Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002202

Physical Location & Seq

Genomic Coordinates Forward (+)

19999192 .. 20002093

Gene Structure 2902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2598 bp

ATGGCACCTCCTAATGATCCTGTTAATCCGATCCCATTCGCGTGTCGGTCTGACAGTTTAGAACAATACTTTGATTTGTCTAATGGAAGGTTTAGTGTCAAAGGAGTTCCGTTGCTCGCTGAAGTTCCAAGCAATGTCACTTTTAACCACTTCCACTCAATCTTCAAGTCTTCTGATGCTCCACTTCCTGTGTTCGAACGCGTTCGCGCCTTGTCCCGCAAGGGCGGGTTCCTTGGATTCAGGAAGGAGGAGTCTTCGGATAGGTTGATGAACTCCTTAGGTAAATTTAGCAACAGGGATTTCCTTAGCATCTTTAGGTTCAAGACATGGTGGTCCACCATGTTTGTGGGAAGTTCAGGGTCAAATTTGCAAATGGAAACCCAATGGGTCCTCTTTGATGTCCCGGAAATTAAGTCCTATGTTATAATCTTACCTGTTATCGAAGGCAACTTTAGGTCCGCTCTTCACCCTGGCACTGATGATCATGTCATGATCTGTGCTGAGAGTGGTTCTACCCAAGTGAAAGCATCAAATTTCGATGCCATCGCTTATGTCCATGTTTCGGACAATCCCTACAACTTGATGAAAGAAGCATATAGTGCTCTTAGGGTCCATCTTAATACCTTTCGGCTGTTGGAAGAGAAGACGGTCCCCAATCTGGTTGACAAGTTTGGTTGGTGCACTTGGGATGCCTTCTACTTAACCGTAGAGCCTGTTGGTGTCTGGCATGGTGTGAACGAATTTGTCGAAGGAGGTGTATCCCCTAGGTTTCTCATCATCGATGATGGCTGGCAAAGCATCAATTTGGATGATGAGGATTTGAATGAGGATGCAAAAAATCTAGTTCTTGGCGGGACTCAAATGACTGCCAGGCTTTACAGGTTTGAGGAGTGCAAGAAGTTCAGGGAGTACAGAGGCGGTTCGATGTTGGCGCCGGATGCTCCTTCGTTTGATCCCAAAAAGCCAAAGTTGTTGATAGCCAAGGCAATTGAAATAGAACACGCTGAGAAGAATCGTGACAAGGCCATTCGATCTGGAGCCACTGACTCGTCGCAGTTTGAAACAAAAATTCAGAAGCTGAAACAAGAGTTGAATGAGATCCTTGGCAAAGAAGAAAGCGCTGCTTCTAATGAAAGCTGCGGAAGCTGTTCTTGCAGCGCCGAAAACTACGGAATGAAGGCTTTCACGAAGGATTTGAGAACCAAATTTAAAGGCTTAGACGATATATATGTATGGCATGCTCTTTGTGGTGCCTGGGGTGGTGTTAGACCAGGTTCAACACATCTTAAATCAAAGATCACTCCATGCAAAGTCTCTCCGGGACTTGATGGTACCATGACTGACCTTGCTGTGGTGAAAATCGTTGAGGGCGGAATTGGACTTGTTCATCCTGATCAAGCTGATAATTTGTATGACTCGATGCACTCCTACCTTTCCAAAGTTGGCATCACAGGAGTTAAAGTGGATGTTATTCATACTCTCGAGTACGTATCTGAGGAATATGGAGGCCGCGTGGAGCTCGCAAAGGCGTATTACAAGGGGTTGACTCGCTCTCTTCAGAGCAACTTCAAAGGGAATGGACTAATTGCTAGCATGCAGCAGTGCAATGATTTCTTCTTCCTTGGGACAAAGCAAATCTCTTTTGGAAGAGTTGGTGATGATTTTTGGTTCCAGGATCCGAACGGAGATCCGATGGGAGTTTATTGGTTACAAGGTGTTCATATGATCCATTGCGCCTACAACAGCATGTGGATGGGTCAGATCATACATCCCGATTGGGATATGTTCCAATCAGACCATCTGTGTGCCAAATTTCATGCAGGATCTAGAGCTATCTGTGGAGGTCCGGTGTATGTAAGTGACTCAGTTTCTGGCCATGATTTTGATCTCATTAAGAAGCTTGTTTACCCGGATGGTACCATTCCCAAGTGCCAGCATTTTGCCCTCCCCACTAGGGACTGCCTCTTCAAAAACCCTTTATTTGACAACAAAACTGTTCTTAAAATTTGGAACTTCAACAAGTATGGTGGTGTGATTGGAGCTTTCAACTGCCAAGGGGCTGGTTGGGACCCCAAAGAGCAAAGGATCAGAGGATACTCAGAGTGCTATAACCCGAAATCTTGTTCACTGCATGTTTCCGAAATTGAATGGGACCAAAAGATAGAAGCAGCACATATGGGCAAGGCTGAAGAGTACGTAGTCTATCTCAACCAGGCTGATGAACTCCGCCTAATGACCCCGAAATCTGATGCAATTCAAGTTATTATCCAGCCATCTTCGTTCGAGCTTTTCAGCTTCGTGCCAATTAAAAAGCTCGGACACAACATCAAATTCGCACCAATTGGACTTACAAACATGTTCAACAGTGGAGGTGCCCTCCAAGAGTTGGAGTACAAGAGTAGTGCGGCTGAGGTTAGTGCCATGGTGAAGGTCAAAGGTGGAGGCAATTTCTTGGCCTACTCAAGTGAGTCTCCAAAGAAATGTTATTTGAATGGTGCTGGAGTGGCTTTCGAGTGGTCGGCCGAGGGTAAACTGGCTCTGAACCTTGCGTGGGTTGAAGAAGCTGCTGGCATTTCCGATGTGGTTTTTGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006950 GO:0006979 GO:0008150 GO:0008378 GO:0009628 GO:0016740 GO:0016757 GO:0016758 GO:0047268 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

866

Amino Acids

96.41

Weight (kDa)

5.95

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raffinose_syn	PF05691	25 - 848	0.0	Raffinose synthase or seed imbibition protein Sip1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01970 AT4G01970
fragaria_vesca	FvH4_1g27000 FvH4_7g13680
malus_domestica	MD09G1285100.v1.1 MD15G1191100.v1.1
prunus_persica	Prupe.3G008900_v2.0.a1 Prupe.7G226100_v2.0.a1
pyrus_communis	pycom09g19250
rosa_chinensis	RchiOBHm_Chr1g0353751 RchiOBHm_Chr2g0091201 RchiOBHm_Chr3g0487291 RchiOBHm_Chr3g0487311
rosa_laevigata	RLG00000016191 RLG00000023016 RLG00000023018 RLG00000028260
rosa_multiflora	Rmu_co8130058.1_g000001 Rmu_sc0002270.1_g000014 Rmu_sc0021704.1_g000002 Rmu_sc0033684.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150390 Rroxscaffold_4G00301680 Rroxscaffold_6G00394920 Rroxscaffold_6G00394970
rosa_rugosa	Rorug01G0237700 Rorug02G0014400 Rorug03G0232800
rosa_samantha	Rh1AG249700 Rh1BG219900 Rh1CG232300 Rh1DG246900 Rh2BG058900 Rh2CG060700 Rh3AG280600 Rh3AG280800 Rh3BG316500 Rh3CG314700 Rh3DG312500
rosa_wichuraiana	Rw1G021790 Rw2G004970 Rw3G024860 Rw3G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AasI	GACNNNNNNGTC	1 cut(s)	331
Acc65I	GGTACC	2 cut(s)	1331, 1916
AccB1I	GGYRCC	6 cut(s)	4, 931, 1250, 1331, 1916, 2372
AccB7I	CCANNNNNTGG	1 cut(s)	2386
AccBSI	CCGCTC	1 cut(s)	461
AccII	CGCG	4 cut(s)	41, 201, 207, 1512
AcoI	YGGCCR	2 cut(s)	1873, 2520
AcsI	RAATTY	9 cut(s)	284, 364, 532, 740, 1068, 1205, 1811, 2004, 2330
AcuI	CTGAAG	3 cut(s)	141, 1541, 2208
AcyI	GRCGYC	1 cut(s)	932
AfaI	GTAC	6 cut(s)	911, 1333, 1487, 1918, 2195, 2393
AfeI	AGCGCT	1 cut(s)	1120
AfiI	CCNNNNNNNGG	6 cut(s)	562, 658, 1351, 1954, 2386, 2551
