Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019192.1

Orthogroup ID

OG0002520

Physical Location & Seq

Genomic Coordinates Forward (+)

12880 .. 16347

Gene Structure 3468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019192.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

atgtggtttatcgtcgtaatcttcattctcgtagacgtgcatggttggcaggtgtatctctgggtgtcatttgtgccactaatcattgtgctagttcttggaaccaaactggaagtggtggtagccagaatggctcaccaactcggtgaccagcataatgtaatcaaaggaactcctctggttcaaccaaaggacagtcacttctggttcaatagaccgcggttcgtcttgactctcgtacatctcacactgttcatgaatgcatttgaacttgctttcttcatttgggtcacgttacaatttgggatacactcttgctaccatgaacacatagagattatcattataagggtggtcttagcggttgtcgttcaagttatgtgcagttacattactcttcccctctatgctctagtgacccagatggggtcaaatttgaagagtacagcagtgcttgaagagcaaacaacaaaagttataaagcagtggcatgcggacgtgaagcaaaagaggaaaaagaataggcaagacaattcagaatctggtcacgattattcctctactgtaggaagcagtcagagaaccatgaattccccagatttctcttcccaccaccggcacccaacctttgctgaaatgtcccaaatggagattgtcgaagatggtcaagaaattgttgaagaacatcaagaaaagggcagccaaaatgaaattgaactggctagtagtagtactgttttagctactgagtttctctacaacaaaaccaccgccgcccaccttgaagatctcaactccaggagtccagaaccggcagccccgcccccagaaccggccggaaaatatccgaaccggccaccggaaatatctttaccctccctgcccggtttgaagctttcctccctgccaactgctaccaaacttcaccggaacctgcaaccagaccccagatcaccggagccgaaaaatatccaccggaaccggcctagaacccccaagcccgccagcagcccagcgaagcccacttgcaaacccaagccgcataggcccgccagcaggcccagcgaagcccacgtgcaaaccaagccgcaagccgccgagccgcaagccgcaagccgccaagaaacctgccacgtcagcaagccacgcaggcatccagtcagcagccacgtcagcgatgctgtgccacgtcagcgtcggactgccacgtcagcactcgatcaacgaccggtcaacacttttccggcgacttttccggccgacctccggccaatttccggccacttttcctgtcagctacagtacttccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

437

Amino Acids

49.31

Weight (kDa)

9.35

Isoelectric Point (pI)

