Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002520

Physical Location & Seq

Genomic Coordinates Reverse (-)

9336416 .. 9341943

Gene Structure 5528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g10930.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGGCTTCTGCAGGATCAGCATCCAGCCGTTCACTTCAAGAAACCCCCACCTGGGCTTTGGCAGCAGTTTGTTTTGTGTTCATTTTTCTCTCTCTATTTATAGAGCACTTGATTCATCTCATTAGCAAGTGGCTCAAAAAACACAGAAAAACCGCCTTGTTCGAGGCCGTAGAGAAGCTCAAATCAGTGCTTATACTCCTGGGATTTATGTCACTAATTTTGACAGTATCACAAAGATCGATATCCAAAATATGCATACCCACAAAAGTTGCATTCACCATGCTTCCCTGCAGAAAAAATGCACCAACAAAAACCACCAAAGCACTTGGTTTTGAGCAAATAACAATAGAAAGAATGCTTGCAGCAGCCGATACCAGTGAGGATCACTGTGAATCCCAGGGAAAGACCTCATTTATATCTCAAGGGGGGCTCAATCAGCTCAACAATTTCATCTTCGTTTTGGCAGTTATGCAGATTGTGTATAGTGTTCTCACCATGGCTTTAGGAAGGGCCAAGATGAGGCGTTGGGAAGCATGGGAAAAAGAAACTCAGACAGTGGAATACCAAGTGACAAATGATCCTAATCGGTTTAGGTTTACAAGGCAGACTACATTTGCTCTTCGACATATGAGTTCTTGTACAGGAAGAGGAACCACTGCTCAACTGTGGATTAGGTGCTTCTTCCGGCAGTTCTTTGATTCAGTGGACAAAGTTGACTACCTCACTTTGCGCCACGGTTTCATTTCAACTCATTTGTCCACAAACTACAATGCATTCGATTTCCAAAAGTATATACAACGATCACTGGACAATGATTTTAGAGCTGTGGTCGGAATCAGCCCTTTCCTGTGGTTTATTGTCGTCATCTTCATCCTCCTTGATGTCCATGGTTGGCAGGTGTATCTCTTGGTATCATTTGTGCCACTAATTATAGTTCTAGTTCTTGGAACCAAACTTGAAGTAGTAGTAGCAAACATGGCTCATCAACTTCATGACCAGCATCATGTGATTAAAGGAACTCCTCTGGTGCAACCAAAAGACAGTCACTTCTGGTTCAGTCAACCACAGTTCGTCTTGACTCTTTTACATCTCACTTTGTTTATGAATGCCTTTGAACTTGCTTTCTTTATATGGGTCACGATGCAATTTGGGATACACTCCTGCTACCACGAACACATACATATTATAATCGTACGAGTGGTTTTAGCGGTGACGGTTCAAGTGATGTGCAGTTACATTACTCTTCCCCTCTATGCTCTAGTGACCCAGATGGGATCAAATTTCAAGAGTGCAGCAGTGCTTGAAGAGCAAACAACAAATGTTATAAAGCAGTGGCACGCTGACGTGAAGAGAAAGAGGAAAAATAAATCACACTGTTCACAATCTGGTCACGACGAAAATTCGTCTAGAATCATGAATTCCCCTGATTTCTCTTCACATCGTCCCCAATTAACTTTCGCCGAAATGAACCAGAGTCATCCTAGAGAAACTGAGAATTTTCATGATAACCAAGAAATTGTTGAGGATCATCAAGAAAGGGCTGGCCAAAATGAAATTGAATTAGCCAGCAATGCGTCATCTACTGAGGTACATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

533

Amino Acids

61.0

Weight (kDa)

