Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012307.1

Orthogroup ID

OG0002520

Physical Location & Seq

Genomic Coordinates Reverse (-)

38764 .. 42805

Gene Structure 4042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012307.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

atggcagtagccgttgaaggcaccactttggaacacacaccgacatgggctcttgccactgtttgcttcttcttcatctctgtctccatcttgattgaacacttaatccacctccttgtgacatggctcaaaaaccatcgaaaaaccgccttaactgatgcggtggagaagctcaaagcagagttaatgcttctgggatttgtgtcacttttattggcggtgacccaagataggatagcgaaaatttgtatacctgcaaagataggagatataatgcttccctgtcgtaaagccgtgaatgacacagaagtgaaaaccgttgagcactatgtgaacaaatttgcaagaaaccttaattcttctggggtacatgtcatgtttgaccaaatgctcaggcaaacgcagaggatactcgccgaggaggaggcagcagctgttgaagattattgcggtgatgaaaaggtttcgttggtgacgaaaaacgcccttcatcagctgcacttgctgatctttgcgcttgcggttatgcatattgtgtatagtgttctaactatggctttgggcagggctaagatgaggcgctgggaagcatgggaggaagaaacacgaacgatggagtaccaagttgccaatgaccccaatcgattcagacttacaagacaaacaacatttggaaaaaggcacatgaattcgtgcacagagacttcacttcatctatggctgaaatgctttttcaggcaattctataattccgtagcaaaagttgactacttcaccatgagacacggttttatatcggctcatctatcaagcaggcacaacaactttgattttcaaaaatacatacagcgatccttggaggaagatttcaagacattggttggcataagccctgcaatgtggtttgtagtagccatttttatgctggtggatgtgtatggttggcacgtatatctttggctatcctatgttccactcttggtcgttctggtcctaggaaccaaacttgaatacattgttgcaaagatggcgcttcaaattaaagaacagaacaatgtaatcattggaacacctcttgttcgagtagacgataatctattctggttcgggaaaccaagatttgtcttggtgcttttacattacactttgttcctgaatgcatttgagcttgccttcttcgtttgggttacagcccaatttggagtaggatcatgctaccacgagcacacctcgatcattgttacaagagttttcttagcggtgaccacccaagtcctctgcagctacattactcttcctctgtatgcacttgtaacacagatgggttcacaattcaagggtaagatactagaagataacatggctggcattctaaagcaatggcacagtgatgtgaggcggagaaggaagagggaagaacaagaatcacaatctgcacgcacgtctttttccatggaatggagctctgtgaggcacagcatttcttcttatatgagaccaagcacttccagacgaggtgaaaatgccgatttttctaacagatgggataacaaggaccagacagtagaattagaagaaagctcctcatcaaggggtcacagaagaaatagtgattatgggacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

541

Amino Acids

62.59

Weight (kDa)