61.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45290
fragaria_vesca	FvH4_3g32830 FvH4_3g32830 FvH4_6g15590 FvH4_6g15590
malus_domestica	MD03G1115800.v1.1 MD04G1101400.v1.1 MD04G1101500.v1.1 MD11G1132500.v1.1 MD12G1121200.v1.1
prunus_persica	Prupe.6G097800_v2.0.a1 Prupe.6G097800_v2.0.a1 Prupe.6G097800_v2.0.a1 Prupe.6G239200_v2.0.a1
pyrus_communis	pycom04g09710 pycom11g10930 pycom12g12040
rosa_chinensis	RchiOBHm_Chr3g0469171 RchiOBHm_Chr5g0060001
rosa_laevigata	RLG00000024368 RLG00000035337
rosa_multiflora	Rmu_co8508661.1_g000001 Rmu_sc0000814.1_g000040 Rmu_sc0000890.1_g000027 Rmu_sc0012307.1_g000009 Rmu_sc0019192.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020670 Rroxscaffold_6G00412140
rosa_rugosa	Rorug03G0100100 Rorug05G0327100 Rorug05G0327200 Rorug05G0327300
rosa_samantha	Rh3AG149300 Rh3BG172600 Rh3CG163900 Rh3DG203100 Rh5AG391300 Rh5BG403800 Rh5CG427700
rosa_wichuraiana	Rw3G014090 Rw5G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	347, 479
AarI	CACCTGC	1 cut(s)	40
AasI	GACNNNNNNGTC	1 cut(s)	1207
Acc36I	ACCTGC	3 cut(s)	40, 942, 1136
AccB1I	GGYRCC	1 cut(s)	618
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	220
AcoI	YGGCCR	5 cut(s)	834, 854, 1257, 1268, 1279
AcsI	RAATTY	2 cut(s)	433, 589
AcvI	CACGTG	1 cut(s)	1075
AfaI	GTAC	4 cut(s)	240, 445, 733, 1304
AfiI	CCNNNNNNNGG	7 cut(s)	426, 615, 832, 859, 1056, 1266, 1277
AgeI	ACCGGT	1 cut(s)	1228
AjiI	CACGTC	6 cut(s)	37, 499, 1135, 1171, 1190, 1209
AjnI	CCWGG	1 cut(s)	797
AluBI	AGCT	3 cut(s)	743, 895, 1297
AluI	AGCT	3 cut(s)	743, 895, 1297
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	8 cut(s)	834, 854, 983, 1046, 1058, 1257, 1268, 1279
ApeKI	GCWGC	4 cut(s)	699, 815, 1008, 1164
ApoI	RAATTY	2 cut(s)	433, 589
AsiGI	ACCGGT	1 cut(s)	1228
AspS9I	GGNCC	2 cut(s)	1047, 1059
AsuC2I	CCSGG	1 cut(s)	885
AsuHPI	GGTGA	4 cut(s)	128, 158, 917, 945
BanI	GGYRCC	1 cut(s)	618
BbrPI	CACGTG	1 cut(s)	1075
BbvI	GCAGC	4 cut(s)	711, 827, 1020, 1176
BccI	CCATC	2 cut(s)	418, 656
BciT130I	CCWGG	1 cut(s)	799
BciVI	GTATCC	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	885
BfaI	CTAG	4 cut(s)	92, 413, 723, 987
BfmI	CTRYAG	2 cut(s)	564, 1298
BfuAI	ACCTGC	3 cut(s)	40, 942, 1136
BfuI	GTATCC	1 cut(s)	300
BglI	GCCNNNNNGGC	3 cut(s)	131, 1045, 1150
BglII	AGATCT	1 cut(s)	787
BmcAI	AGTACT	2 cut(s)	733, 1304
Bme1390I	CCNGG	2 cut(s)	799, 885
BmgBI	CACGTC	6 cut(s)	37, 499, 1135, 1171, 1190, 1209
BmgT120I	GGNCC	2 cut(s)	1047, 1059
BmiI	GGNNCC	5 cut(s)	103, 620, 932, 960, 980
BmrFI	CCNGG	2 cut(s)	799, 885
BmsI	GCATC	2 cut(s)	1162, 1168
BpmI	CTGGAG	1 cut(s)	781
BpuMI	CCSGG	1 cut(s)	885
BsaAI	YACGTR	1 cut(s)	1075