AflIII	ACRYGT	2 cut(s)	199, 2355
AjnI	CCWGG	6 cut(s)	469, 869, 1253, 1270, 1671, 2211
Alw21I	GWGCWC	3 cut(s)	604, 683, 1521
Alw26I	GTCTC	2 cut(s)	1318, 2475
Alw44I	GTGCAC	1 cut(s)	679
AlwNI	CAGNNNCTG	2 cut(s)	1078, 1871
Ama87I	CYCGRG	1 cut(s)	1481
Aor51HI	AGCGCT	1 cut(s)	1120
AoxI	GGCC	5 cut(s)	1023, 1507, 1873, 2454, 2520
ApaLI	GTGCAC	1 cut(s)	679
ApeKI	GCWGC	6 cut(s)	1121, 1137, 1155, 1597, 2168, 2564
ApoI	RAATTY	9 cut(s)	284, 364, 532, 740, 1068, 1205, 1811, 2004, 2330
Asp700I	GAANNNNTTC	3 cut(s)	201, 1147, 1181
Asp718I	GGTACC	2 cut(s)	1331, 1916
AspA2I	CCTAGG	1 cut(s)	764
AspLEI	GCGC	5 cut(s)	209, 934, 1121, 1160, 1736
AspS9I	GGNCC	8 cut(s)	333, 388, 456, 610, 649, 1844, 2068, 2152
AsuC2I	CCSGG	3 cut(s)	404, 1320, 1910
AsuHPI	GGTGA	4 cut(s)	458, 1366, 1667, 2437
AsuII	TTCGAA	1 cut(s)	195
AsuNHI	GCTAGC	1 cut(s)	1589
AvaI	CYCGRG	1 cut(s)	1481
AvaII	GGWCC	8 cut(s)	333, 388, 456, 610, 649, 1844, 2068, 2152
AvrII	CCTAGG	1 cut(s)	764
AxyI	CCTNAGG	1 cut(s)	277
BaeGI	GKGCMC	2 cut(s)	683, 2377
BalI	TGGCCA	1 cut(s)	1875
BamHI	GGATCC	1 cut(s)	1675
BanI	GGYRCC	6 cut(s)	4, 931, 1250, 1331, 1916, 2372
BanII	GRGCYC	1 cut(s)	1521
BarI	GAAGNNNNNNTAC	2 cut(s)	1889, 1921
BbsI	GAAGAC	3 cut(s)	162, 246, 650
Bbv12I	GWGCWC	3 cut(s)	604, 683, 1521
BbvCI	CCTCAGC	1 cut(s)	2409
BbvI	GCAGC	6 cut(s)	1108, 1124, 1167, 1609, 2180, 2551
BccI	CCATC	9 cut(s)	551, 621, 779, 1322, 1687, 1747, 1806, 1907, 2281
BciT130I	CCWGG	6 cut(s)	471, 871, 1255, 1272, 1673, 2213
BciVI	GTATCC	2 cut(s)	769, 2087
BclI	TGATCA	2 cut(s)	481, 1393
BcnI	CCSGG	3 cut(s)	404, 1320, 1910
BcoDI	GTCTC	2 cut(s)	1318, 2475
BfaI	CTAG	5 cut(s)	765, 842, 1590, 1827, 1953
BfoI	RGCGCY	3 cut(s)	935, 1122, 1161
BfuI	GTATCC	2 cut(s)	769, 2087
BisI	GCNGC	8 cut(s)	1122, 1138, 1156, 1510, 1598, 2169, 2406, 2565
BlnI	CCTAGG	1 cut(s)	764
BlsI	GCNGC	8 cut(s)	1123, 1139, 1157, 1511, 1599, 2170, 2407, 2566
Bme1390I	CCNGG	9 cut(s)	404, 471, 871, 1255, 1272, 1320, 1673, 1910, 2213
Bme18I	GGWCC	8 cut(s)	333, 388, 456, 610, 649, 1844, 2068, 2152
BmeT110I	CYCGRG	1 cut(s)	1481
BmgT120I	GGNCC	8 cut(s)	333, 388, 456, 610, 649, 1844, 2068, 2152
BmrFI	CCNGG	9 cut(s)	404, 471, 871, 1255, 1272, 1320, 1673, 1910, 2213
BmtI	GCTAGC	1 cut(s)	1593
BpiI	GAAGAC	3 cut(s)	162, 246, 650
BplI	GAGNNNNNCTC	2 cut(s)	2361, 2393
BpmI	CTGGAG	2 cut(s)	1056, 2520
Bpu10I	CCTNAGC	2 cut(s)	305, 2409
