Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002528

Physical Location & Seq

Genomic Coordinates Reverse (-)

1920410 .. 1922933

Gene Structure 2524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAGATTATTGCCTTGGAATTGCTCACTGTTCTGCTGGAGAACCCTACAGATGACAGTGTTGAAGTCGCTGTTGGCTTTGTCACCGAGTGTGGATCGATTACTGCAGGACCTTTCGCCTAAAGGGTTGCACGGCATCTTTGAACGCTTTCGTGGAATTCTTCATGAGGGAGAAATAGACAAGAGAGTTCAATATCTGATTGAAAACTTATTTGCAATACGGAAAGCGAAGTTTCAGGGGCACCCAGCTGTTCGTCCAGAACTGGACCTTGTAGAGCAGGAAGACCAGTTGACACATGAAATTTCTCTTGAAGAGGAAATAGATTCAGAAGTTACCCTTGATCTTTTCAAGGTCGATCCTAATTTCCTTGAGAATGAGAAGCGCTATGAAGAACTGAAGAAAACTATACTTGGTGAGGATTCTGAAGATGAAGAAGGTTCTGATGCAGCTTCAGATGGTGAAGATGACGATGATGATGATGATGAGGAATCTGAGGAAGAGGATGAGGAGCAGATGCAGATAAGAGACGAGACAGAAACAAATCTAGTGAATCTTAGAAGAACTATCTATCTTACAATCATGTCCAGTGTAGATTTTGAGGAGGCGGGTCATAAGCTCCTGAAGATTAAACTTGAGCCCGGTCAAGAGATGGAACTATGTGTCATGCTTTTGGAATGTTGCAGTCAAGAAAGAACCTACCTCCGGTATTATGGTCTTTTGGGCCAAAGGTTCTGCATGATCAACAAAGTCCACCAGGAAAATTTCGAGAAATGCTTTGTGCAACAGTATTCCATGATCCACCGGCTTGAAACAAATAAGCTACGGAATGTTGCAAAGTTCTTTGCCCATTTACTCGGCACAGACGCCCTTCCTTGGCATGTGTTGGCCTATATACGATTGACTGAAGAGGATACTACTTCATCTTCTCGTATTTTTATCGATCCTTTTCCAGGAATTGTCGGAGCATCTTGGTATCCGTTTGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071006 GO:0071012 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

330

Amino Acids

38.38

Weight (kDa)