BsaJI	CCNNGG	1 cut(s)	218
BsaWI	WCCGGW	6 cut(s)	859, 927, 955, 975, 1228, 1308
Bsc4I	CCNNNNNNNGG	7 cut(s)	426, 615, 832, 859, 1056, 1266, 1277
Bse118I	RCCGGY	6 cut(s)	615, 811, 832, 852, 981, 1228
Bse1I	ACTGG	3 cut(s)	114, 723, 1157
BseBI	CCWGG	1 cut(s)	799
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	1153
BseLI	CCNNNNNNNGG	7 cut(s)	426, 615, 832, 859, 1056, 1266, 1277
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	3 cut(s)	114, 723, 1157
BseRI	GAGGAG	1 cut(s)	165
BseX3I	CGGCCG	2 cut(s)	834, 1257
BseXI	GCAGC	4 cut(s)	711, 827, 1020, 1176
BseYI	CCCAGC	2 cut(s)	1012, 1061
BsgI	GTGCAG	1 cut(s)	403
Bsh1236I	CGCG	1 cut(s)	220
Bsh1285I	CGRYCG	3 cut(s)	837, 1229, 1260
BshFI	GGCC	8 cut(s)	836, 856, 985, 1048, 1060, 1259, 1270, 1281
BshNI	GGYRCC	1 cut(s)	618
BshTI	ACCGGT	1 cut(s)	1228
BsiEI	CGRYCG	3 cut(s)	837, 1229, 1260
BslFI	GGGAC	1 cut(s)	625
BslI	CCNNNNNNNGG	7 cut(s)	426, 615, 832, 859, 1056, 1266, 1277
BsmFI	GGGAC	1 cut(s)	625
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	8 cut(s)	836, 856, 985, 1048, 1060, 1259, 1270, 1281
Bsp143I	GATC	3 cut(s)	787, 950, 1219
BspANI	GGCC	8 cut(s)	836, 856, 985, 1048, 1060, 1259, 1270, 1281
BspCNI	CTCAG	1 cut(s)	739
BspFNI	CGCG	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	5 cut(s)	103, 620, 932, 960, 980
BspMI	ACCTGC	3 cut(s)	40, 942, 1136
BspQI	GCTCTTC	1 cut(s)	453
BspT107I	GGYRCC	1 cut(s)	618
BsrFI	RCCGGY	6 cut(s)	615, 811, 832, 852, 981, 1228
BsrI	ACTGG	3 cut(s)	114, 723, 1157
BssAI	RCCGGY	6 cut(s)	615, 811, 832, 852, 981, 1228
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	3 cut(s)	787, 950, 1219
Bst2UI	CCWGG	1 cut(s)	799
Bst4CI	ACNGT	5 cut(s)	197, 252, 565, 736, 1302
Bst6I	CTCTTC	4 cut(s)	402, 434, 453, 610
BstBAI	YACGTR	1 cut(s)	1075
BstDEI	CTNAG	2 cut(s)	358, 747
BstDSI	CCRYGG	1 cut(s)	218
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	1153
BstFNI	CGCG	1 cut(s)	220
BstKTI	GATC	3 cut(s)	790, 953, 1222
BstMBI	GATC	3 cut(s)	787, 950, 1219
BstMCI	CGRYCG	3 cut(s)	837, 1229, 1260
BstNI	CCWGG	1 cut(s)	799
BstNSI	RCATGY	1 cut(s)	494
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	797, 883
BstSFI	CTRYAG	2 cut(s)	564, 1298
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	4 cut(s)	711, 827, 1020, 1176
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BstZI	CGGCCG	2 cut(s)	834, 1257
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	8 cut(s)	836, 856, 985, 1048, 1060, 1259, 1270, 1281
BtgI	CCRYGG	1 cut(s)	218
BtgZI	GCGATG	1 cut(s)	1191
BtrI	CACGTC	6 cut(s)	37, 499, 1135, 1171, 1190, 1209
BtsCI	GGATG	1 cut(s)	1153
BtsI	GCAGTG	2 cut(s)	456, 491
