Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001414

Physical Location & Seq

Genomic Coordinates Reverse (-)

6043603 .. 6045706

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTTTGGCGGTCATGGATTCAGAATTTTGCTTTCAGCCCCATACATTTTTTACAGAAGAATATCAAGATTTGATTTCCTTAATCAAAACTTAACACAGCCGGATGAGAACTCTGAGGATGAGAGGAAAACAAAGCTTGTGTCTTTCAAGAAGGCAGCAAACATGATTACAAACTCCTTCAGTAAGGGTCGAAGGAACAGTAAGGTAATGTCTTTCCCTATAGACGATGGCATTGATGCCGAGGAGCTCAAGGCAGCTCAGGAATTCCGGCAAACACTTGTATCCGAAGAACTACTTCCCTCGAAACATGACGATACTCATATGTTGCTAAGGGCCCGGAAATTTGATGTTGAGAAAACAAAGCAAATGTGGTCTGACATGCTCCAGTGGAGGCAGGAATTTGGTGCTGACACTATTATGGAGGACTTCGAGTTTAAGGAAGTTGATGAAGTCTTAAAATACTATCCACAAGGGCATCATGGAGTTGATAAGGATGGGCGGCCTGTCTACATTGAGAGACTGGGTCAAGTTGATTCTAATAAGCTGCTGCAAGTGACAACAATGGAACGGTATATAAAGTACCACATACGGGAGTTTGAGAGGACCTTTATCTGTAAATTCCCCGCCTGTTCCATTGCAGCAAAGAAGCACATTGATCAGAGTACCACAATTCTGGATGTCCAAGGAGTGGGGCTTACAAGTTTAAATAAATCTGCAAGGGAACTCATTCAGCGCCTTCAGAAGGTCGATGGTGACAATTATCCTGAGACCCTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTATGGAACACCGTCAAATCTTTCCTTGATCCCAAGACCACTGCAAAAATCAATGTTCTGGGAAATCAATATCAGAGCAAGTTGCTTGAAATAATTGAAGCTACTGAGCTACCAGAGTTTTTGGGTGGTAGTTGCACTTGTGCCAATAAGGGTAGCTGCATGATCTCTGATAAGGGCCCGTGGAATGATCCAGAAATAATGAAGGTGATTTTGTACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008525 GO:0008526 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019637 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032501 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0044703 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048193 GO:0048367 GO:0048468 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0061458 GO:0071702 GO:0071704 GO:0071840 GO:0090407 GO:0090567 GO:0097164 GO:0120009 GO:0120010 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

346

Amino Acids

39.78

Weight (kDa)

