Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004162

Physical Location & Seq

Genomic Coordinates Forward (+)

6210566 .. 6211487

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGGAAAAAAAATGTGCAAAGCTTCCAAATTTTTTTGCTTACTTTGATCACTAACTCGGGAACTAGTGACTGCGTCAACTCGACCCCCACCACGCAGAAGTCCAAAAGTCCAAACCCAATAAACCCCTTTTTCCTTACGAGAGAGAGTGGCCTTATCTCTTCTCGTCTTTCTTCCGCTGCTGCATCCCGCAACACAATGTTCGCAGCGGCGCCCTCCTCCGCCTACCTCAACCCCAAGCCCACCATCCTCCCCTCCTCCCCTCGCACGCTATCCCCGCCCCTCACAGCCGCCACCGCCACTGCCTCTAACAGCCGCCGACCAGTCGTCAAATGCCACCTGTCTTCGAATTCCCCCTCTCCCCTTTCCCAAAACCCTAAACCCTCCTCCACTCCCCTCAAAACCCTCTCCAAAGCCCTCGCCGCCGGCTCCACCGTCACCCTCATCTTCAATTTGCAATCTTTTGCTGGGAATGGTAATTCCGGCGGTGGCGGAGGTGGGTTTGGCGGCGGAGGTGGAGGGGGAGATGGGTTCCGCGGCGGGGAAGATGGGTTTGGTGGGTTTTTGAAGAGGCTGTTGTTTGGGTCGCAGACGGCCATGGCGGACGAGCCACAGTCTCAAGAGTGGGATTCGCATGGGTTACCGGCCAACATTGTTGTCCAGCTCAACAAGCTCAGTGGGTTCAAGAAATACAAGGTCTCCGAGATCTATCATGTTCTTCGATCGGCGGCGGTGGAGCACCGTCGGCACCGAAGACTCATTCTTCGAAATGGTATCCCTGAGACCCGGCGGCGTTTATACCAAAGCCCAGTTGCAGAAGGAGCTCGAGACCTTAGCCAATTGCGGGATGTTCGAGAAGGTCGATTTGGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

292

Amino Acids

31.0

Weight (kDa)

10.94

Isoelectric Point (pI)