4.62

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MA3	PF02847	185 - 291	2.9e-31	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80930
fragaria_vesca	FvH4_3g01450 FvH4_3g43230 FvH4_3g43240 FvH4_3g43240
malus_domestica	MD03G1023500.v1.1 MD11G1028600.v1.1
prunus_persica	Prupe.6G022700_v2.0.a1 Prupe.6G022700_v2.0.a1
pyrus_communis	pycom03g02010 pycom11g02210
rosa_chinensis	RchiOBHm_Chr5g0002291 RchiOBHm_Chr5g0077281 RchiOBHm_Chr5g0077291
rosa_laevigata	RLG00000031014 RLG00000036681 RLG00000036682
rosa_multiflora	Rmu_co8446135.1_g000001 Rmu_sc0000433.1_g000042 Rmu_sc0001492.1_g000008 Rmu_sc0005576.1_g000001 Rmu_sc0006137.1_g000009 Rmu_sc0008383.1_g000001 Rmu_sc0013155.1_g000012 Rmu_ssc0000410.1_g000040
rosa_roxburghii	Rroxscaffold_1G00004680 Rroxscaffold_1G00073650
rosa_rugosa	Rorug04G0394900 Rorug05G0453500
rosa_samantha	Rh5AG017700 Rh5AG508400 Rh5AG508500 Rh5BG020300 Rh5BG529600 Rh5CG019100 Rh5CG019400 Rh5CG554100 Rh5DG018300 Rh5DG542200
rosa_wichuraiana	Rw5G046900 Rw5G046910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	240
AciI	CCGC	1 cut(s)	605
AclWI	GGATC	4 cut(s)	102, 350, 790, 935
AcsI	RAATTY	3 cut(s)	156, 300, 760
AcuI	CTGAAG	5 cut(s)	416, 435, 444, 641, 924
AcyI	GRCGYC	1 cut(s)	864
AdeI	CACNNNGTG	1 cut(s)	89
AfeI	AGCGCT	1 cut(s)	383
AfiI	CCNNNNNNNGG	3 cut(s)	702, 873, 950
AgsI	TTSAA	7 cut(s)	64, 143, 191, 203, 311, 349, 809
AjnI	CCWGG	2 cut(s)	753, 949
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	4 cut(s)	248, 449, 616, 820
AluI	AGCT	4 cut(s)	248, 449, 616, 820
Alw26I	GTCTC	2 cut(s)	519, 524
AlwI	GGATC	4 cut(s)	102, 350, 790, 935
Aor51HI	AGCGCT	1 cut(s)	383
AoxI	GGCC	2 cut(s)	721, 885
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	3 cut(s)	156, 300, 760
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	3 cut(s)	109, 265, 721
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	3 cut(s)	75, 425, 470
AvaII	GGWCC	2 cut(s)	109, 265
BaeGI	GKGCMC	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	2 cut(s)	449, 643
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	2 cut(s)	755, 951
BciVI	GTATCC	2 cut(s)	904, 984
BclI	TGATCA	1 cut(s)	738
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	2 cut(s)	519, 524
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	2 cut(s)	47, 104
BfoI	RGCGCY	1 cut(s)	385
BfuI	GTATCC	2 cut(s)	904, 984
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	3 cut(s)	639, 755, 951
Bme18I	GGWCC	2 cut(s)	109, 265
BmgT120I	GGNCC	3 cut(s)	109, 265, 721
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	3 cut(s)	639, 755, 951
BmsI	GCATC	4 cut(s)	144, 433, 504, 974
BpiI	GAAGAC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	58
BpuEI	CTTGAG	2 cut(s)	389, 653
BpuMI	CCSGG	1 cut(s)	639
Bsa29I	ATCGAT	2 cut(s)	97, 939
BsaHI	GRCGYC	1 cut(s)	864
BsaJI	CCNNGG	2 cut(s)	14, 872
BsaWI	WCCGGW	1 cut(s)	702
Bsc4I	CCNNNNNNNGG	3 cut(s)	702, 873, 950
Bse118I	RCCGGY	1 cut(s)	801
Bse1I	ACTGG	3 cut(s)	267, 286, 585
BseBI	CCWGG	2 cut(s)	755, 951
BseCI	ATCGAT	2 cut(s)	97, 939
BseDI	CCNNGG	2 cut(s)	14, 872
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	3 cut(s)	702, 873, 950