7.05

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	153 - 315	8.5e-30	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16380 AT2G16380 AT2G16380 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT2G21540 AT4G34580 AT4G34580 AT4G39180 AT4G39180 AT4G39180
fragaria_vesca	FvH4_2g09420 FvH4_2g09420 FvH4_2g09420 FvH4_2g09490 FvH4_2g09490
malus_domestica	MD05G1062700.v1.1 MD05G1062800.v1.1 MD05G1062900.v1.1 MD10G1070400.v1.1 MD10G1070500.v1.1
prunus_persica	Prupe.8G092000_v2.0.a1 Prupe.8G092100_v2.0.a1 Prupe.8G092200_v2.0.a1
pyrus_communis	pycom05g05440 pycom10g05620 pycom10g05630
rosa_chinensis	RchiOBHm_Chr6g0265701 RchiOBHm_Chr6g0265771
rosa_laevigata	RLG00000014161 RLG00000014165
rosa_multiflora	Rmu_co8114364.1_g000001 Rmu_sc0000208.1_g000028 Rmu_sc0008535.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432510 Rroxscaffold_175G00432560 Rroxscaffold_7G00202430
rosa_rugosa	Rorug06G0018500 Rorug06G0019000
rosa_samantha	Rh6AG140700 Rh6AG141500 Rh6BG141100 Rh6BG141400 Rh6CG137700 Rh6CG138000 Rh6DG124600 Rh6DG125000
rosa_wichuraiana	Rw6G012170 Rw6G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	688
AccI	GTMKAC	1 cut(s)	507
AciI	CCGC	3 cut(s)	9, 499, 624
AclWI	GGATC	2 cut(s)	839, 998
AcsI	RAATTY	5 cut(s)	24, 263, 341, 398, 617
AcuI	CTGAAG	2 cut(s)	163, 722
AfaI	GTAC	3 cut(s)	581, 664, 1031
AfiI	CCNNNNNNNGG	3 cut(s)	589, 688, 742
AgsI	TTSAA	3 cut(s)	148, 905, 914
AluBI	AGCT	7 cut(s)	136, 247, 257, 544, 917, 925, 972
AluI	AGCT	7 cut(s)	136, 247, 257, 544, 917, 925, 972
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	2 cut(s)	511, 761
AlwI	GGATC	2 cut(s)	839, 998
AoxI	GGCC	3 cut(s)	333, 500, 991
ApaI	GGGCCC	2 cut(s)	337, 995
ApeKI	GCWGC	6 cut(s)	155, 254, 544, 547, 638, 972
ApoI	RAATTY	5 cut(s)	24, 263, 341, 398, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
Asp700I	GAANNNNTTC	2 cut(s)	294, 726
AspLEI	GCGC	1 cut(s)	735
AspS9I	GGNCC	5 cut(s)	333, 334, 603, 991, 992
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	764, 1033
AvaII	GGWCC	1 cut(s)	603
BaeGI	GKGCMC	2 cut(s)	337, 995
BaeI	ACNNNNGTAYC	2 cut(s)	264, 297
BanII	GRGCYC	3 cut(s)	249, 337, 995
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	6 cut(s)	167, 266, 531, 534, 650, 959
BccI	CCATC	3 cut(s)	221, 488, 743
BciVI	GTATCC	1 cut(s)	292
BclI	TGATCA	1 cut(s)	655
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	511, 761
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	736
BfuI	GTATCC	1 cut(s)	292
BisI	GCNGC	7 cut(s)	156, 255, 500, 545, 548, 639, 973
BlsI	GCNGC	7 cut(s)	157, 256, 501, 546, 549, 640, 974
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	5 cut(s)	333, 334, 603, 991, 992
BmiI	GGNNCC	2 cut(s)	335, 993
BmrFI	CCNGG	1 cut(s)	337
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	2 cut(s)	226, 484
BmuI	ACTGGG	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	368
Bpu10I	CCTNAGC	2 cut(s)	258, 329
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	337
BsaI	GGTCTC	1 cut(s)	761
BsaJI	CCNNGG	3 cut(s)	240, 682, 995
Bsc4I	CCNNNNNNNGG	3 cut(s)	589, 688, 742
Bse1I	ACTGG	2 cut(s)	385, 525
Bse3DI	GCAATG	1 cut(s)	633
BseDI	CCNNGG	3 cut(s)	240, 682, 995
BseGI	GGATG	4 cut(s)	109, 124, 499, 682
BseLI	CCNNNNNNNGG	3 cut(s)	589, 688, 742
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	4 cut(s)	105, 272, 756, 912
