pycom11g06000

SelT-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003155
Physical Location & Seq
Reverse (-)
4609904 .. 4611117
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 681 bp
ATGGACCGAGCACAGCTTGTTCTGCTAGGGCTACCACTCTTCCTCTTCTGCACCGACCTCCTAAACCTCTTTACTCCGCCCCCACCTCCGCCCCACAAGCCTCCTCACCACCACCATCCCCACCTCCAACACCAGCCTCCTCCAGTCGCCAAAGAAACCTTAGACTTACCCTCACAGAAACCAAGCGGTTTTGGGGCAATCGGCGTCGGCAGCACGGTCAAAATTAGCTTCTGCACTTCTTGCTCTTACAAGGGGAATGCAGTAACAATGACGAAGATGTTGGAGGCCGCTTTTCCTGGAATCCATGTTGATCTTTCGAACTATCCTCCGCCCCTTCCAAAGCGTGTGGTCAGCAAGCTGGTTCCGGTTGCTCAAGTTGTAGTTTTTGGGATTGTAATGGCAGGCGAGCATATTTTTCCGATGTTGGGGTTTGCAACACCTCCTGCTTGGTATTATTCTCTGCGTGCAAATAGATTTGGTACCATTGCATCCACTTTGCTTCTTGGCAATGCATTGCAGTCCTTCCTCCAAGGCACTGGTGCTTTCGAAGTTTACCTCAACGATGAATTGGTTTTCTCTAAGCTGAAGGAGGGAAGATTTCCGGGTGAGCTTGAACTAAGAGATGCCATTGCGAGTAAGTTGGGTAGTTCAAAAATCACAGACTCAGCGTTAAGGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rdx

Protein Analysis

227

Amino Acids

24.52

Weight (kDa)