8.93

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45290
fragaria_vesca	FvH4_3g32830 FvH4_3g32830 FvH4_6g15590 FvH4_6g15590
malus_domestica	MD03G1115800.v1.1 MD04G1101400.v1.1 MD04G1101500.v1.1 MD11G1132500.v1.1 MD12G1121200.v1.1
prunus_persica	Prupe.6G097800_v2.0.a1 Prupe.6G097800_v2.0.a1 Prupe.6G097800_v2.0.a1 Prupe.6G239200_v2.0.a1
pyrus_communis	pycom04g09710 pycom11g10930 pycom12g12040
rosa_chinensis	RchiOBHm_Chr3g0469171 RchiOBHm_Chr5g0060001
rosa_laevigata	RLG00000024368 RLG00000035337
rosa_multiflora	Rmu_co8508661.1_g000001 Rmu_sc0000814.1_g000040 Rmu_sc0000890.1_g000027 Rmu_sc0012307.1_g000009 Rmu_sc0019192.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020670 Rroxscaffold_6G00412140
rosa_rugosa	Rorug03G0100100 Rorug05G0327100 Rorug05G0327200 Rorug05G0327300
rosa_samantha	Rh3AG149300 Rh3BG172600 Rh3CG163900 Rh3DG203100 Rh5AG391300 Rh5BG403800 Rh5CG427700
rosa_wichuraiana	Rw3G014090 Rw5G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AccB1I	GGYRCC	1 cut(s)	20
AccB7I	CCANNNNNTGG	1 cut(s)	1458
AccI	GTMKAC	2 cut(s)	250, 1086
AciI	CCGC	7 cut(s)	147, 161, 218, 450, 521, 1259, 1399
AclWI	GGATC	2 cut(s)	846, 1216
AcsI	RAATTY	3 cut(s)	243, 338, 688
AdeI	CACNNNGTG	1 cut(s)	331
AfaI	GTAC	2 cut(s)	369, 620
AfiI	CCNNNNNNNGG	3 cut(s)	231, 1458, 1590
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	8 cut(s)	17, 98, 440, 836, 871, 1010, 1037, 1336
AjiI	CACGTC	1 cut(s)	1443
AleI	CACNNNNGTG	1 cut(s)	308
AloI	GAACNNNNNNTCC	2 cut(s)	90, 122
AluBI	AGCT	7 cut(s)	172, 434, 496, 1168, 1284, 1464, 1581
AluI	AGCT	7 cut(s)	172, 434, 496, 1168, 1284, 1464, 1581
Alw21I	GWGCWC	4 cut(s)	327, 698, 1227, 1466
Alw26I	GTCTC	4 cut(s)	88, 695, 775, 1489
Alw44I	GTGCAC	1 cut(s)	694
AlwI	GGATC	2 cut(s)	846, 1216
AlwNI	CAGNNNCTG	1 cut(s)	434
ApaLI	GTGCAC	1 cut(s)	694
ApeKI	GCWGC	4 cut(s)	428, 431, 496, 1281
ApoI	RAATTY	3 cut(s)	243, 338, 688
AspA2I	CCTAGG	1 cut(s)	994
AspLEI	GCGC	3 cut(s)	517, 582, 1033
AspS9I	GGNCC	2 cut(s)	991, 1555
AsuHPI	GGTGA	6 cut(s)	232, 464, 484, 766, 1273, 1529
AvaII	GGWCC	2 cut(s)	991, 1555
AvrII	CCTAGG	1 cut(s)	994
BaeGI	GKGCMC	1 cut(s)	698
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	2 cut(s)	52, 1466
BauI	CACGAG	1 cut(s)	1220
Bbv12I	GWGCWC	4 cut(s)	327, 698, 1227, 1466
BbvI	GCAGC	4 cut(s)	440, 443, 483, 1293
BccI	CCATC	6 cut(s)	95, 144, 607, 1021, 1315, 1536
BceAI	ACGGC	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	402
BcoDI	GTCTC	4 cut(s)	88, 695, 775, 1489
BfaI	CTAG	2 cut(s)	995, 1349
BfmI	CTRYAG	1 cut(s)	1279
BfoI	RGCGCY	2 cut(s)	583, 1034
BfuAI	ACCTGC	1 cut(s)	262
BfuI	GTATCC	1 cut(s)	402
BisI	GCNGC	4 cut(s)	429, 432, 497, 1282