8.75

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45290
fragaria_vesca	FvH4_3g32830 FvH4_3g32830 FvH4_6g15590 FvH4_6g15590
malus_domestica	MD03G1115800.v1.1 MD04G1101400.v1.1 MD04G1101500.v1.1 MD11G1132500.v1.1 MD12G1121200.v1.1
prunus_persica	Prupe.6G097800_v2.0.a1 Prupe.6G097800_v2.0.a1 Prupe.6G097800_v2.0.a1 Prupe.6G239200_v2.0.a1
pyrus_communis	pycom04g09710 pycom11g10930 pycom12g12040
rosa_chinensis	RchiOBHm_Chr3g0469171 RchiOBHm_Chr5g0060001
rosa_laevigata	RLG00000024368 RLG00000035337
rosa_multiflora	Rmu_co8508661.1_g000001 Rmu_sc0000814.1_g000040 Rmu_sc0000890.1_g000027 Rmu_sc0012307.1_g000009 Rmu_sc0019192.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020670 Rroxscaffold_6G00412140
rosa_rugosa	Rorug03G0100100 Rorug05G0327100 Rorug05G0327200 Rorug05G0327300
rosa_samantha	Rh3AG149300 Rh3BG172600 Rh3CG163900 Rh3DG203100 Rh5AG391300 Rh5BG403800 Rh5CG427700
rosa_wichuraiana	Rw3G014090 Rw5G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1187, 1325
AarI	CACCTGC	1 cut(s)	886
Acc36I	ACCTGC	1 cut(s)	886
AciI	CCGC	2 cut(s)	153, 1208
AclWI	GGATC	5 cut(s)	22, 390, 572, 1282, 1533
AcoI	YGGCCR	1 cut(s)	1543
AcsI	RAATTY	4 cut(s)	1279, 1399, 1417, 1495
AfaI	GTAC	3 cut(s)	640, 1194, 1590
AfiI	CCNNNNNNNGG	3 cut(s)	51, 52, 519
AgsI	TTSAA	8 cut(s)	38, 747, 959, 1115, 1220, 1285, 1304, 1559
AjiI	CACGTC	1 cut(s)	1345
AjnI	CCWGG	3 cut(s)	50, 198, 396
AluBI	AGCT	3 cut(s)	178, 439, 824
AluI	AGCT	3 cut(s)	178, 439, 824
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	5 cut(s)	22, 390, 572, 1282, 1533
AoxI	GGCC	3 cut(s)	165, 510, 1543
ApeKI	GCWGC	4 cut(s)	62, 362, 365, 1292
ApoI	RAATTY	4 cut(s)	1279, 1399, 1417, 1495
AspLEI	GCGC	1 cut(s)	732
AspS9I	GGNCC	1 cut(s)	510
AsuHPI	GGTGA	3 cut(s)	268, 484, 1222
BalI	TGGCCA	1 cut(s)	1545
BanII	GRGCYC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	4 cut(s)	74, 374, 377, 1304
BccI	CCATC	1 cut(s)	1264
BceAI	ACGGC	2 cut(s)	12, 152
BciT130I	CCWGG	3 cut(s)	52, 200, 398
BciVI	GTATCC	1 cut(s)	1146
BfaI	CTAG	4 cut(s)	938, 1259, 1407, 1482
BfmI	CTRYAG	2 cut(s)	9, 289
BfuAI	ACCTGC	1 cut(s)	886
BfuI	GTATCC	1 cut(s)	1146
BisI	GCNGC	4 cut(s)	63, 363, 366, 1293
BlsI	GCNGC	4 cut(s)	64, 364, 367, 1294
Bme1390I	CCNGG	3 cut(s)	52, 200, 398
BmgBI	CACGTC	1 cut(s)	1345
BmgT120I	GGNCC	1 cut(s)	510
BmiI	GGNNCC	2 cut(s)	652, 949
BmrFI	CCNGG	3 cut(s)	52, 200, 398
BmsI	GCATC	3 cut(s)	29, 1009, 1131
BpuEI	CTTGAG	1 cut(s)	405
Bsa29I	ATCGAT	1 cut(s)	239
BsaBI	GATNNNNATC	3 cut(s)	19, 241, 582
BsaJI	CCNNGG	7 cut(s)	51, 199, 396, 397, 495, 733, 886
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 52, 519
Bse1I	ACTGG	2 cut(s)	375, 810
Bse3DI	GCAATG	1 cut(s)	1576