Bpu14I	TTCGAA	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	2446
BpuMI	CCSGG	3 cut(s)	404, 1320, 1910
Bsa29I	ATCGAT	1 cut(s)	780
BsaAI	YACGTR	2 cut(s)	1489, 2197
BsaBI	GATNNNNATC	1 cut(s)	1884
BsaHI	GRCGYC	1 cut(s)	932
BsaWI	WCCGGW	1 cut(s)	1846
BsaXI	ACNNNNNCTCC	6 cut(s)	1446, 1476, 1497, 1527, 1833, 1863
Bsc4I	CCNNNNNNNGG	6 cut(s)	562, 658, 1351, 1954, 2386, 2551
Bse1I	ACTGG	1 cut(s)	2538
Bse21I	CCTNAGG	1 cut(s)	277
Bse3DI	GCAATG	3 cut(s)	139, 1612, 1729
Bse8I	GATNNNNATC	1 cut(s)	1884
BseBI	CCWGG	6 cut(s)	471, 871, 1255, 1272, 1673, 2213
BseCI	ATCGAT	1 cut(s)	780
BseGI	GGATG	9 cut(s)	694, 814, 835, 943, 1387, 1471, 1758, 1768, 1918
BseJI	GATNNNNATC	1 cut(s)	1884
BseLI	CCNNNNNNNGG	6 cut(s)	562, 658, 1351, 1954, 2386, 2551
BseMI	GCAATG	3 cut(s)	139, 1612, 1729
BseMII	CTCAG	6 cut(s)	492, 996, 1485, 1878, 2112, 2400
BseNI	ACTGG	1 cut(s)	2538
BseRI	GAGGAG	2 cut(s)	263, 902
BseSI	GKGCMC	2 cut(s)	683, 2377
BseX3I	CGGCCG	1 cut(s)	2520
BseXI	GCAGC	6 cut(s)	1108, 1124, 1167, 1609, 2180, 2551
Bsh1236I	CGCG	4 cut(s)	41, 201, 207, 1512
Bsh1285I	CGRYCG	1 cut(s)	2523
BshFI	GGCC	5 cut(s)	1025, 1509, 1875, 2456, 2522
BshNI	GGYRCC	6 cut(s)	4, 931, 1250, 1331, 1916, 2372
BshVI	ATCGAT	1 cut(s)	780
BsiEI	CGRYCG	1 cut(s)	2523
BsiHKAI	GWGCWC	3 cut(s)	604, 683, 1521
BsiHKCI	CYCGRG	1 cut(s)	1481
BsiSI	CCGG	5 cut(s)	404, 935, 1319, 1847, 1910
BslFI	GGGAC	9 cut(s)	199, 386, 635, 868, 1335, 1639, 1970, 2081, 2165
BslI	CCNNNNNNNGG	6 cut(s)	562, 658, 1351, 1954, 2386, 2551
BsmAI	GTCTC	2 cut(s)	1318, 2475
BsmFI	GGGAC	9 cut(s)	199, 386, 635, 868, 1335, 1639, 1970, 2081, 2165
BsnI	GGCC	5 cut(s)	1025, 1509, 1875, 2456, 2522
BsoBI	CYCGRG	1 cut(s)	1481
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	4 cut(s)	604, 683, 1521, 2377
Bsp19I	CCATGG	1 cut(s)	2421
BspANI	GGCC	5 cut(s)	1025, 1509, 1875, 2456, 2522
BspCNI	CTCAG	6 cut(s)	493, 997, 1486, 1877, 2111, 2401
BspDI	ATCGAT	1 cut(s)	780
BspFNI	CGCG	4 cut(s)	41, 201, 207, 1512
BspHI	TCATGA	1 cut(s)	489
BspOI	GCTAGC	1 cut(s)	1593
BspQI	GCTCTTC	1 cut(s)	468
BspT104I	TTCGAA	1 cut(s)	195
BspT107I	GGYRCC	6 cut(s)	4, 931, 1250, 1331, 1916, 2372
BsrBI	CCGCTC	1 cut(s)	461
BsrDI	GCAATG	3 cut(s)	139, 1612, 1729
BsrI	ACTGG	1 cut(s)	2538
BssNI	GRCGYC	1 cut(s)	932
BssT1I	CCWWGG	7 cut(s)	232, 764, 981, 1102, 1621, 2053, 2421
Bst2UI	CCWGG	6 cut(s)	471, 871, 1255, 1272, 1673, 2213
Bst4CI	ACNGT	5 cut(s)	56, 649, 706, 1996, 2366