BseNI	ACTGG	2 cut(s)	385, 525
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	2 cut(s)	337, 995
BseXI	GCAGC	6 cut(s)	167, 266, 531, 534, 650, 959
BshFI	GGCC	3 cut(s)	335, 502, 993
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	3 cut(s)	101, 268, 337
BslI	CCNNNNNNNGG	3 cut(s)	589, 688, 742
BsmAI	GTCTC	2 cut(s)	511, 761
BsnI	GGCC	3 cut(s)	335, 502, 993
Bso31I	GGTCTC	1 cut(s)	761
Bsp120I	GGGCCC	2 cut(s)	333, 991
Bsp1286I	GDGCHC	3 cut(s)	249, 337, 995
Bsp1407I	TGTACA	1 cut(s)	1029
Bsp143I	GATC	4 cut(s)	655, 844, 978, 1003
BspACI	CCGC	3 cut(s)	9, 499, 624
BspANI	GGCC	3 cut(s)	335, 502, 993
BspCNI	CTCAG	4 cut(s)	106, 271, 757, 913
BspLI	GGNNCC	2 cut(s)	335, 993
BspPI	GGATC	2 cut(s)	839, 998
BspTNI	GGTCTC	1 cut(s)	761
BsrDI	GCAATG	1 cut(s)	633
BsrGI	TGTACA	1 cut(s)	1029
BsrI	ACTGG	2 cut(s)	385, 525
BssECI	CCNNGG	3 cut(s)	240, 682, 995
BssMI	GATC	4 cut(s)	655, 844, 978, 1003
BssT1I	CCWWGG	1 cut(s)	682
Bst4CI	ACNGT	5 cut(s)	200, 570, 779, 829, 1034
BstAUI	TGTACA	1 cut(s)	1029
BstDEI	CTNAG	5 cut(s)	114, 258, 329, 765, 921
BstDSI	CCRYGG	1 cut(s)	995
BstENI	CCTNNNNNAGG	1 cut(s)	740
BstF5I	GGATG	4 cut(s)	109, 124, 499, 682
BstH2I	RGCGCY	1 cut(s)	736
BstHHI	GCGC	1 cut(s)	735
BstKTI	GATC	4 cut(s)	658, 847, 981, 1006
BstMAI	GTCTC	2 cut(s)	511, 761
BstMBI	GATC	4 cut(s)	655, 844, 978, 1003
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	2 cut(s)	337, 995
BstV1I	GCAGC	6 cut(s)	167, 266, 531, 534, 650, 959
BstXI	CCANNNNNNTGG	1 cut(s)	673
BsuI	GTATCC	1 cut(s)	292
BsuRI	GGCC	3 cut(s)	335, 502, 993
BtgI	CCRYGG	1 cut(s)	995
BtsCI	GGATG	4 cut(s)	109, 124, 499, 682
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	2 cut(s)	392, 855
CfoI	GCGC	1 cut(s)	735
Cfr13I	GGNCC	5 cut(s)	333, 334, 603, 991, 992
Csp6I	GTAC	3 cut(s)	580, 663, 1030
CviAII	CATG	6 cut(s)	14, 163, 308, 379, 479, 976
CviQI	GTAC	3 cut(s)	580, 663, 1030
DdeI	CTNAG	5 cut(s)	114, 258, 329, 765, 921
DpnI	GATC	4 cut(s)	657, 846, 980, 1005
DpnII	GATC	4 cut(s)	655, 844, 978, 1003
DraI	TTTAAA	1 cut(s)	705
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	682
Eco24I	GRGCYC	3 cut(s)	249, 337, 995
Eco31I	GGTCTC	1 cut(s)	761
Eco47I	GGWCC	1 cut(s)	603
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	2 cut(s)	163, 722
EcoICRI	GAGCTC	1 cut(s)	247
EcoNI	CCTNNNNNAGG	1 cut(s)	740
EcoO109I	RGGNCCY	3 cut(s)	333, 603, 991
EcoRI	GAATTC	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	682
EcoT38I	GRGCYC	3 cut(s)	249, 337, 995
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	6 cut(s)	17, 166, 311, 382, 482, 979
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	6 cut(s)	13, 162, 307, 378, 478, 975
FauI	CCCGC	1 cut(s)	631
FauNDI	CATATG	1 cut(s)	321
FbaI	TGATCA	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	7 cut(s)	156, 255, 500, 545, 548, 639, 973
FokI	GGATG	4 cut(s)	116, 131, 506, 689
FriOI	GRGCYC	3 cut(s)	249, 337, 995
Fsp4HI	GCNGC	7 cut(s)	156, 255, 500, 545, 548, 639, 973
GlaI	GCGC	1 cut(s)	734
GluI	GCNGC	7 cut(s)	156, 255, 500, 545, 548, 639, 973
GsuI	CTGGAG	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	736
HaeIII	GGCC	3 cut(s)	335, 502, 993
HapII	CCGG	3 cut(s)	101, 268, 337
HhaI	GCGC	1 cut(s)	735
Hin1II	CATG	6 cut(s)	17, 166, 311, 382, 482, 979
Hin6I	GCGC	1 cut(s)	733
HinP1I	GCGC	1 cut(s)	733
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	2 cut(s)	18, 533