66.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46740 AT4G09080 AT4G09080 AT4G09080
fragaria_vesca	FvH4_3g28760 FvH4_3g28760 FvH4_3g28760 FvH4_5g29410
malus_domestica	MD03G1086500.v1.1 MD11G1095600.v1.1
prunus_persica	Prupe.6G071100_v2.0.a1
pyrus_communis	pycom03g06860 pycom11g08100 pycom11g08110
rosa_chinensis	RchiOBHm_Chr5g0052291 RchiOBHm_Chr7g0222311
rosa_laevigata	RLG00000002071 RLG00000034828
rosa_multiflora	Rmu_sc0007069.1_g000009 Rmu_sc0028377.1_g000001 Rmu_sc0032875.1_g000001 Rmu_sc0032876.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028120 Rroxscaffold_3G00237120
rosa_rugosa	Rorug05G0273100 Rorug07G0207600
rosa_samantha	Rh5CG382000 Rh5DG371900 Rh7AG349900 Rh7DG346100
rosa_wichuraiana	Rw5G032630 Rw5G032670 Rw7G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	211, 747
AccII	CGCG	1 cut(s)	537
AcoI	YGGCCR	2 cut(s)	594, 645
AcsI	RAATTY	2 cut(s)	30, 349
AcyI	GRCGYC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	541, 844
AgsI	TTSAA	3 cut(s)	451, 568, 685
AhdI	GACNNNNNGTC	1 cut(s)	326
AhlI	ACTAGT	1 cut(s)	65
AjuI	GAANNNNNNNTTGG	3 cut(s)	537, 569, 849
AluBI	AGCT	4 cut(s)	24, 664, 673, 824
AluI	AGCT	4 cut(s)	24, 664, 673, 824
Alw21I	GWGCWC	2 cut(s)	741, 826
Alw26I	GTCTC	4 cut(s)	621, 703, 776, 822
Ama87I	CYCGRG	2 cut(s)	58, 825
AoxI	GGCC	3 cut(s)	151, 594, 645
ApeKI	GCWGC	3 cut(s)	179, 182, 206
ApoI	RAATTY	2 cut(s)	30, 349
ArsI	GACNNNNNNTTYG	2 cut(s)	747, 779
AspLEI	GCGC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	787
AsuHPI	GGTGA	1 cut(s)	430
AsuII	TTCGAA	2 cut(s)	347, 766
AvaI	CYCGRG	2 cut(s)	58, 825
BanI	GGYRCC	2 cut(s)	211, 747
BanII	GRGCYC	1 cut(s)	826
BbsI	GAAGAC	2 cut(s)	336, 760
Bbv12I	GWGCWC	2 cut(s)	741, 826
BbvI	GCAGC	3 cut(s)	166, 169, 218
BccI	CCATC	3 cut(s)	254, 521, 542
BceAI	ACGGC	1 cut(s)	609
BciVI	GTATCC	1 cut(s)	785
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	787
BcoDI	GTCTC	4 cut(s)	621, 703, 776, 822
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	785
BglII	AGATCT	1 cut(s)	705
Bme1390I	CCNGG	1 cut(s)	787
BmeRI	GACNNNNNGTC	1 cut(s)	326
BmeT110I	CYCGRG	2 cut(s)	58, 825
BmiI	GGNNCC	4 cut(s)	213, 430, 533, 749
BmrFI	CCNGG	1 cut(s)	787
BmrI	ACTGGG	1 cut(s)	803
BmsI	GCATC	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	803
BpiI	GAAGAC	2 cut(s)	336, 760
Bpu10I	CCTNAGC	1 cut(s)	833
Bpu14I	TTCGAA	2 cut(s)	347, 766
BpuEI	CTTGAG	1 cut(s)	603
BpuMI	CCSGG	1 cut(s)	787
BsaHI	GRCGYC	1 cut(s)	212
BsaI	GGTCTC	3 cut(s)	703, 776, 822
BsaJI	CCNNGG	2 cut(s)	535, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	683, 713
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 844
Bse118I	RCCGGY	2 cut(s)	425, 643
Bse1I	ACTGG	2 cut(s)	323, 809
BseDI	CCNNGG	2 cut(s)	535, 597
BseGI	GGATG	3 cut(s)	185, 246, 853
BseLI	CCNNNNNNNGG	2 cut(s)	541, 844
BseMII	CTCAG	2 cut(s)	688, 771
BseNI	ACTGG	2 cut(s)	323, 809
BseRI	GAGGAG	3 cut(s)	208, 247, 376
BseXI	GCAGC	3 cut(s)	166, 169, 218
BseYI	CCCAGC	1 cut(s)	467
Bsh1236I	CGCG	1 cut(s)	537
Bsh1285I	CGRYCG	1 cut(s)	725
BshFI	GGCC	3 cut(s)	153, 596, 647
BshNI	GGYRCC	2 cut(s)	211, 747
BsiEI	CGRYCG	1 cut(s)	725
BsiHKAI	GWGCWC	2 cut(s)	741, 826
BsiHKCI	CYCGRG	2 cut(s)	58, 825
BsiSI	CCGG	4 cut(s)	426, 483, 644, 787
BslI	CCNNNNNNNGG	2 cut(s)	541, 844
BsmAI	GTCTC	4 cut(s)	621, 703, 776, 822
BsnI	GGCC	3 cut(s)	153, 596, 647