Bse8I	GATNNNNATC	3 cut(s)	19, 241, 582
BseBI	CCWGG	3 cut(s)	52, 200, 398
BseCI	ATCGAT	1 cut(s)	239
BseDI	CCNNGG	7 cut(s)	51, 199, 396, 397, 495, 733, 886
BseGI	GGATG	3 cut(s)	20, 870, 1477
BseJI	GATNNNNATC	3 cut(s)	19, 241, 582
BseLI	CCNNNNNNNGG	3 cut(s)	51, 52, 519
BseMI	GCAATG	1 cut(s)	1576
BseMII	CTCAG	3 cut(s)	563, 1482, 1575
BseNI	ACTGG	2 cut(s)	375, 810
BseRI	GAGGAG	1 cut(s)	1011
BseXI	GCAGC	4 cut(s)	74, 374, 377, 1304
BsgI	GTGCAG	2 cut(s)	1249, 1311
BshFI	GGCC	3 cut(s)	167, 512, 1545
BshVI	ATCGAT	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	685
BsiWI	CGTACG	1 cut(s)	1192
BslFI	GGGAC	1 cut(s)	1428
BslI	CCNNNNNNNGG	3 cut(s)	51, 52, 519
BsmFI	GGGAC	1 cut(s)	1428
BsmI	GAATGC	4 cut(s)	272, 360, 773, 1111
BsnI	GGCC	3 cut(s)	167, 512, 1545
Bsp1286I	GDGCHC	2 cut(s)	108, 432
Bsp1407I	TGTACA	1 cut(s)	638
Bsp143I	GATC	7 cut(s)	14, 236, 382, 577, 800, 1274, 1525
Bsp19I	CCATGG	2 cut(s)	495, 886
BspACI	CCGC	2 cut(s)	153, 1208
BspANI	GGCC	3 cut(s)	167, 512, 1545
BspCNI	CTCAG	3 cut(s)	562, 1483, 1576
BspDI	ATCGAT	1 cut(s)	239
BspHI	TCATGA	3 cut(s)	991, 1413, 1501
BspLI	GGNNCC	2 cut(s)	652, 949
BspMAI	CTGCAG	2 cut(s)	13, 293
BspMI	ACCTGC	1 cut(s)	886
BspPI	GGATC	5 cut(s)	22, 390, 572, 1282, 1533
BspQI	GCTCTTC	2 cut(s)	624, 1299
BsrDI	GCAATG	1 cut(s)	1576
BsrGI	TGTACA	1 cut(s)	638
BsrI	ACTGG	2 cut(s)	375, 810
BssECI	CCNNGG	7 cut(s)	51, 199, 396, 397, 495, 733, 886
BssMI	GATC	7 cut(s)	14, 236, 382, 577, 800, 1274, 1525
BssT1I	CCWWGG	2 cut(s)	495, 886
Bst2UI	CCWGG	3 cut(s)	52, 200, 398
Bst4CI	ACNGT	9 cut(s)	226, 389, 556, 666, 737, 1043, 1068, 1216, 1376
Bst6I	CTCTTC	6 cut(s)	624, 640, 1248, 1299, 1343, 1438
BstAUI	TGTACA	1 cut(s)	638
BstC8I	GCNNGC	4 cut(s)	360, 1338, 1543, 1567
BstDEI	CTNAG	3 cut(s)	549, 1491, 1584
BstDSI	CCRYGG	3 cut(s)	495, 733, 886
BstF5I	GGATG	3 cut(s)	20, 870, 1477
BstHHI	GCGC	1 cut(s)	732
BstKTI	GATC	7 cut(s)	17, 239, 385, 580, 803, 1277, 1528
BstMBI	GATC	7 cut(s)	14, 236, 382, 577, 800, 1274, 1525
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 62, 436, 977, 1306, 1571
BstNI	CCWGG	3 cut(s)	52, 200, 398
BstSCI	CCNGG	3 cut(s)	50, 198, 396
BstSFI	CTRYAG	2 cut(s)	9, 289
BstV1I	GCAGC	4 cut(s)	74, 374, 377, 1304
Bsu15I	ATCGAT	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	1146
BsuRI	GGCC	3 cut(s)	167, 512, 1545
BsuTUI	ATCGAT	1 cut(s)	239
BtgI	CCRYGG	3 cut(s)	495, 733, 886
BtrI	CACGTC	1 cut(s)	1345
BtsCI	GGATG	3 cut(s)	20, 870, 1477
BtsI	GCAGTG	3 cut(s)	654, 1302, 1337
BveI	ACCTGC	1 cut(s)	886
Cac8I	GCNNGC	4 cut(s)	360, 1338, 1543, 1567
CciI	TCATGA	3 cut(s)	991, 1413, 1501
CfoI	GCGC	1 cut(s)	732
Cfr13I	GGNCC	1 cut(s)	510
ClaI	ATCGAT	1 cut(s)	239
