Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8508661.1

Orthogroup ID

OG0002520

Physical Location & Seq

Genomic Coordinates Forward (+)

1488 .. 2440

Gene Structure 953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8508661.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggcttccgaaggaacaagtcgctccctgcaagacacacccagttgggctctggcaacagtttgcttcgtcttcatctttctctctcttttcatagagcacttgatccatctcctttcccaatttctcaaaaagcatagaaagactgcattgttcgaggccgtagagaagctcaaatcagtgcttatttttctgggtttcatgtccctaatactgacagtaacacagagatggatagccaatatttgcatacccacagaagttgcaaatactatgcttccttgcagaaaatcagtatcaactaaaacaaccaaagcagttggtttcgatcgcatgtggagcaccggggcatctacagcttttgaagtaatacaaagaagactagcagaaacagaagatagtagtactactagttccacttctaccacttctgtggatgtggatcggtgcgaatcccaggggaagacctcatttatatctcaagggggactaaatcagctcaacaacttcatctttgttctggcaattatgcagatcgtgtacagtgttctgacaatggccttaggaagagccaaggtatgtgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

195

Amino Acids

21.57

Weight (kDa)

9.1

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45290
fragaria_vesca	FvH4_3g32830 FvH4_3g32830 FvH4_6g15590 FvH4_6g15590
malus_domestica	MD03G1115800.v1.1 MD04G1101400.v1.1 MD04G1101500.v1.1 MD11G1132500.v1.1 MD12G1121200.v1.1
prunus_persica	Prupe.6G097800_v2.0.a1 Prupe.6G097800_v2.0.a1 Prupe.6G097800_v2.0.a1 Prupe.6G239200_v2.0.a1
pyrus_communis	pycom04g09710 pycom11g10930 pycom12g12040
rosa_chinensis	RchiOBHm_Chr3g0469171 RchiOBHm_Chr5g0060001
rosa_laevigata	RLG00000024368 RLG00000035337
rosa_multiflora	Rmu_co8508661.1_g000001 Rmu_sc0000814.1_g000040 Rmu_sc0000890.1_g000027 Rmu_sc0012307.1_g000009 Rmu_sc0019192.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020670 Rroxscaffold_6G00412140
rosa_rugosa	Rorug03G0100100 Rorug05G0327100 Rorug05G0327200 Rorug05G0327300
rosa_samantha	Rh3AG149300 Rh3BG172600 Rh3CG163900 Rh3DG203100 Rh5AG391300 Rh5BG403800 Rh5CG427700
rosa_wichuraiana	Rw3G014090 Rw5G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	100, 450
AfaI	GTAC	2 cut(s)	406, 542
AgsI	TTSAA	1 cut(s)	365
AhlI	ACTAGT	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	456
AleI	CACNNNNGTG	1 cut(s)	431
AluBI	AGCT	3 cut(s)	172, 359, 499
AluI	AGCT	3 cut(s)	172, 359, 499
Alw21I	GWGCWC	2 cut(s)	102, 344
AlwI	GGATC	2 cut(s)	100, 450
AoxI	GGCC	2 cut(s)	159, 558
AsuC2I	CCSGG	1 cut(s)	346
AxyI	CCTNAGG	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	52
BbsI	GAAGAC	3 cut(s)	64, 385, 470
Bbv12I	GWGCWC	2 cut(s)	102, 344
BccI	CCATC	2 cut(s)	117, 225
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	458
BcnI	CCSGG	1 cut(s)	346
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	2 cut(s)	383, 411
BfmI	CTRYAG	1 cut(s)	354
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	2 cut(s)	346, 458
BmrFI	CCNGG	2 cut(s)	346, 458
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	359
BmuI	ACTGGG	1 cut(s)	36
BpiI	GAAGAC	3 cut(s)	64, 385, 470
BpuEI	CTTGAG	1 cut(s)	465
BpuMI	CCSGG	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	4 cut(s)	345, 456, 457, 573
Bse1I	ACTGG	1 cut(s)	42
Bse21I	CCTNAGG	1 cut(s)	562
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	4 cut(s)	345, 456, 457, 573
BseGI	GGATG	1 cut(s)	442
BseJI	GATNNNNATC	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	42
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	161, 560
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	2 cut(s)	102, 344
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	2 cut(s)	190, 501
BsmFI	GGGAC	2 cut(s)	190, 501
BsnI	GGCC	2 cut(s)	161, 560
Bsp1286I	GDGCHC	3 cut(s)	52, 102, 344
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	4 cut(s)	105, 328, 442, 534
BspANI	GGCC	2 cut(s)	161, 560
BspPI	GGATC	2 cut(s)	100, 450
BspQI	GCTCTTC	1 cut(s)	562
BsrGI	TGTACA	1 cut(s)	540
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	4 cut(s)	345, 456, 457, 573
BssMI	GATC	4 cut(s)	105, 328, 442, 534
BssT1I	CCWWGG	1 cut(s)	573