8.99

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 72 - 210 1.2e-18 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 479
AccB1I GGYRCC 1 cut(s) 479
AciI CCGC 5 cut(s) 77, 89, 186, 288, 329
AcuI CTGAAG 1 cut(s) 605
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 1 cut(s) 425
AgsI TTSAA 2 cut(s) 614, 651
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 5 cut(s) 16, 228, 358, 583, 610
AluI AGCT 5 cut(s) 16, 228, 358, 583, 610
Alw21I GWGCWC 1 cut(s) 13
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 210
Asp718I GGTACC 1 cut(s) 479
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 603
AsuHPI GGTGA 2 cut(s) 98, 617
AsuII TTCGAA 2 cut(s) 317, 546
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 222
BccI CCATC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 297
BcnI CCSGG 1 cut(s) 603
BfaI CTAG 1 cut(s) 26
BisI GCNGC 2 cut(s) 211, 288
BlsI GCNGC 2 cut(s) 212, 289
Bme1390I CCNGG 2 cut(s) 297, 603
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 363, 481
BmrFI CCNGG 2 cut(s) 297, 603
BmsI GCATC 2 cut(s) 497, 613
BpmI CTGGAG 1 cut(s) 126
Bpu14I TTCGAA 2 cut(s) 317, 546
BpuEI CTTGAG 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 603
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 529
BsaWI WCCGGW 1 cut(s) 364
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 2 cut(s) 143, 541
Bse3DI GCAATG 4 cut(s) 483, 512, 514, 627
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 529
BseGI GGATG 2 cut(s) 115, 488
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 4 cut(s) 483, 512, 514, 627
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 2 cut(s) 143, 541
BseRI GAGGAG 2 cut(s) 93, 129
BseXI GCAGC 1 cut(s) 222
BsgI GTGCAG 2 cut(s) 34, 217
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 479
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 2 cut(s) 365, 602
BslI CCNNNNNNNGG 1 cut(s) 425
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 1 cut(s) 287
Bsp119I TTCGAA 2 cut(s) 317, 546
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 5 cut(s) 77, 89, 186, 288, 329
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 677
BspLI GGNNCC 2 cut(s) 363, 481
BspT104I TTCGAA 2 cut(s) 317, 546
BspT107I GGYRCC 1 cut(s) 479
BsrDI GCAATG 4 cut(s) 483, 512, 514, 627
BsrI ACTGG 2 cut(s) 143, 541
BssECI CCNNGG 1 cut(s) 529
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 529
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 2 cut(s) 44, 50
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 240
BstBI TTCGAA 2 cut(s) 317, 546
BstC8I GCNNGC 4 cut(s) 356, 403, 407, 465
BstDEI CTNAG 5 cut(s) 160, 579, 617, 664, 678
BstF5I GGATG 2 cut(s) 115, 488
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 4 cut(s) 22, 97, 210, 240
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 2 cut(s) 295, 601
BstV1I GCAGC 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 536
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 2 cut(s) 115, 488
BtsIMutI CAGTG 1 cut(s) 534
Cac8I GCNNGC 4 cut(s) 356, 403, 407, 465
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 480
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviAII CATG 1 cut(s) 305
CviJI RGCY 9 cut(s) 16, 31, 100, 136, 228, 287, 358, 583, 610
CviKI_1 RGCY 9 cut(s) 16, 31, 100, 136, 228, 287, 358, 583, 610
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 5 cut(s) 160, 579, 617, 664, 678
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 44, 50
EarI CTCTTC 2 cut(s) 44, 50
EciI GGCGGA 3 cut(s) 66, 78, 318
Eco130I CCWWGG 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 605
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 529
EcoT22I ATGCAT 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 529
FaeI CATG 1 cut(s) 308
FaiI YATR 2 cut(s) 306, 411
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 211, 288
FokI GGATG 2 cut(s) 102, 475
Fsp4HI GCNGC 2 cut(s) 211, 288
FspBI CTAG 1 cut(s) 26
GluI GCNGC 2 cut(s) 211, 288
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 287
HapII CCGG 2 cut(s) 365, 602
HgaI GACGC 1 cut(s) 193
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 1 cut(s) 308
HinfI GANTC 2 cut(s) 300, 662
HpaII CCGG 2 cut(s) 365, 602
HphI GGTGA 2 cut(s) 98, 617
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 1 cut(s) 420
Hpy8I GTNNAC 1 cut(s) 553
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 3 cut(s) 344, 532, 580
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 8 cut(s) 51, 234, 260, 434, 467, 488, 512, 517
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 97, 210, 240
HpyF3I CTNAG 5 cut(s) 160, 579, 617, 664, 678
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 1 cut(s) 308
KpnI GGTACC 1 cut(s) 483
Kzo9I GATC 1 cut(s) 310
Lsp1109I GCAGC 1 cut(s) 222
LweI GCATC 2 cut(s) 497, 613
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 262
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 4 cut(s) 31, 37, 286, 606
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 222, 566
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 2 cut(s) 151, 261
Mph1103I ATGCAT 1 cut(s) 514
MseI TTAA 1 cut(s) 671
MspI CCGG 2 cut(s) 365, 602
MspR9I CCNGG 2 cut(s) 297, 603
Mva1269I GAATGC 1 cut(s) 262
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 4 cut(s) 22, 97, 210, 240
NciI CCSGG 1 cut(s) 603
NdeII GATC 1 cut(s) 310
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 2 cut(s) 363, 481
NsiI ATGCAT 1 cut(s) 514
NspV TTCGAA 2 cut(s) 317, 546
PctI GAATGC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 300
PfoI TCCNGGA 1 cut(s) 295
PkrI GCNGC 2 cut(s) 212, 289
PleI GAGTC 1 cut(s) 656
PpsI GAGTC 1 cut(s) 656
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 363, 481
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 671
SatI GCNGC 2 cut(s) 211, 288
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 2 cut(s) 297, 603
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 2 cut(s) 497, 613
SfuI TTCGAA 2 cut(s) 317, 546
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 2 cut(s) 222, 566
SsiI CCGC 5 cut(s) 77, 89, 186, 288, 329
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 295, 601
StyI CCWWGG 1 cut(s) 529
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 2 cut(s) 317, 546
TaqII GACCGA 1 cut(s) 21
TasI AATT 2 cut(s) 222, 566
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 1 cut(s) 671
Tru9I TTAA 1 cut(s) 671
TscAI CASTG 1 cut(s) 541
TseI GCWGC 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 579
TspRI CASTG 1 cut(s) 541
VpaK11BI GGWCC 1 cut(s) 4
XspI CTAG 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.