Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001121

Physical Location & Seq

Genomic Coordinates Reverse (-)

25180791 .. 25183731

Gene Structure 2941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G010770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTTAAATTTTCAAAAACCCATAATTTACCCTTCTTTGATTATAGCATGGGCGCGGCGTACTGGACCGCCAAGAGTGGCGTGGGCGTGGCCTCGATGGGAGTGATGCGGCAGGAGCTGGTCATGAAATCGATTGTTTCGGTGGTCATGGCTGGAGTGCTTGGGATCTACGGCCTCATCATAGCTGTGATTATCAGCATCGGGATCAATCCAAAGGCTAAATCTTATTACCTGTTTGATGGATATGCTCACTTGTCCTCTGTCCTTACTTGTGGCCTTGCTGGACTTTCCACCGTCTTAATATACACTCGCTCCATAGAGTTATATATTACACAAGCTTACGAATTAAATTGTCAACAACAAGATAAAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022613 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042254 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C RBFA

Protein Analysis

124

Amino Acids

13.53

Weight (kDa)

8.89

Isoelectric Point (pI)

25.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	17 - 65	3.6e-10	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910
fragaria_vesca	FvH4_1g12060 FvH4_2g39101
prunus_persica	Prupe.1G370100_v2.0.a1 Prupe.8G083200_v2.0.a1
pyrus_communis	pycom08g13990
rosa_chinensis	RchiOBHm_Chr0c44g0503601 RchiOBHm_Chr2g0099681 RchiOBHm_Chr2g0148411 RchiOBHm_Chr3g0479911 RchiOBHm_Chr4g0386081 RchiOBHm_Chr4g0414591 RchiOBHm_Chr4g0441791 RchiOBHm_Chr5g0032691 RchiOBHm_Chr5g0056041 RchiOBHm_Chr6g0273741
rosa_laevigata	RLG00000011186 RLG00000016905
rosa_multiflora	Rmu_sc0000429.1_g000094 Rmu_sc0000847.1_g000011 Rmu_sc0006458.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142840 Rroxscaffold_6G00413310 Rroxscaffold_7G00172030
rosa_rugosa	Rorug02G0081900 Rorug02G0082000 Rorug02G0158600.1
rosa_samantha	Rh2AG131600 Rh2AG199500 Rh2BG134900 Rh2BG478700 Rh2CG135800 Rh2DG136300 Rh2DG487500 Rh3AG070500 Rh3AG230500 Rh3BG073100 Rh3CG071600 Rh4AG387600 Rh4CG011300 Rh4CG011900 Rh4CG012300 Rh4CG012700 Rh5BG410400 Rh5CG435500 Rh6AG160100 Rh6BG164100 Rh6BG196400 Rh6CG143400 Rh6CG154100 Rh6CG195500 Rh6DG149900
rosa_wichuraiana	Rw0G023060 Rw1G006760 Rw2G010210 Rw4G010770 Rw5G003630 Rw5G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	56
AciI	CCGC	3 cut(s)	56, 69, 109
AclWI	GGATC	2 cut(s)	173, 212
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	15
AluBI	AGCT	3 cut(s)	118, 185, 338
AluI	AGCT	3 cut(s)	118, 185, 338
AlwI	GGATC	2 cut(s)	173, 212
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	3 cut(s)	90, 172, 274
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	66
BccI	CCATC	2 cut(s)	91, 233
BceAI	ACGGC	1 cut(s)	187
BisI	GCNGC	2 cut(s)	57, 110
BlsI	GCNGC	2 cut(s)	58, 111
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmsI	GCATC	2 cut(s)	96, 207
BpmI	CTGGAG	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bse1I	ACTGG	1 cut(s)	68
BseCI	ATCGAT	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	3 cut(s)	92, 174, 276
BshVI	ATCGAT	1 cut(s)	131
BsnI	GGCC	3 cut(s)	92, 174, 276
Bsp143I	GATC	2 cut(s)	165, 204
BspACI	CCGC	3 cut(s)	56, 69, 109
BspANI	GGCC	3 cut(s)	92, 174, 276
BspDI	ATCGAT	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	123
BspPI	GGATC	2 cut(s)	173, 212
BsrI	ACTGG	1 cut(s)	68
BssMI	GATC	2 cut(s)	165, 204
Bst4CI	ACNGT	1 cut(s)	295
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	168, 207
BstMBI	GATC	2 cut(s)	165, 204
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstUI	CGCG	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
Bsu15I	ATCGAT	1 cut(s)	131
BsuRI	GGCC	3 cut(s)	92, 174, 276
BsuTUI	ATCGAT	1 cut(s)	131
CaiI	CAGNNNCTG	1 cut(s)	118
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	66
ClaI	ATCGAT	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	49, 124, 148
CviJI	RGCY	8 cut(s)	92, 118, 152, 174, 185, 218, 276, 338
CviKI_1	RGCY	8 cut(s)	92, 118, 152, 174, 185, 218, 276, 338
CviQI	GTAC	1 cut(s)	61
DpnI	GATC	2 cut(s)	167, 206
DpnII	GATC	2 cut(s)	165, 204
Eco47I	GGWCC	1 cut(s)	66
FaeI	CATG	3 cut(s)	52, 127, 151
FatI	CATG	3 cut(s)	48, 123, 147
Fnu4HI	GCNGC	2 cut(s)	57, 110
Fsp4HI	GCNGC	2 cut(s)	57, 110
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	57, 110
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	3 cut(s)	92, 174, 276
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	52, 127, 151
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	356
HindII	GTYRAC	1 cut(s)	356
HindIII	AAGCTT	1 cut(s)	336
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188III	TCNNGA	2 cut(s)	124, 202
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	3 cut(s)	52, 127, 151
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	165, 204
LmnI	GCTCC	2 cut(s)	115, 317
LpnPI	CCDG	6 cut(s)	49, 98, 104, 138, 245, 267
LweI	GCATC	2 cut(s)	96, 207
MaeII	ACGT	1 cut(s)	371
MalI	GATC	2 cut(s)	167, 206
MboI	GATC	2 cut(s)	165, 204
MflI	RGATCY	1 cut(s)	165
MluCI	AATT	4 cut(s)	8, 25, 344, 349
MnlI	CCTC	3 cut(s)	103, 185, 268
MseI	TTAA	3 cut(s)	6, 299, 347
MslI	CAYNNNNRTG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeII	GATC	2 cut(s)	165, 204
NlaIII	CATG	3 cut(s)	52, 127, 151
PagI	TCATGA	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	58, 111
PspPI	GGNCC	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	6, 299, 347
SatI	GCNGC	2 cut(s)	57, 110
Sau3AI	GATC	2 cut(s)	165, 204
Sau96I	GGNCC	1 cut(s)	66
SetI	ASST	5 cut(s)	120, 187, 234, 340, 374
SfaNI	GCATC	2 cut(s)	96, 207
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	4 cut(s)	8, 25, 344, 349
SsiI	CCGC	3 cut(s)	56, 69, 109
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	95, 131
TasI	AATT	4 cut(s)	8, 25, 344, 349
TauI	GCSGC	2 cut(s)	59, 112
Tru1I	TTAA	3 cut(s)	6, 299, 347
Tru9I	TTAA	3 cut(s)	6, 299, 347
TspDTI	ATGAA	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.