Bst6I	CTCTTC	6 cut(s)	468, 633, 1560, 1642, 1970, 2184
BstACI	GRCGYC	1 cut(s)	932
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstBAI	YACGTR	2 cut(s)	1489, 2197
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	8 cut(s)	117, 791, 1239, 1521, 1591, 1595, 1934, 2569
BstDSI	CCRYGG	1 cut(s)	2421
BstF5I	GGATG	9 cut(s)	694, 814, 835, 943, 1387, 1471, 1758, 1768, 1918
BstFNI	CGCG	4 cut(s)	41, 201, 207, 1512
BstH2I	RGCGCY	3 cut(s)	935, 1122, 1161
BstHHI	GCGC	5 cut(s)	209, 934, 1121, 1160, 1736
BstMAI	GTCTC	2 cut(s)	1318, 2475
BstMCI	CGRYCG	1 cut(s)	2523
BstMWI	GCNNNNNNNGC	6 cut(s)	599, 795, 938, 1143, 1152, 2504
BstNI	CCWGG	6 cut(s)	471, 871, 1255, 1272, 1673, 2213
BstNSI	RCATGY	5 cut(s)	1241, 1597, 1750, 2135, 2359
BstSCI	CCNGG	9 cut(s)	402, 469, 869, 1253, 1270, 1318, 1671, 1908, 2211
BstSLI	GKGCMC	2 cut(s)	683, 2377
BstSNI	TACGTA	2 cut(s)	1489, 2197
BstUI	CGCG	4 cut(s)	41, 201, 207, 1512
BstV1I	GCAGC	6 cut(s)	1108, 1124, 1167, 1609, 2180, 2551
BstV2I	GAAGAC	3 cut(s)	162, 246, 650
BstX2I	RGATCY	4 cut(s)	1098, 1675, 1687, 1823
BstXI	CCANNNNNNTGG	2 cut(s)	346, 2060
BstYI	RGATCY	4 cut(s)	1098, 1675, 1687, 1823
BstZI	CGGCCG	1 cut(s)	2520
Bsu15I	ATCGAT	1 cut(s)	780
Bsu36I	CCTNAGG	1 cut(s)	277
BsuI	GTATCC	2 cut(s)	769, 2087
BsuRI	GGCC	5 cut(s)	1025, 1509, 1875, 2456, 2522
BsuTUI	ATCGAT	1 cut(s)	780
BtgI	CCRYGG	1 cut(s)	2421
BtgZI	GCGATG	1 cut(s)	529
BtsCI	GGATG	9 cut(s)	694, 814, 835, 943, 1387, 1471, 1758, 1768, 1918
BtsI	GCAGTG	2 cut(s)	1607, 2126
BtsIMutI	CAGTG	5 cut(s)	474, 1041, 1607, 2126, 2371
Cac8I	GCNNGC	8 cut(s)	117, 791, 1239, 1521, 1591, 1595, 1934, 2569
CaiI	CAGNNNCTG	2 cut(s)	1078, 1871
CciI	TCATGA	1 cut(s)	489
CfoI	GCGC	5 cut(s)	209, 934, 1121, 1160, 1736
Cfr13I	GGNCC	8 cut(s)	333, 388, 456, 610, 649, 1844, 2068, 2152
ClaI	ATCGAT	1 cut(s)	780
CsiI	ACCWGGT	1 cut(s)	1270
Csp6I	GTAC	6 cut(s)	910, 1332, 1486, 1917, 2194, 2392
CspCI	CAANNNNNGTGG	4 cut(s)	325, 360, 2008, 2043
CviQI	GTAC	6 cut(s)	910, 1332, 1486, 1917, 2194, 2392
DinI	GGCGCC	1 cut(s)	933
DraI	TTTAAA	1 cut(s)	1210
DrdI	GACNNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	331
EaeI	YGGCCR	2 cut(s)	1873, 2520
EagI	CGGCCG	1 cut(s)	2520
Eam1104I	CTCTTC	6 cut(s)	468, 633, 1560, 1642, 1970, 2184
EarI	CTCTTC	6 cut(s)	468, 633, 1560, 1642, 1970, 2184
EciI	GGCGGA	2 cut(s)	1386, 2216
Ecl136II	GAGCTC	1 cut(s)	1519
EclXI	CGGCCG	1 cut(s)	2520