BlnI	CCTAGG	1 cut(s)	994
BlsI	GCNGC	4 cut(s)	430, 433, 498, 1283
Bme18I	GGWCC	2 cut(s)	991, 1555
BmgBI	CACGTC	1 cut(s)	1443
BmgT120I	GGNCC	2 cut(s)	991, 1555
BmiI	GGNNCC	2 cut(s)	22, 1000
BmsI	GCATC	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	1214, 1246
Bpu10I	CCTNAGC	1 cut(s)	392
Bsa29I	ATCGAT	1 cut(s)	643
BsaAI	YACGTR	1 cut(s)	949
BsaI	GGTCTC	1 cut(s)	1489
BsaJI	CCNNGG	4 cut(s)	417, 855, 994, 1452
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 1458, 1590
Bse3DI	GCAATG	2 cut(s)	903, 1385
BseCI	ATCGAT	1 cut(s)	643
BseDI	CCNNGG	4 cut(s)	417, 855, 994, 1452
BseGI	GGATG	1 cut(s)	937
BseLI	CCNNNNNNNGG	3 cut(s)	231, 1458, 1590
BseMI	GCAATG	2 cut(s)	903, 1385
BseMII	CTCAG	1 cut(s)	406
BseRI	GAGGAG	3 cut(s)	434, 437, 1573
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	4 cut(s)	440, 443, 483, 1293
BseYI	CCCAGC	1 cut(s)	582
BsgI	GTGCAG	2 cut(s)	482, 1419
BshNI	GGYRCC	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	643
BsiHKAI	GWGCWC	4 cut(s)	327, 698, 1227, 1466
BslI	CCNNNNNNNGG	3 cut(s)	231, 1458, 1590
BsmAI	GTCTC	4 cut(s)	88, 695, 775, 1489
BsmI	GAATGC	2 cut(s)	1162, 1368
Bso31I	GGTCTC	1 cut(s)	1489
Bsp1286I	GDGCHC	5 cut(s)	52, 327, 698, 1227, 1466
Bsp143I	GATC	4 cut(s)	507, 851, 1208, 1233
Bsp19I	CCATGG	1 cut(s)	1452
BspACI	CCGC	7 cut(s)	147, 161, 218, 450, 521, 1259, 1399
BspCNI	CTCAG	1 cut(s)	405
BspDI	ATCGAT	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	22, 1000
BspMAI	CTGCAG	1 cut(s)	1283
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	846, 1216
BspT107I	GGYRCC	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	1489
BsrDI	GCAATG	2 cut(s)	903, 1385
BssECI	CCNNGG	4 cut(s)	417, 855, 994, 1452
BssMI	GATC	4 cut(s)	507, 851, 1208, 1233
BssNAI	GTATAC	1 cut(s)	251
BssSI	CACGAG	1 cut(s)	1220
BssT1I	CCWWGG	3 cut(s)	855, 994, 1452
Bst1107I	GTATAC	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	1220
Bst4CI	ACNGT	5 cut(s)	61, 319, 788, 1388, 1564
Bst6I	CTCTTC	2 cut(s)	1299, 1403
BstBAI	YACGTR	1 cut(s)	949
BstC8I	GCNNGC	5 cut(s)	519, 815, 1170, 1366, 1438
BstDEI	CTNAG	3 cut(s)	392, 570, 1255
BstDSI	CCRYGG	1 cut(s)	1452
BstEII	GGTNACC	2 cut(s)	220, 1261
BstENI	CCTNNNNNAGG	1 cut(s)	1588
BstF5I	GGATG	1 cut(s)	937
BstH2I	RGCGCY	2 cut(s)	583, 1034
BstHHI	GCGC	3 cut(s)	517, 582, 1033
BstKTI	GATC	4 cut(s)	510, 854, 1211, 1236
BstMAI	GTCTC	4 cut(s)	88, 695, 775, 1489
BstMBI	GATC	4 cut(s)	507, 851, 1208, 1233
BstMWI	GCNNNNNNNGC	2 cut(s)	502, 1028
BstNSI	RCATGY	1 cut(s)	374
BstPI	GGTNACC	2 cut(s)	220, 1261
BstSFI	CTRYAG	1 cut(s)	1279
BstSLI	GKGCMC	1 cut(s)	698
BstV1I	GCAGC	4 cut(s)	440, 443, 483, 1293
BstZ17I	GTATAC	1 cut(s)	251