CseI	GACGC	1 cut(s)	1563
Csp6I	GTAC	3 cut(s)	639, 1193, 1589
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	9 cut(s)	280, 496, 534, 887, 976, 992, 1004, 1414, 1502
CviQI	GTAC	3 cut(s)	639, 1193, 1589
DdeI	CTNAG	3 cut(s)	549, 1491, 1584
DpnI	GATC	7 cut(s)	16, 238, 384, 579, 802, 1276, 1527
DpnII	GATC	7 cut(s)	14, 236, 382, 577, 800, 1274, 1525
EaeI	YGGCCR	1 cut(s)	1543
Eam1104I	CTCTTC	6 cut(s)	624, 640, 1248, 1299, 1343, 1438
EarI	CTCTTC	6 cut(s)	624, 640, 1248, 1299, 1343, 1438
Eco130I	CCWWGG	2 cut(s)	495, 886
Eco24I	GRGCYC	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	1417
EcoRII	CCWGG	3 cut(s)	50, 198, 396
EcoRV	GATATC	1 cut(s)	243
EcoT14I	CCWWGG	2 cut(s)	495, 886
EcoT22I	ATGCAT	2 cut(s)	257, 775
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	2 cut(s)	495, 886
FaeI	CATG	9 cut(s)	283, 499, 537, 890, 979, 995, 1007, 1417, 1505
FaqI	GGGAC	1 cut(s)	1428
FatI	CATG	9 cut(s)	279, 495, 533, 886, 975, 991, 1003, 1413, 1501
FauNDI	CATATG	1 cut(s)	627
Fnu4HI	GCNGC	4 cut(s)	63, 363, 366, 1293
FokI	GGATG	3 cut(s)	7, 857, 1464
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	4 cut(s)	63, 363, 366, 1293
FspBI	CTAG	4 cut(s)	938, 1259, 1407, 1482
GlaI	GCGC	1 cut(s)	731
GluI	GCNGC	4 cut(s)	63, 363, 366, 1293
HaeIII	GGCC	3 cut(s)	167, 512, 1545
HapII	CCGG	1 cut(s)	685
HgaI	GACGC	1 cut(s)	1563
HhaI	GCGC	1 cut(s)	732
Hin1II	CATG	9 cut(s)	283, 499, 537, 890, 979, 995, 1007, 1417, 1505
Hin6I	GCGC	1 cut(s)	730
HinP1I	GCGC	1 cut(s)	730
HincII	GTYRAC	2 cut(s)	715, 1061
HindII	GTYRAC	2 cut(s)	715, 1061
HinfI	GANTC	7 cut(s)	112, 392, 698, 834, 1078, 1410, 1474
HpaII	CCGG	1 cut(s)	685
HphI	GGTGA	3 cut(s)	268, 484, 1222
Hpy166II	GTNNAC	7 cut(s)	32, 597, 706, 715, 759, 1061, 1379
Hpy188I	TCNGA	2 cut(s)	552, 833
Hpy8I	GTNNAC	7 cut(s)	32, 597, 706, 715, 759, 1061, 1379
Hpy99I	CGWCG	1 cut(s)	1397
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	9 cut(s)	226, 389, 556, 666, 737, 1043, 1068, 1216, 1376
HpyCH4IV	ACGT	1 cut(s)	1344
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 62, 436, 977, 1306, 1571
HpyF3I	CTNAG	3 cut(s)	549, 1491, 1584
HpySE526I	ACGT	1 cut(s)	1344
Hsp92II	CATG	9 cut(s)	283, 499, 537, 890, 979, 995, 1007, 1417, 1505
HspAI	GCGC	1 cut(s)	730
Kzo9I	GATC	7 cut(s)	14, 236, 382, 577, 800, 1274, 1525
LguI	GCTCTTC	2 cut(s)	624, 1299
Lsp1109I	GCAGC	4 cut(s)	74, 374, 377, 1304
LweI	GCATC	3 cut(s)	29, 1009, 1131
MaeI	CTAG	4 cut(s)	938, 1259, 1407, 1482
MaeII	ACGT	1 cut(s)	1344
MaeIII	GTNAC	8 cut(s)	210, 568, 1043, 1135, 1210, 1232, 1261, 1388
MalI	GATC	7 cut(s)	16, 238, 384, 579, 802, 1276, 1527
MboI	GATC	7 cut(s)	14, 236, 382, 577, 800, 1274, 1525