Eco105I	TACGTA	2 cut(s)	1489, 2197
Eco130I	CCWWGG	7 cut(s)	232, 764, 981, 1102, 1621, 2053, 2421
Eco24I	GRGCYC	1 cut(s)	1521
Eco47I	GGWCC	8 cut(s)	333, 388, 456, 610, 649, 1844, 2068, 2152
Eco47III	AGCGCT	1 cut(s)	1120
Eco52I	CGGCCG	1 cut(s)	2520
Eco53kI	GAGCTC	1 cut(s)	1519
Eco57I	CTGAAG	3 cut(s)	141, 1541, 2208
Eco81I	CCTNAGG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	1481
EcoICRI	GAGCTC	1 cut(s)	1519
EcoO109I	RGGNCCY	2 cut(s)	388, 2068
EcoRII	CCWGG	6 cut(s)	469, 869, 1253, 1270, 1671, 2211
EcoT14I	CCWWGG	7 cut(s)	232, 764, 981, 1102, 1621, 2053, 2421
EcoT38I	GRGCYC	1 cut(s)	1521
EgeI	GGCGCC	1 cut(s)	933
EheI	GGCGCC	1 cut(s)	933
ErhI	CCWWGG	7 cut(s)	232, 764, 981, 1102, 1621, 2053, 2421
FalI	AAGNNNNNCTT	4 cut(s)	1108, 1140, 1135, 1167
FaqI	GGGAC	9 cut(s)	199, 386, 635, 868, 1335, 1639, 1970, 2081, 2165
FauI	CCCGC	3 cut(s)	218, 224, 845
FauNDI	CATATG	2 cut(s)	1722, 2175
FbaI	TGATCA	2 cut(s)	481, 1393
Fnu4HI	GCNGC	8 cut(s)	1122, 1138, 1156, 1510, 1598, 2169, 2406, 2565
FokI	GGATG	9 cut(s)	701, 821, 842, 950, 1374, 1478, 1755, 1765, 1925
FriOI	GRGCYC	1 cut(s)	1521
Fsp4HI	GCNGC	8 cut(s)	1122, 1138, 1156, 1510, 1598, 2169, 2406, 2565
FspBI	CTAG	5 cut(s)	765, 842, 1590, 1827, 1953
GlaI	GCGC	5 cut(s)	208, 933, 1120, 1159, 1735
GluI	GCNGC	8 cut(s)	1122, 1138, 1156, 1510, 1598, 2169, 2406, 2565
GsuI	CTGGAG	2 cut(s)	1056, 2520
HaeII	RGCGCY	3 cut(s)	935, 1122, 1161
HaeIII	GGCC	5 cut(s)	1025, 1509, 1875, 2456, 2522
HapII	CCGG	5 cut(s)	404, 935, 1319, 1847, 1910
HhaI	GCGC	5 cut(s)	209, 934, 1121, 1160, 1736
Hin1I	GRCGYC	1 cut(s)	932
Hin6I	GCGC	5 cut(s)	207, 932, 1119, 1158, 1734
HinP1I	GCGC	5 cut(s)	207, 932, 1119, 1158, 1734
HincII	GTYRAC	2 cut(s)	664, 1545
HindII	GTYRAC	2 cut(s)	664, 1545
HindIII	AAGCTT	1 cut(s)	1898
HinfI	GANTC	9 cut(s)	237, 251, 856, 1012, 1046, 1415, 1546, 1862, 2468
HpaII	CCGG	5 cut(s)	404, 935, 1319, 1847, 1910
HphI	GGTGA	4 cut(s)	458, 1366, 1667, 2437
Hpy166II	GTNNAC	8 cut(s)	336, 664, 681, 736, 1545, 1906, 2126, 2531
Hpy8I	GTNNAC	8 cut(s)	336, 664, 681, 736, 1545, 1906, 2126, 2531
Hpy99I	CGWCG	1 cut(s)	1054
HpyAV	CCTTC	9 cut(s)	81, 238, 437, 703, 743, 954, 1171, 1183, 2422
HpyCH4III	ACNGT	5 cut(s)	56, 649, 706, 1996, 2366
HpyCH4IV	ACGT	2 cut(s)	1488, 2196
HpyF10VI	GCNNNNNNNGC	6 cut(s)	599, 795, 938, 1143, 1152, 2504
HpySE526I	ACGT	2 cut(s)	1488, 2196
Hsp92I	GRCGYC	1 cut(s)	932