Bsu15I	ATCGAT	1 cut(s)	643
BsuI	GTATCC	1 cut(s)	402
BsuTUI	ATCGAT	1 cut(s)	643
BtgI	CCRYGG	1 cut(s)	1452
BtrI	CACGTC	1 cut(s)	1443
BtsCI	GGATG	1 cut(s)	937
BtsIMutI	CAGTG	2 cut(s)	57, 1393
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	5 cut(s)	519, 815, 1170, 1366, 1438
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	3 cut(s)	517, 582, 1033
Cfr13I	GGNCC	2 cut(s)	991, 1555
ClaI	ATCGAT	1 cut(s)	643
Csp6I	GTAC	2 cut(s)	368, 619
CviQI	GTAC	2 cut(s)	368, 619
DdeI	CTNAG	3 cut(s)	392, 570, 1255
DpnI	GATC	4 cut(s)	509, 853, 1210, 1235
DpnII	GATC	4 cut(s)	507, 851, 1208, 1233
DraIII	CACNNNGTG	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	1299, 1403
EarI	CTCTTC	2 cut(s)	1299, 1403
EciI	GGCGGA	1 cut(s)	1414
Ecl136II	GAGCTC	1 cut(s)	1464
Eco130I	CCWWGG	3 cut(s)	855, 994, 1452
Eco24I	GRGCYC	2 cut(s)	52, 1466
Eco31I	GGTCTC	1 cut(s)	1489
Eco47I	GGWCC	2 cut(s)	991, 1555
Eco53kI	GAGCTC	1 cut(s)	1464
Eco91I	GGTNACC	2 cut(s)	220, 1261
EcoICRI	GAGCTC	1 cut(s)	1464
EcoNI	CCTNNNNNAGG	1 cut(s)	1588
EcoO65I	GGTNACC	2 cut(s)	220, 1261
EcoRI	GAATTC	1 cut(s)	688
EcoT14I	CCWWGG	3 cut(s)	855, 994, 1452
EcoT22I	ATGCAT	2 cut(s)	531, 1162
EcoT38I	GRGCYC	2 cut(s)	52, 1466
ErhI	CCWWGG	3 cut(s)	855, 994, 1452
FblI	GTMKAC	2 cut(s)	250, 1086
Fnu4HI	GCNGC	4 cut(s)	429, 432, 497, 1282
FokI	GGATG	1 cut(s)	944
FriOI	GRGCYC	2 cut(s)	52, 1466
Fsp4HI	GCNGC	4 cut(s)	429, 432, 497, 1282
FspBI	CTAG	2 cut(s)	995, 1349
GlaI	GCGC	3 cut(s)	516, 581, 1032
GluI	GCNGC	4 cut(s)	429, 432, 497, 1282
GsaI	CCCAGC	1 cut(s)	586
HaeII	RGCGCY	2 cut(s)	583, 1034
HhaI	GCGC	3 cut(s)	517, 582, 1033
Hin6I	GCGC	3 cut(s)	515, 580, 1031
HinP1I	GCGC	3 cut(s)	515, 580, 1031
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HinfI	GANTC	2 cut(s)	645, 1424
HphI	GGTGA	6 cut(s)	232, 464, 484, 766, 1273, 1529
Hpy166II	GTNNAC	6 cut(s)	251, 334, 696, 766, 1087, 1328
Hpy188I	TCNGA	1 cut(s)	650
Hpy188III	TCNNGA	5 cut(s)	91, 871, 1108, 1153, 1509
Hpy8I	GTNNAC	6 cut(s)	251, 334, 696, 766, 1087, 1328
HpyAV	CCTTC	4 cut(s)	11, 497, 1183, 1398
HpyCH4III	ACNGT	5 cut(s)	61, 319, 788, 1388, 1564
HpyCH4IV	ACGT	2 cut(s)	948, 1442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	502, 1028
HpyF3I	CTNAG	3 cut(s)	392, 570, 1255
HpySE526I	ACGT	2 cut(s)	948, 1442
HspAI	GCGC	3 cut(s)	515, 580, 1031
Kzo9I	GATC	4 cut(s)	507, 851, 1208, 1233
LmnI	GCTCC	2 cut(s)	1461, 1586
Lsp1109I	GCAGC	4 cut(s)	440, 443, 483, 1293
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	995, 1349
MaeII	ACGT	2 cut(s)	948, 1442
MaeIII	GTNAC	9 cut(s)	118, 204, 220, 472, 1186, 1240, 1261, 1312, 1595
MalI	GATC	4 cut(s)	509, 853, 1210, 1235
MboI	GATC	4 cut(s)	507, 851, 1208, 1233