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	3 cut(s)	61, 220, 545
Bst6I	CTCTTC	1 cut(s)	562
BstAUI	TGTACA	1 cut(s)	540
BstDEI	CTNAG	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	4 cut(s)	108, 331, 445, 537
BstMBI	GATC	4 cut(s)	105, 328, 442, 534
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	2 cut(s)	339, 356
BstNI	CCWGG	1 cut(s)	458
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	344, 456
BstSFI	CTRYAG	1 cut(s)	354
BstV2I	GAAGAC	3 cut(s)	64, 385, 470
BstXI	CCANNNNNNTGG	1 cut(s)	433
Bsu36I	CCTNAGG	1 cut(s)	562
BsuRI	GGCC	2 cut(s)	161, 560
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	2 cut(s)	186, 550
Csp6I	GTAC	2 cut(s)	405, 541
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	2 cut(s)	202, 334
CviJI	RGCY	9 cut(s)	5, 50, 161, 172, 239, 359, 499, 560, 572
CviKI_1	RGCY	9 cut(s)	5, 50, 161, 172, 239, 359, 499, 560, 572
CviQI	GTAC	2 cut(s)	405, 541
DdeI	CTNAG	1 cut(s)	562
DpnI	GATC	4 cut(s)	107, 330, 444, 536
DpnII	GATC	4 cut(s)	105, 328, 442, 534
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	52
Eco81I	CCTNAGG	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	2 cut(s)	205, 337
FaqI	GGGAC	2 cut(s)	190, 501
FatI	CATG	2 cut(s)	201, 333
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	1 cut(s)	52
FspBI	CTAG	2 cut(s)	383, 411
HaeIII	GGCC	2 cut(s)	161, 560
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	2 cut(s)	205, 337
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	1 cut(s)	345
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	2 cut(s)	10, 552
Hpy8I	GTNNAC	1 cut(s)	541
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	3 cut(s)	61, 220, 545
HpyCH4V	TGCA	7 cut(s)	31, 149, 249, 266, 285, 532, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	339, 356
HpyF3I	CTNAG	1 cut(s)	562
Hsp92II	CATG	2 cut(s)	205, 337
Kzo9I	GATC	4 cut(s)	105, 328, 442, 534
LguI	GCTCTTC	1 cut(s)	562
LmnI	GCTCC	2 cut(s)	29, 339
LpnPI	CCDG	8 cut(s)	38, 41, 55, 179, 358, 443, 470, 506
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	2 cut(s)	383, 411
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	4 cut(s)	107, 330, 444, 536
MboI	GATC	4 cut(s)	105, 328, 442, 534
MboII	GAAGA	5 cut(s)	64, 390, 407, 475, 579
MhlI	GDGCHC	3 cut(s)	52, 102, 344
MluCI	AATT	2 cut(s)	122, 525
MnlI	CCTC	2 cut(s)	151, 478
MslI	CAYNNNNRTG	2 cut(s)	229, 431
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	346, 458
MvaI	CCWGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	2 cut(s)	339, 356
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	4 cut(s)	105, 328, 442, 534
NlaIII	CATG	2 cut(s)	205, 337
NspI	RCATGY	1 cut(s)	337
OliI	CACNNNNGTG	1 cut(s)	431
PasI	CCCWGGG	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	562
PfeI	GAWTC	1 cut(s)	452
Ple19I	CGATCG	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	456
PsrI	GAACNNNNNNTAC	2 cut(s)	397, 429
PvuI	CGATCG	1 cut(s)	331
RsaI	GTAC	2 cut(s)	406, 542
RsaNI	GTAC	2 cut(s)	405, 541
RseI	CAYNNNNRTG	2 cut(s)	229, 431
SapI	GCTCTTC	1 cut(s)	562
Sau3AI	GATC	4 cut(s)	105, 328, 442, 534
ScaI	AGTACT	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	346, 458
SduI	GDGCHC	3 cut(s)	52, 102, 344
SetI	ASST	5 cut(s)	174, 361, 470, 501, 579
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	2 cut(s)	229, 431
SmlI	CTYRAG	1 cut(s)	480
SmoI	CTYRAG	1 cut(s)	480
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	2 cut(s)	122, 525
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	2 cut(s)	383, 411
StyD4I	CCNGG	2 cut(s)	344, 456
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	3 cut(s)	61, 220, 545
TaqI	TCGA	2 cut(s)	156, 327
TasI	AATT	2 cut(s)	122, 525
TatI	WGTACW	2 cut(s)	404, 540
TfiI	GAWTC	1 cut(s)	452
TscAI	CASTG	2 cut(s)	186, 550
TspDTI	ATGAA	4 cut(s)	64, 82, 190, 499
TspRI	CASTG	2 cut(s)	186, 550
XceI	RCATGY	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XspI	CTAG	2 cut(s)	383, 411
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.