HspAI	GCGC	5 cut(s)	207, 932, 1119, 1158, 1734
KasI	GGCGCC	1 cut(s)	931
KflI	GGGWCCC	1 cut(s)	2068
KpnI	GGTACC	2 cut(s)	1335, 1920
Ksp22I	TGATCA	2 cut(s)	481, 1393
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	5 cut(s)	184, 946, 1037, 1516, 2039
Lsp1109I	GCAGC	6 cut(s)	1108, 1124, 1167, 1609, 2180, 2551
MabI	ACCWGGT	1 cut(s)	1270
MaeI	CTAG	5 cut(s)	765, 842, 1590, 1827, 1953
MaeII	ACGT	2 cut(s)	1488, 2196
MaeIII	GTNAC	4 cut(s)	136, 1016, 1707, 1859
MbiI	CCGCTC	1 cut(s)	461
MfeI	CAATTG	2 cut(s)	987, 2340
MflI	RGATCY	4 cut(s)	1098, 1675, 1687, 1823
MhlI	GDGCHC	4 cut(s)	604, 683, 1521, 2377
MlsI	TGGCCA	1 cut(s)	1875
MluI	ACGCGT	1 cut(s)	199
MluNI	TGGCCA	1 cut(s)	1875
Mly113I	GGCGCC	1 cut(s)	932
MlyI	GAGTC	7 cut(s)	260, 850, 1040, 1409, 1540, 1856, 2477
MmeI	TCCRAC	2 cut(s)	615, 2367
Mox20I	TGGCCA	1 cut(s)	1875
MroXI	GAANNNNTTC	3 cut(s)	201, 1147, 1181
MscI	TGGCCA	1 cut(s)	1875
MslI	CAYNNNNRTG	4 cut(s)	40, 344, 1751, 1803
Msp20I	TGGCCA	1 cut(s)	1875
MspI	CCGG	5 cut(s)	404, 935, 1319, 1847, 1910
MspR9I	CCNGG	9 cut(s)	404, 471, 871, 1255, 1272, 1320, 1673, 1910, 2213
MunI	CAATTG	2 cut(s)	987, 2340
MvaI	CCWGG	6 cut(s)	471, 871, 1255, 1272, 1673, 2213
MvnI	CGCG	4 cut(s)	41, 201, 207, 1512
MwoI	GCNNNNNNNGC	6 cut(s)	599, 795, 938, 1143, 1152, 2504
NarI	GGCGCC	1 cut(s)	932
NciI	CCSGG	3 cut(s)	404, 1320, 1910
NcoI	CCATGG	1 cut(s)	2421
NdeI	CATATG	2 cut(s)	1722, 2175
NheI	GCTAGC	1 cut(s)	1589
NmeAIII	GCCGAG	1 cut(s)	2548
NmuCI	GTSAC	3 cut(s)	136, 1016, 1859
NspI	RCATGY	5 cut(s)	1241, 1597, 1750, 2135, 2359
NspV	TTCGAA	1 cut(s)	195
PaeI	GCATGC	2 cut(s)	1241, 1597
PaeR7I	CTCGAG	1 cut(s)	1481
PagI	TCATGA	1 cut(s)	489
PciI	ACATGT	1 cut(s)	2355
PciSI	GCTCTTC	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PdmI	GAANNNNTTC	3 cut(s)	201, 1147, 1181
PfeI	GAWTC	2 cut(s)	237, 1012
PflMI	CCANNNNNTGG	1 cut(s)	2386
PfoI	TCCNGGA	3 cut(s)	402, 1318, 1671
PkrI	GCNGC	8 cut(s)	1123, 1139, 1157, 1511, 1599, 2170, 2407, 2566
PleI	GAGTC	7 cut(s)	259, 850, 1040, 1409, 1540, 1856, 2476
PluTI	GGCGCC	1 cut(s)	935
PpsI	GAGTC	7 cut(s)	259, 850, 1040, 1409, 1540, 1856, 2476
Ppu21I	YACGTR	2 cut(s)	1489, 2197
PpuMI	RGGWCCY	2 cut(s)	388, 2068
PscI	ACATGT	1 cut(s)	2355
PsiI	TTATAA	1 cut(s)	425
Psp124BI	GAGCTC	1 cut(s)	1521
Psp5II	RGGWCCY	2 cut(s)	388, 2068
Psp6I	CCWGG	6 cut(s)	469, 869, 1253, 1270, 1671, 2211
PspGI	CCWGG	6 cut(s)	469, 869, 1253, 1270, 1671, 2211