MhlI	GDGCHC	5 cut(s)	52, 327, 698, 1227, 1466
Mph1103I	ATGCAT	2 cut(s)	531, 1162
MseI	TTAA	5 cut(s)	104, 152, 185, 354, 1041
MslI	CAYNNNNRTG	4 cut(s)	43, 308, 920, 1389
MspA1I	CMGCKG	2 cut(s)	434, 496
Mva1269I	GAATGC	2 cut(s)	1162, 1368
MwoI	GCNNNNNNNGC	2 cut(s)	502, 1028
NcoI	CCATGG	1 cut(s)	1452
NdeII	GATC	4 cut(s)	507, 851, 1208, 1233
NlaIV	GGNNCC	2 cut(s)	22, 1000
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	6 cut(s)	118, 204, 220, 472, 1261, 1595
NsiI	ATGCAT	2 cut(s)	531, 1162
NspI	RCATGY	1 cut(s)	374
OliI	CACNNNNGTG	1 cut(s)	308
PciI	ACATGT	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	473
PctI	GAATGC	2 cut(s)	1162, 1368
PfeI	GAWTC	2 cut(s)	645, 1424
PflMI	CCANNNNNTGG	1 cut(s)	1458
PkrI	GCNGC	4 cut(s)	430, 433, 498, 1283
Ppu21I	YACGTR	1 cut(s)	949
PscI	ACATGT	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	1466
PspEI	GGTNACC	2 cut(s)	220, 1261
PspFI	CCCAGC	1 cut(s)	582
PspN4I	GGNNCC	2 cut(s)	22, 1000
PspPI	GGNCC	2 cut(s)	991, 1555
PstI	CTGCAG	1 cut(s)	1283
PstNI	CAGNNNCTG	1 cut(s)	434
PvuII	CAGCTG	2 cut(s)	434, 496
RsaI	GTAC	2 cut(s)	369, 620
RsaNI	GTAC	2 cut(s)	368, 619
RseI	CAYNNNNRTG	4 cut(s)	43, 308, 920, 1389
SacI	GAGCTC	1 cut(s)	1466
SaqAI	TTAA	5 cut(s)	104, 152, 185, 354, 1041
SatI	GCNGC	4 cut(s)	429, 432, 497, 1282
Sau3AI	GATC	4 cut(s)	507, 851, 1208, 1233
Sau96I	GGNCC	2 cut(s)	991, 1555
SduI	GDGCHC	5 cut(s)	52, 327, 698, 1227, 1466
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	1279
SinI	GGWCC	2 cut(s)	991, 1555
SmiMI	CAYNNNNRTG	4 cut(s)	43, 308, 920, 1389
SsiI	CCGC	7 cut(s)	147, 161, 218, 450, 521, 1259, 1399
SspMI	CTAG	2 cut(s)	995, 1349
SstI	GAGCTC	1 cut(s)	1466
StyI	CCWWGG	3 cut(s)	855, 994, 1452
TaaI	ACNGT	5 cut(s)	61, 319, 788, 1388, 1564
TaiI	ACGT	2 cut(s)	951, 1445
TaqI	TCGA	4 cut(s)	139, 643, 1081, 1232
TfiI	GAWTC	2 cut(s)	645, 1424
Tru1I	TTAA	5 cut(s)	104, 152, 185, 354, 1041
Tru9I	TTAA	5 cut(s)	104, 152, 185, 354, 1041
TscAI	CASTG	2 cut(s)	64, 1393
TseFI	GTSAC	6 cut(s)	118, 204, 220, 472, 1261, 1595
TseI	GCWGC	4 cut(s)	428, 431, 496, 1281
Tsp45I	GTSAC	6 cut(s)	118, 204, 220, 472, 1261, 1595
TspDTI	ATGAA	5 cut(s)	64, 471, 479, 701, 701
TspGWI	ACGGA	1 cut(s)	742
TspRI	CASTG	2 cut(s)	64, 1393
Van91I	CCANNNNNTGG	1 cut(s)	1458
VneI	GTGCAC	1 cut(s)	694
VpaK11BI	GGWCC	2 cut(s)	991, 1555
XagI	CCTNNNNNAGG	1 cut(s)	1588
XapI	RAATTY	3 cut(s)	243, 338, 688
XceI	RCATGY	1 cut(s)	374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	922
XmaJI	CCTAGG	1 cut(s)	994
XmiI	GTMKAC	2 cut(s)	250, 1086
XspI	CTAG	2 cut(s)	995, 1349
Zsp2I	ATGCAT	2 cut(s)	531, 1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.