BtsIMutI	CAGTG	3 cut(s)	248, 456, 491
BveI	ACCTGC	3 cut(s)	40, 942, 1136
CaiI	CAGNNNCTG	1 cut(s)	542
CciI	TCATGA	1 cut(s)	255
Cfr10I	RCCGGY	6 cut(s)	615, 811, 832, 852, 981, 1228
Cfr13I	GGNCC	2 cut(s)	1047, 1059
Cfr42I	CCGCGG	1 cut(s)	221
CseI	GACGC	1 cut(s)	1184
Csp6I	GTAC	4 cut(s)	239, 444, 732, 1303
CspAI	ACCGGT	1 cut(s)	1228
CviAII	CATG	5 cut(s)	41, 256, 323, 491, 586
CviQI	GTAC	4 cut(s)	239, 444, 732, 1303
DdeI	CTNAG	2 cut(s)	358, 747
DpnI	GATC	3 cut(s)	789, 952, 1221
DpnII	GATC	3 cut(s)	787, 950, 1219
DrdI	GACNNNNNNGTC	1 cut(s)	1207
DseDI	GACNNNNNNGTC	1 cut(s)	1207
EaeI	YGGCCR	5 cut(s)	834, 854, 1257, 1268, 1279
EagI	CGGCCG	2 cut(s)	834, 1257
Eam1104I	CTCTTC	4 cut(s)	402, 434, 453, 610
EarI	CTCTTC	4 cut(s)	402, 434, 453, 610
EclXI	CGGCCG	2 cut(s)	834, 1257
Eco52I	CGGCCG	2 cut(s)	834, 1257
Eco72I	CACGTG	1 cut(s)	1075
Eco91I	GGTNACC	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	797
EcoT22I	ATGCAT	1 cut(s)	265
FaeI	CATG	5 cut(s)	44, 259, 326, 494, 589
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	5 cut(s)	40, 255, 322, 490, 585
FauI	CCCGC	3 cut(s)	828, 1009, 1057
FblI	GTMKAC	1 cut(s)	33
FokI	GGATG	1 cut(s)	1140
FspBI	CTAG	4 cut(s)	92, 413, 723, 987
GsaI	CCCAGC	2 cut(s)	1016, 1065
GsuI	CTGGAG	1 cut(s)	781
HaeIII	GGCC	8 cut(s)	836, 856, 985, 1048, 1060, 1259, 1270, 1281
HgaI	GACGC	1 cut(s)	1184
Hin1II	CATG	5 cut(s)	44, 259, 326, 494, 589
HincII	GTYRAC	1 cut(s)	1234
HindII	GTYRAC	1 cut(s)	1234
HindIII	AAGCTT	1 cut(s)	893
HinfI	GANTC	3 cut(s)	232, 539, 802
HphI	GGTGA	4 cut(s)	128, 158, 917, 945
Hpy166II	GTNNAC	2 cut(s)	34, 1234
Hpy188I	TCNGA	4 cut(s)	538, 579, 849, 1200
Hpy188III	TCNNGA	6 cut(s)	229, 256, 548, 668, 689, 806
Hpy8I	GTNNAC	2 cut(s)	34, 1234
Hpy99I	CGWCG	2 cut(s)	17, 1200
HpyCH4III	ACNGT	5 cut(s)	197, 252, 565, 736, 1302
HpyCH4IV	ACGT	8 cut(s)	36, 293, 498, 1074, 1134, 1170, 1189, 1208
HpyCH4V	TGCA	6 cut(s)	40, 263, 384, 937, 1029, 1078
HpyF3I	CTNAG	2 cut(s)	358, 747
HpySE526I	ACGT	8 cut(s)	36, 293, 498, 1074, 1134, 1170, 1189, 1208
Hsp92II	CATG	5 cut(s)	44, 259, 326, 494, 589
KspI	CCGCGG	1 cut(s)	221
Kzo9I	GATC	3 cut(s)	787, 950, 1219
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	1 cut(s)	958
Lsp1109I	GCAGC	4 cut(s)	711, 827, 1020, 1176
LweI	GCATC	2 cut(s)	1162, 1168
MaeI	CTAG	4 cut(s)	92, 413, 723, 987
MaeII	ACGT	8 cut(s)	36, 293, 498, 1074, 1134, 1170, 1189, 1208
MaeIII	GTNAC	7 cut(s)	146, 197, 289, 294, 386, 415, 545
MalI	GATC	3 cut(s)	789, 952, 1221
MboI	GATC	3 cut(s)	787, 950, 1219
MboII	GAAGA	9 cut(s)	13, 271, 389, 451, 470, 597, 671, 692, 797
MflI	RGATCY	1 cut(s)	787
MluCI	AATT	7 cut(s)	299, 433, 532, 589, 672, 711, 1272