PspPI	GGNCC	8 cut(s)	333, 388, 456, 610, 649, 1844, 2068, 2152
PspPPI	RGGWCCY	2 cut(s)	388, 2068
PstNI	CAGNNNCTG	2 cut(s)	1078, 1871
PsuI	RGATCY	4 cut(s)	1098, 1675, 1687, 1823
RsaI	GTAC	6 cut(s)	911, 1333, 1487, 1918, 2195, 2393
RsaNI	GTAC	6 cut(s)	910, 1332, 1486, 1917, 2194, 2392
RseI	CAYNNNNRTG	4 cut(s)	40, 344, 1751, 1803
SacI	GAGCTC	1 cut(s)	1521
SapI	GCTCTTC	1 cut(s)	468
SatI	GCNGC	8 cut(s)	1122, 1138, 1156, 1510, 1598, 2169, 2406, 2565
Sau96I	GGNCC	8 cut(s)	333, 388, 456, 610, 649, 1844, 2068, 2152
SchI	GAGTC	7 cut(s)	260, 850, 1040, 1409, 1540, 1856, 2477
ScrFI	CCNGG	9 cut(s)	404, 471, 871, 1255, 1272, 1320, 1673, 1910, 2213
SduI	GDGCHC	4 cut(s)	604, 683, 1521, 2377
SexAI	ACCWGGT	1 cut(s)	1270
SfoI	GGCGCC	1 cut(s)	933
Sfr274I	CTCGAG	1 cut(s)	1481
SfuI	TTCGAA	1 cut(s)	195
SinI	GGWCC	8 cut(s)	333, 388, 456, 610, 649, 1844, 2068, 2152
SlaI	CTCGAG	1 cut(s)	1481
SmiMI	CAYNNNNRTG	4 cut(s)	40, 344, 1751, 1803
SmlI	CTYRAG	2 cut(s)	1481, 2461
SmoI	CTYRAG	2 cut(s)	1481, 2461
SnaBI	TACGTA	2 cut(s)	1489, 2197
SphI	GCATGC	2 cut(s)	1241, 1597
SspDI	GGCGCC	1 cut(s)	931
SspMI	CTAG	5 cut(s)	765, 842, 1590, 1827, 1953
SstI	GAGCTC	1 cut(s)	1521
StyD4I	CCNGG	9 cut(s)	402, 469, 869, 1253, 1270, 1318, 1671, 1908, 2211
StyI	CCWWGG	7 cut(s)	232, 764, 981, 1102, 1621, 2053, 2421
TaaI	ACNGT	5 cut(s)	56, 649, 706, 1996, 2366
TaiI	ACGT	2 cut(s)	1491, 2199
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	2 cut(s)	909, 2391
TauI	GCSGC	2 cut(s)	1512, 2408
TfiI	GAWTC	2 cut(s)	237, 1012
TscAI	CASTG	5 cut(s)	481, 1048, 1607, 2133, 2371
TseFI	GTSAC	3 cut(s)	136, 1016, 1859
TseI	GCWGC	6 cut(s)	1121, 1137, 1155, 1597, 2168, 2564
Tsp45I	GTSAC	3 cut(s)	136, 1016, 1859
TspDTI	ATGAA	9 cut(s)	284, 599, 1146, 1190, 1376, 1463, 1709, 1805, 2235
TspGWI	ACGGA	3 cut(s)	99, 1185, 1698
TspRI	CASTG	5 cut(s)	481, 1048, 1607, 2133, 2371
Van91I	CCANNNNNTGG	1 cut(s)	2386
VneI	GTGCAC	1 cut(s)	679
VpaK11BI	GGWCC	8 cut(s)	333, 388, 456, 610, 649, 1844, 2068, 2152
XapI	RAATTY	9 cut(s)	284, 364, 532, 740, 1068, 1205, 1811, 2004, 2330
XbaI	TCTAGA	1 cut(s)	1826
XceI	RCATGY	5 cut(s)	1241, 1597, 1750, 2135, 2359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	1481
XmaJI	CCTAGG	1 cut(s)	764
XmnI	GAANNNNTTC	3 cut(s)	201, 1147, 1181
XspI	CTAG	5 cut(s)	765, 842, 1590, 1827, 1953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.