Bso31I	GGTCTC	3 cut(s)	703, 776, 822
BsoBI	CYCGRG	2 cut(s)	58, 825
Bsp119I	TTCGAA	2 cut(s)	347, 766
Bsp1286I	GDGCHC	2 cut(s)	741, 826
Bsp143I	GATC	3 cut(s)	48, 705, 722
Bsp19I	CCATGG	1 cut(s)	597
BspANI	GGCC	3 cut(s)	153, 596, 647
BspCNI	CTCAG	2 cut(s)	687, 772
BspFNI	CGCG	1 cut(s)	537
BspLI	GGNNCC	4 cut(s)	213, 430, 533, 749
BspT104I	TTCGAA	2 cut(s)	347, 766
BspT107I	GGYRCC	2 cut(s)	211, 747
BspTNI	GGTCTC	3 cut(s)	703, 776, 822
BsrFI	RCCGGY	2 cut(s)	425, 643
BsrI	ACTGG	2 cut(s)	323, 809
BssAI	RCCGGY	2 cut(s)	425, 643
BssECI	CCNNGG	2 cut(s)	535, 597
BssMI	GATC	3 cut(s)	48, 705, 722
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	597
Bst4CI	ACNGT	3 cut(s)	436, 615, 743
Bst6I	CTCTTC	2 cut(s)	166, 563
BstACI	GRCGYC	1 cut(s)	212
BstBI	TTCGAA	2 cut(s)	347, 766
BstC8I	GCNNGC	2 cut(s)	269, 427
BstDEI	CTNAG	3 cut(s)	674, 780, 833
BstDSI	CCRYGG	2 cut(s)	535, 597
BstEII	GGTNACC	1 cut(s)	639
BstF5I	GGATG	3 cut(s)	185, 246, 853
BstFNI	CGCG	1 cut(s)	537
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	3 cut(s)	51, 708, 725
BstMAI	GTCTC	4 cut(s)	621, 703, 776, 822
BstMBI	GATC	3 cut(s)	48, 705, 722
BstMCI	CGRYCG	1 cut(s)	725
BstMWI	GCNNNNNNNGC	6 cut(s)	277, 296, 422, 670, 745, 821
BstPI	GGTNACC	1 cut(s)	639
BstSCI	CCNGG	1 cut(s)	785
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	3 cut(s)	166, 169, 218
BstV2I	GAAGAC	2 cut(s)	336, 760
BstX2I	RGATCY	1 cut(s)	705
BstYI	RGATCY	1 cut(s)	705
BsuI	GTATCC	1 cut(s)	785
BsuRI	GGCC	3 cut(s)	153, 596, 647
BtgI	CCRYGG	2 cut(s)	535, 597
BtsCI	GGATG	3 cut(s)	185, 246, 853
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	300, 682
Cac8I	GCNNGC	2 cut(s)	269, 427
CfoI	GCGC	1 cut(s)	214
Cfr10I	RCCGGY	2 cut(s)	425, 643
Cfr42I	CCGCGG	1 cut(s)	538
CseI	GACGC	1 cut(s)	64
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviAII	CATG	3 cut(s)	598, 635, 713
DdeI	CTNAG	3 cut(s)	674, 780, 833
DinI	GGCGCC	1 cut(s)	213
DpnI	GATC	3 cut(s)	50, 707, 724
DpnII	GATC	3 cut(s)	48, 705, 722
DriI	GACNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	2 cut(s)	594, 645
Eam1104I	CTCTTC	2 cut(s)	166, 563
Eam1105I	GACNNNNNGTC	1 cut(s)	326
EarI	CTCTTC	2 cut(s)	166, 563
EciI	GGCGGA	4 cut(s)	211, 507, 525, 617
Ecl136II	GAGCTC	1 cut(s)	824
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	826
Eco31I	GGTCTC	3 cut(s)	703, 776, 822
Eco53kI	GAGCTC	1 cut(s)	824
Eco88I	CYCGRG	2 cut(s)	58, 825
Eco91I	GGTNACC	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	824
EcoO65I	GGTNACC	1 cut(s)	639
EcoRI	GAATTC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	826
EgeI	GGCGCC	1 cut(s)	213
EheI	GGCGCC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	3 cut(s)	601, 638, 716
FaiI	YATR	4 cut(s)	599, 636, 714, 799
FatI	CATG	3 cut(s)	597, 634, 712
FauI	CCCGC	4 cut(s)	197, 285, 533, 837
FbaI	TGATCA	1 cut(s)	48
FokI	GGATG	3 cut(s)	172, 233, 860
FriOI	GRGCYC	1 cut(s)	826
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	213
GsaI	CCCAGC	1 cut(s)	471
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	3 cut(s)	153, 596, 647
HapII	CCGG	4 cut(s)	426, 483, 644, 787
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	3 cut(s)	601, 638, 716
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	2 cut(s)	629, 756
HpaII	CCGG	4 cut(s)	426, 483, 644, 787
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	703