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	3 cut(s)	267, 286, 585
BseRI	GAGGAG	2 cut(s)	521, 614
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	458
BseYI	CCCAGC	1 cut(s)	244
BshFI	GGCC	2 cut(s)	723, 887
BshNI	GGYRCC	1 cut(s)	240
BshVI	ATCGAT	2 cut(s)	97, 939
BsiSI	CCGG	3 cut(s)	639, 703, 802
BslI	CCNNNNNNNGG	3 cut(s)	702, 873, 950
BsmAI	GTCTC	2 cut(s)	519, 524
BsmBI	CGTCTC	1 cut(s)	519
BsnI	GGCC	2 cut(s)	723, 887
Bsp1286I	GDGCHC	2 cut(s)	243, 639
Bsp143I	GATC	6 cut(s)	94, 340, 355, 738, 795, 940
BspACI	CCGC	1 cut(s)	605
BspANI	GGCC	2 cut(s)	723, 887
BspCNI	CTCAG	1 cut(s)	484
BspDI	ATCGAT	2 cut(s)	97, 939
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	242
BspMAI	CTGCAG	1 cut(s)	108
BspPI	GGATC	4 cut(s)	102, 350, 790, 935
BspT107I	GGYRCC	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	801
BsrI	ACTGG	3 cut(s)	267, 286, 585
BssAI	RCCGGY	1 cut(s)	801
BssECI	CCNNGG	2 cut(s)	14, 872
BssMI	GATC	6 cut(s)	94, 340, 355, 738, 795, 940
BssNI	GRCGYC	1 cut(s)	864
BssT1I	CCWWGG	2 cut(s)	14, 872
Bst2UI	CCWGG	2 cut(s)	755, 951
Bst4CI	ACNGT	3 cut(s)	30, 58, 786
Bst6I	CTCTTC	3 cut(s)	306, 492, 900
BstACI	GRCGYC	1 cut(s)	864
BstDEI	CTNAG	2 cut(s)	492, 554
BstENI	CCTNNNNNAGG	1 cut(s)	948
BstF5I	GGATG	1 cut(s)	508
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	6 cut(s)	97, 343, 358, 741, 798, 943
BstMAI	GTCTC	2 cut(s)	519, 524
BstMBI	GATC	6 cut(s)	94, 340, 355, 738, 795, 940
BstNI	CCWGG	2 cut(s)	755, 951
BstNSI	RCATGY	1 cut(s)	881
BstSCI	CCNGG	3 cut(s)	637, 753, 949
BstSFI	CTRYAG	2 cut(s)	47, 104
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	458
BstV2I	GAAGAC	1 cut(s)	288
Bsu15I	ATCGAT	2 cut(s)	97, 939
BsuI	GTATCC	2 cut(s)	904, 984
BsuRI	GGCC	2 cut(s)	723, 887
BsuTUI	ATCGAT	2 cut(s)	97, 939
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	3 cut(s)	26, 63, 592
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	801
Cfr13I	GGNCC	3 cut(s)	109, 265, 721
ClaI	ATCGAT	2 cut(s)	97, 939
CseI	GACGC	1 cut(s)	872
CviAII	CATG	7 cut(s)	164, 296, 580, 664, 736, 793, 878
CviJI	RGCY	9 cut(s)	77, 248, 449, 616, 637, 723, 805, 820, 887
CviKI_1	RGCY	9 cut(s)	77, 248, 449, 616, 637, 723, 805, 820, 887
DdeI	CTNAG	2 cut(s)	492, 554
DpnI	GATC	6 cut(s)	96, 342, 357, 740, 797, 942
DpnII	GATC	6 cut(s)	94, 340, 355, 738, 795, 940
DraIII	CACNNNGTG	1 cut(s)	89
Eam1104I	CTCTTC	3 cut(s)	306, 492, 900
EarI	CTCTTC	3 cut(s)	306, 492, 900
Eco130I	CCWWGG	2 cut(s)	14, 872
Eco24I	GRGCYC	1 cut(s)	639
Eco47I	GGWCC	2 cut(s)	109, 265
Eco47III	AGCGCT	1 cut(s)	383
Eco57I	CTGAAG	5 cut(s)	416, 435, 444, 641, 924
EcoNI	CCTNNNNNAGG	1 cut(s)	948
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	156
EcoRII	CCWGG	2 cut(s)	753, 949
EcoT14I	CCWWGG	2 cut(s)	14, 872
EcoT38I	GRGCYC	1 cut(s)	639
ErhI	CCWWGG	2 cut(s)	14, 872
Esp3I	CGTCTC	1 cut(s)	519
FaeI	CATG	7 cut(s)	167, 299, 583, 667, 739, 796, 881
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	7 cut(s)	163, 295, 579, 663, 735, 792, 877
FauI	CCCGC	1 cut(s)	598
FbaI	TGATCA	1 cut(s)	738
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	1 cut(s)	447
GsaI	CCCAGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	2 cut(s)	723, 887
HapII	CCGG	3 cut(s)	639, 703, 802