HpaII	CCGG	3 cut(s)	101, 268, 337
HphI	GGTGA	2 cut(s)	764, 1033
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	8 cut(s)	23, 115, 286, 376, 660, 741, 891, 985
Hpy188III	TCNNGA	7 cut(s)	66, 148, 260, 674, 764, 804, 1007
Hpy8I	GTNNAC	1 cut(s)	508
HpyAV	CCTTC	6 cut(s)	145, 186, 187, 736, 746, 1012
HpyCH4III	ACNGT	5 cut(s)	200, 570, 779, 829, 1034
HpyCH4V	TGCA	6 cut(s)	550, 638, 716, 860, 951, 975
HpyF3I	CTNAG	5 cut(s)	114, 258, 329, 765, 921
Hsp92II	CATG	6 cut(s)	17, 166, 311, 382, 482, 979
HspAI	GCGC	1 cut(s)	733
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	4 cut(s)	655, 844, 978, 1003
LmnI	GCTCC	2 cut(s)	244, 387
Lsp1109I	GCAGC	6 cut(s)	167, 266, 531, 534, 650, 959
LweI	GCATC	2 cut(s)	226, 484
MaeIII	GTNAC	2 cut(s)	553, 752
MalI	GATC	4 cut(s)	657, 846, 980, 1005
MboI	GATC	4 cut(s)	655, 844, 978, 1003
MboII	GAAGA	2 cut(s)	69, 299
MhlI	GDGCHC	3 cut(s)	249, 337, 995
MluCI	AATT	8 cut(s)	24, 263, 341, 398, 617, 669, 757, 909
MnlI	CCTC	7 cut(s)	109, 117, 235, 310, 384, 415, 594
MroXI	GAANNNNTTC	2 cut(s)	294, 726
MseI	TTAA	5 cut(s)	81, 92, 435, 455, 704
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	3 cut(s)	101, 268, 337
MspR9I	CCNGG	1 cut(s)	337
NciI	CCSGG	1 cut(s)	337
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	4 cut(s)	655, 844, 978, 1003
NlaIII	CATG	6 cut(s)	17, 166, 311, 382, 482, 979
NlaIV	GGNNCC	2 cut(s)	335, 993
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	2 cut(s)	553, 752
NspI	RCATGY	1 cut(s)	382
PdmI	GAANNNNTTC	2 cut(s)	294, 726
PfeI	GAWTC	2 cut(s)	18, 533
PflFI	GACNNNGTC	1 cut(s)	522
PflMI	CCANNNNNTGG	1 cut(s)	688
PkrI	GCNGC	7 cut(s)	157, 256, 501, 546, 549, 640, 974
PpuMI	RGGWCCY	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	603
PspN4I	GGNNCC	2 cut(s)	335, 993
PspOMI	GGGCCC	2 cut(s)	333, 991
PspPI	GGNCC	5 cut(s)	333, 334, 603, 991, 992
PspPPI	RGGWCCY	1 cut(s)	603
PsyI	GACNNNGTC	1 cut(s)	522
RsaI	GTAC	3 cut(s)	581, 664, 1031
RsaNI	GTAC	3 cut(s)	580, 663, 1030
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	5 cut(s)	81, 92, 435, 455, 704
SatI	GCNGC	7 cut(s)	156, 255, 500, 545, 548, 639, 973
Sau3AI	GATC	4 cut(s)	655, 844, 978, 1003
Sau96I	GGNCC	5 cut(s)	333, 334, 603, 991, 992
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	3 cut(s)	249, 337, 995
SfaNI	GCATC	2 cut(s)	226, 484
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	8 cut(s)	24, 263, 341, 398, 617, 669, 757, 909
SsiI	CCGC	3 cut(s)	9, 499, 624
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	5 cut(s)	200, 570, 779, 829, 1034
TaqI	TCGA	4 cut(s)	190, 302, 429, 747
TasI	AATT	8 cut(s)	24, 263, 341, 398, 617, 669, 757, 909
TatI	WGTACW	1 cut(s)	1029
TauI	GCSGC	1 cut(s)	502
TfiI	GAWTC	2 cut(s)	18, 533
Tru1I	TTAA	5 cut(s)	81, 92, 435, 455, 704
Tru9I	TTAA	5 cut(s)	81, 92, 435, 455, 704
TscAI	CASTG	2 cut(s)	392, 862
TseFI	GTSAC	2 cut(s)	553, 752
TseI	GCWGC	6 cut(s)	155, 254, 544, 547, 638, 972
Tsp45I	GTSAC	2 cut(s)	553, 752
TspDTI	ATGAA	3 cut(s)	462, 775, 1031
TspRI	CASTG	2 cut(s)	392, 862
Tth111I	GACNNNGTC	1 cut(s)	522
Van91I	CCANNNNNTGG	1 cut(s)	688
VpaK11BI	GGWCC	1 cut(s)	603
XagI	CCTNNNNNAGG	1 cut(s)	740
XapI	RAATTY	5 cut(s)	24, 263, 341, 398, 617
XceI	RCATGY	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	507
XmnI	GAANNNNTTC	2 cut(s)	294, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.