MlyI	GAGTC	2 cut(s)	226, 811
MmeI	TCCRAC	1 cut(s)	1178
MnlI	CCTC	7 cut(s)	186, 413, 504, 568, 886, 910, 1274
Mph1103I	ATGCAT	1 cut(s)	265
MspA1I	CMGCKG	1 cut(s)	220
MspR9I	CCNGG	2 cut(s)	799, 885
Mva1269I	GAATGC	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	799
MvnI	CGCG	1 cut(s)	220
NciI	CCSGG	1 cut(s)	885
NdeII	GATC	3 cut(s)	787, 950, 1219
NlaIII	CATG	5 cut(s)	44, 259, 326, 494, 589
NlaIV	GGNNCC	5 cut(s)	103, 620, 932, 960, 980
NmeAIII	GCCGAG	1 cut(s)	1123
NmuCI	GTSAC	5 cut(s)	146, 197, 289, 415, 545
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	1 cut(s)	494
PaeI	GCATGC	1 cut(s)	494
PagI	TCATGA	1 cut(s)	255
PaqCI	CACCTGC	1 cut(s)	40
PciSI	GCTCTTC	1 cut(s)	453
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	539
PfoI	TCCNGGA	1 cut(s)	797
PinAI	ACCGGT	1 cut(s)	1228
PleI	GAGTC	2 cut(s)	226, 810
PmaCI	CACGTG	1 cut(s)	1075
PmlI	CACGTG	1 cut(s)	1075
PpsI	GAGTC	2 cut(s)	226, 810
Ppu21I	YACGTR	1 cut(s)	1075
PsiI	TTATAA	2 cut(s)	347, 479
Psp6I	CCWGG	1 cut(s)	797
PspCI	CACGTG	1 cut(s)	1075
PspEI	GGTNACC	1 cut(s)	146
PspFI	CCCAGC	2 cut(s)	1012, 1061
PspGI	CCWGG	1 cut(s)	797
PspN4I	GGNNCC	5 cut(s)	103, 620, 932, 960, 980
PspPI	GGNCC	2 cut(s)	1047, 1059
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	787
RsaI	GTAC	4 cut(s)	240, 445, 733, 1304
RsaNI	GTAC	4 cut(s)	239, 444, 732, 1303
SacII	CCGCGG	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	453
Sau3AI	GATC	3 cut(s)	787, 950, 1219
Sau96I	GGNCC	2 cut(s)	1047, 1059
ScaI	AGTACT	2 cut(s)	733, 1304
SchI	GAGTC	2 cut(s)	226, 811
ScrFI	CCNGG	2 cut(s)	799, 885
SfaNI	GCATC	2 cut(s)	1162, 1168
SfcI	CTRYAG	2 cut(s)	564, 1298
Sfr303I	CCGCGG	1 cut(s)	221
SgrBI	CCGCGG	1 cut(s)	221
SphI	GCATGC	1 cut(s)	494
Sse9I	AATT	7 cut(s)	299, 433, 532, 589, 672, 711, 1272
SspMI	CTAG	4 cut(s)	92, 413, 723, 987
StyD4I	CCNGG	2 cut(s)	797, 883
TaaI	ACNGT	5 cut(s)	197, 252, 565, 736, 1302
TaiI	ACGT	8 cut(s)	39, 296, 501, 1077, 1137, 1173, 1192, 1211
TaqI	TCGA	2 cut(s)	657, 1218
TasI	AATT	7 cut(s)	299, 433, 532, 589, 672, 711, 1272
TatI	WGTACW	3 cut(s)	443, 731, 1302
TauI	GCSGC	7 cut(s)	776, 1042, 1090, 1097, 1105, 1112, 1119
TfiI	GAWTC	1 cut(s)	539
TscAI	CASTG	3 cut(s)	255, 456, 491
TseFI	GTSAC	5 cut(s)	146, 197, 289, 415, 545
TseI	GCWGC	4 cut(s)	699, 815, 1008, 1164
Tsp45I	GTSAC	5 cut(s)	146, 197, 289, 415, 545
TspDTI	ATGAA	7 cut(s)	13, 244, 271, 272, 339, 602, 723
TspRI	CASTG	3 cut(s)	255, 456, 491
XapI	RAATTY	2 cut(s)	433, 589
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	4 cut(s)	92, 413, 723, 987
ZrmI	AGTACT	2 cut(s)	733, 1304
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.