Hpy188III	TCNNGA	5 cut(s)	60, 620, 685, 827, 854
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	747
HpyAV	CCTTC	3 cut(s)	812, 851, 864
HpyCH4III	ACNGT	3 cut(s)	436, 615, 743
HpyCH4V	TGCA	4 cut(s)	19, 185, 457, 815
HpyF10VI	GCNNNNNNNGC	6 cut(s)	277, 296, 422, 670, 745, 821
HpyF3I	CTNAG	3 cut(s)	674, 780, 833
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	601, 638, 716
HspAI	GCGC	1 cut(s)	212
KasI	GGCGCC	1 cut(s)	211
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	48
KspI	CCGCGG	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	48, 705, 722
LmnI	GCTCC	3 cut(s)	434, 736, 821
Lsp1109I	GCAGC	3 cut(s)	166, 169, 218
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	68, 436, 639
MalI	GATC	3 cut(s)	50, 707, 724
MboI	GATC	3 cut(s)	48, 705, 722
MboII	GAAGA	9 cut(s)	153, 165, 336, 439, 557, 580, 710, 755, 765
MfeI	CAATTG	1 cut(s)	839
MflI	RGATCY	1 cut(s)	705
MhlI	GDGCHC	2 cut(s)	741, 826
MluCI	AATT	5 cut(s)	30, 349, 451, 478, 839
Mly113I	GGCGCC	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	750
MroNI	GCCGGC	1 cut(s)	425
MspA1I	CMGCKG	3 cut(s)	179, 209, 537
MspI	CCGG	4 cut(s)	426, 483, 644, 787
MspR9I	CCNGG	1 cut(s)	787
MunI	CAATTG	1 cut(s)	839
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	6 cut(s)	277, 296, 422, 670, 745, 821
NaeI	GCCGGC	1 cut(s)	427
NarI	GGCGCC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	787
NcoI	CCATGG	1 cut(s)	597
NdeII	GATC	3 cut(s)	48, 705, 722
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	3 cut(s)	601, 638, 716
NlaIV	GGNNCC	4 cut(s)	213, 430, 533, 749
NmuCI	GTSAC	2 cut(s)	68, 436
NspV	TTCGAA	2 cut(s)	347, 766
PaeR7I	CTCGAG	1 cut(s)	825
PcsI	WCGNNNNNNNCGW	1 cut(s)	859
PdiI	GCCGGC	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	629
PflFI	GACNNNGTC	1 cut(s)	74
Ple19I	CGATCG	1 cut(s)	725
PleI	GAGTC	1 cut(s)	750
PluTI	GGCGCC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	750
Psp124BI	GAGCTC	1 cut(s)	826
PspEI	GGTNACC	1 cut(s)	639
PspFI	CCCAGC	1 cut(s)	467
PspN4I	GGNNCC	4 cut(s)	213, 430, 533, 749
PsuI	RGATCY	1 cut(s)	705
PsyI	GACNNNGTC	1 cut(s)	74
PvuI	CGATCG	1 cut(s)	725
SacI	GAGCTC	1 cut(s)	826
SacII	CCGCGG	1 cut(s)	538
Sau3AI	GATC	3 cut(s)	48, 705, 722
SchI	GAGTC	1 cut(s)	750
ScrFI	CCNGG	1 cut(s)	787
SduI	GDGCHC	2 cut(s)	741, 826
SfaNI	GCATC	1 cut(s)	194
SfoI	GGCGCC	1 cut(s)	213
Sfr274I	CTCGAG	1 cut(s)	825
Sfr303I	CCGCGG	1 cut(s)	538
SfuI	TTCGAA	2 cut(s)	347, 766
SgrBI	CCGCGG	1 cut(s)	538
SlaI	CTCGAG	1 cut(s)	825
SmlI	CTYRAG	2 cut(s)	618, 825
SmoI	CTYRAG	2 cut(s)	618, 825
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	5 cut(s)	30, 349, 451, 478, 839
SspDI	GGCGCC	1 cut(s)	211
SspMI	CTAG	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	826
StyD4I	CCNGG	1 cut(s)	785
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	3 cut(s)	436, 615, 743
TaqI	TCGA	7 cut(s)	83, 347, 721, 766, 826, 853, 862
TasI	AATT	5 cut(s)	30, 349, 451, 478, 839
TauI	GCSGC	8 cut(s)	212, 293, 318, 425, 510, 540, 731, 793
TfiI	GAWTC	1 cut(s)	629
TscAI	CASTG	2 cut(s)	307, 682
TseFI	GTSAC	2 cut(s)	68, 436
TseI	GCWGC	3 cut(s)	179, 182, 206
Tsp45I	GTSAC	2 cut(s)	68, 436
TspRI	CASTG	2 cut(s)	307, 682
Tth111I	GACNNNGTC	1 cut(s)	74
XapI	RAATTY	2 cut(s)	30, 349
XhoI	CTCGAG	1 cut(s)	825
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.