HgaI	GACGC	1 cut(s)	872
HhaI	GCGC	1 cut(s)	384
Hin1I	GRCGYC	1 cut(s)	864
Hin1II	CATG	7 cut(s)	167, 299, 583, 667, 739, 796, 881
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	4 cut(s)	323, 419, 488, 550
HpaII	CCGG	3 cut(s)	639, 703, 802
HphI	GGTGA	3 cut(s)	75, 425, 470
Hpy166II	GTNNAC	2 cut(s)	291, 751
Hpy188I	TCNGA	7 cut(s)	198, 328, 424, 442, 454, 493, 962
Hpy188III	TCNNGA	7 cut(s)	164, 257, 308, 619, 644, 686, 766
Hpy8I	GTNNAC	2 cut(s)	291, 751
HpyAV	CCTTC	2 cut(s)	428, 878
HpyCH4III	ACNGT	3 cut(s)	30, 58, 786
HpyCH4V	TGCA	9 cut(s)	106, 130, 215, 446, 517, 681, 735, 781, 833
HpyF3I	CTNAG	2 cut(s)	492, 554
Hsp92I	GRCGYC	1 cut(s)	864
Hsp92II	CATG	7 cut(s)	167, 299, 583, 667, 739, 796, 881
HspAI	GCGC	1 cut(s)	382
Ksp22I	TGATCA	1 cut(s)	738
Kzo9I	GATC	6 cut(s)	94, 340, 355, 738, 795, 940
LmnI	GCTCC	3 cut(s)	508, 621, 962
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	4 cut(s)	144, 433, 504, 974
MaeI	CTAG	1 cut(s)	545
MaeIII	GTNAC	2 cut(s)	81, 331
MalI	GATC	6 cut(s)	96, 342, 357, 740, 797, 942
MboI	GATC	6 cut(s)	94, 340, 355, 738, 795, 940
MhlI	GDGCHC	2 cut(s)	243, 639
MluCI	AATT	6 cut(s)	19, 156, 300, 361, 760, 954
MmeI	TCCRAC	1 cut(s)	940
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	1 cut(s)	627
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	3 cut(s)	639, 703, 802
MspR9I	CCNGG	3 cut(s)	639, 755, 951
MvaI	CCWGG	2 cut(s)	755, 951
NciI	CCSGG	1 cut(s)	639
NdeII	GATC	6 cut(s)	94, 340, 355, 738, 795, 940
NlaIII	CATG	7 cut(s)	167, 299, 583, 667, 739, 796, 881
NlaIV	GGNNCC	1 cut(s)	242
NmeAIII	GCCGAG	1 cut(s)	834
NmuCI	GTSAC	1 cut(s)	81
NspI	RCATGY	1 cut(s)	881
PagI	TCATGA	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	4 cut(s)	323, 419, 488, 550
PfoI	TCCNGGA	1 cut(s)	949
PkrI	GCNGC	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	753, 949
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	2 cut(s)	753, 949
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	3 cut(s)	109, 265, 721
PspPPI	RGGWCCY	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	108
PvuII	CAGCTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	6 cut(s)	94, 340, 355, 738, 795, 940
Sau96I	GGNCC	3 cut(s)	109, 265, 721
ScrFI	CCNGG	3 cut(s)	639, 755, 951
SduI	GDGCHC	2 cut(s)	243, 639
SfaNI	GCATC	4 cut(s)	144, 433, 504, 974
SfcI	CTRYAG	2 cut(s)	47, 104
SinI	GGWCC	2 cut(s)	109, 265
SmlI	CTYRAG	2 cut(s)	368, 632
SmoI	CTYRAG	2 cut(s)	368, 632
Sse9I	AATT	6 cut(s)	19, 156, 300, 361, 760, 954
SsiI	CCGC	1 cut(s)	605
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	3 cut(s)	637, 753, 949
StyI	CCWWGG	2 cut(s)	14, 872
TaaI	ACNGT	3 cut(s)	30, 58, 786
TaqI	TCGA	4 cut(s)	97, 354, 765, 939
TasI	AATT	6 cut(s)	19, 156, 300, 361, 760, 954
TfiI	GAWTC	4 cut(s)	323, 419, 488, 550
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	3 cut(s)	33, 63, 592
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	5 cut(s)	152, 312, 402, 444, 909
TspGWI	ACGGA	3 cut(s)	235, 838, 966
TspRI	CASTG	3 cut(s)	33, 63, 592
VpaK11BI	GGWCC	2 cut(s)	109, 265
XagI	CCTNNNNNAGG	1 cut(s)	948
XapI	RAATTY	3 cut(s)	156, 300, 760
XceI	RCATGY	1 cut(s)	881
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.