MboII	GAAGA	9 cut(s)	445, 611, 657, 673, 859, 1235, 1316, 1360, 1425
MhlI	GDGCHC	2 cut(s)	108, 432
MlsI	TGGCCA	1 cut(s)	1545
MluNI	TGGCCA	1 cut(s)	1545
MlyI	GAGTC	2 cut(s)	1072, 1483
MmeI	TCCRAC	1 cut(s)	811
Mox20I	TGGCCA	1 cut(s)	1545
Mph1103I	ATGCAT	2 cut(s)	257, 775
MscI	TGGCCA	1 cut(s)	1545
MseI	TTAA	2 cut(s)	1011, 1451
Msp20I	TGGCCA	1 cut(s)	1545
MspI	CCGG	1 cut(s)	685
MspR9I	CCNGG	3 cut(s)	52, 200, 398
Mva1269I	GAATGC	4 cut(s)	272, 360, 773, 1111
MvaI	CCWGG	3 cut(s)	52, 200, 398
MwoI	GCNNNNNNNGC	6 cut(s)	17, 62, 436, 977, 1306, 1571
NcoI	CCATGG	2 cut(s)	495, 886
NdeI	CATATG	1 cut(s)	627
NdeII	GATC	7 cut(s)	14, 236, 382, 577, 800, 1274, 1525
NlaIII	CATG	9 cut(s)	283, 499, 537, 890, 979, 995, 1007, 1417, 1505
NlaIV	GGNNCC	2 cut(s)	652, 949
NmuCI	GTSAC	7 cut(s)	210, 568, 1043, 1135, 1210, 1261, 1388
NsiI	ATGCAT	2 cut(s)	257, 775
PagI	TCATGA	3 cut(s)	991, 1413, 1501
PaqCI	CACCTGC	1 cut(s)	886
PasI	CCCWGGG	1 cut(s)	397
PciSI	GCTCTTC	2 cut(s)	624, 1299
PctI	GAATGC	4 cut(s)	272, 360, 773, 1111
PfeI	GAWTC	5 cut(s)	112, 392, 698, 834, 1410
Pfl23II	CGTACG	1 cut(s)	1192
PkrI	GCNGC	4 cut(s)	64, 364, 367, 1294
PleI	GAGTC	2 cut(s)	1072, 1482
PpsI	GAGTC	2 cut(s)	1072, 1482
PsiI	TTATAA	2 cut(s)	1187, 1325
Psp6I	CCWGG	3 cut(s)	50, 198, 396
PspGI	CCWGG	3 cut(s)	50, 198, 396
PspLI	CGTACG	1 cut(s)	1192
PspN4I	GGNNCC	2 cut(s)	652, 949
PspPI	GGNCC	1 cut(s)	510
PstI	CTGCAG	2 cut(s)	13, 293
RsaI	GTAC	3 cut(s)	640, 1194, 1590
RsaNI	GTAC	3 cut(s)	639, 1193, 1589
SapI	GCTCTTC	2 cut(s)	624, 1299
SaqAI	TTAA	2 cut(s)	1011, 1451
SatI	GCNGC	4 cut(s)	63, 363, 366, 1293
Sau3AI	GATC	7 cut(s)	14, 236, 382, 577, 800, 1274, 1525
Sau96I	GGNCC	1 cut(s)	510
SchI	GAGTC	2 cut(s)	1072, 1483
ScrFI	CCNGG	3 cut(s)	52, 200, 398
SduI	GDGCHC	2 cut(s)	108, 432
SfaNI	GCATC	3 cut(s)	29, 1009, 1131
SfcI	CTRYAG	2 cut(s)	9, 289
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
SsiI	CCGC	2 cut(s)	153, 1208
SspMI	CTAG	4 cut(s)	938, 1259, 1407, 1482
StyD4I	CCNGG	3 cut(s)	50, 198, 396
StyI	CCWWGG	2 cut(s)	495, 886
TaaI	ACNGT	9 cut(s)	226, 389, 556, 666, 737, 1043, 1068, 1216, 1376
TaiI	ACGT	1 cut(s)	1347
TaqI	TCGA	4 cut(s)	162, 239, 622, 777
TatI	WGTACW	1 cut(s)	638
TfiI	GAWTC	5 cut(s)	112, 392, 698, 834, 1410
Tru1I	TTAA	2 cut(s)	1011, 1451
Tru9I	TTAA	2 cut(s)	1011, 1451
TseFI	GTSAC	7 cut(s)	210, 568, 1043, 1135, 1210, 1261, 1388
TseI	GCWGC	4 cut(s)	62, 362, 365, 1292
Tsp45I	GTSAC	7 cut(s)	210, 568, 1043, 1135, 1210, 1261, 1388
XapI	RAATTY	4 cut(s)	1279, 1399, 1417, 1495
XbaI	TCTAGA	1 cut(s)	1406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XspI	CTAG	4 cut(s)	938, 1259, 1407, 1482
Zsp2I	ATGCAT	2 cut(s)	257, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.