cut(s)	8
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	76, 100
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	4 cut(s)	86, 119, 158, 318
DpnII	GATC	4 cut(s)	84, 117, 156, 316
EaeI	YGGCCR	1 cut(s)	62
EagI	CGGCCG	1 cut(s)	62
EclXI	CGGCCG	1 cut(s)	62
Eco147I	AGGCCT	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	18
Eco52I	CGGCCG	1 cut(s)	62
FaeI	CATG	2 cut(s)	79, 103
FaiI	YATR	4 cut(s)	77, 101, 134, 198
FatI	CATG	2 cut(s)	75, 99
Fnu4HI	GCNGC	2 cut(s)	9, 62
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	9, 62
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	2 cut(s)	9, 62
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	4 cut(s)	44, 64, 228, 351
HapII	CCGG	3 cut(s)	65, 92, 293
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	79, 103
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	3 cut(s)	65, 92, 293
HphI	GGTGA	3 cut(s)	276, 282, 361
Hpy188I	TCNGA	2 cut(s)	271, 411
Hpy188III	TCNNGA	2 cut(s)	76, 343
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	269, 291
HpyCH4III	ACNGT	2 cut(s)	247, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	79, 103
HspAI	GCGC	1 cut(s)	6
Kzo9I	GATC	4 cut(s)	84, 117, 156, 316
LmnI	GCTCC	3 cut(s)	67, 336, 416
LpnPI	CCDG	9 cut(s)	56, 78, 90, 105, 138, 197, 306, 333, 417
LweI	GCATC	2 cut(s)	48, 390
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	4 cut(s)	86, 119, 158, 318
MboI	GATC	4 cut(s)	84, 117, 156, 316
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	2 cut(s)	326, 383
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	7 cut(s)	55, 137, 220, 239, 274, 277, 362
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	3 cut(s)	65, 92, 293
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	4 cut(s)	84, 117, 156, 316
NlaIII	CATG	2 cut(s)	79, 103
NmuCI	GTSAC	1 cut(s)	288
NspV	TTCGAA	2 cut(s)	310, 392
PagI	TCATGA	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	10, 63
Ple19I	CGATCG	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	117
PvuI	CGATCG	1 cut(s)	87
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	137
SatI	GCNGC	2 cut(s)	9, 62
Sau3AI	GATC	4 cut(s)	84, 117, 156, 316
Sau96I	GGNCC	1 cut(s)	18
SetI	ASST	7 cut(s)	72, 129, 139, 186, 283, 341, 421
SfaNI	GCATC	2 cut(s)	48, 390
SfuI	TTCGAA	2 cut(s)	310, 392
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	326, 383
SseBI	AGGCCT	1 cut(s)	351
SsiI	CCGC	3 cut(s)	8, 21, 61
StuI	AGGCCT	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	247, 288
TaqI	TCGA	4 cut(s)	47, 83, 310, 392
TasI	AATT	2 cut(s)	326, 383
TauI	GCSGC	2 cut(s)	11, 64
TfiI	GAWTC	1 cut(s)	272
TseFI	GTSAC	1 cut(s)	288
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.