Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002520

Physical Location & Seq

Genomic Coordinates Reverse (-)

25143871 .. 25150687

Gene Structure 6817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1698 bp

ATGGAACCAACCCTCTCCCAACCGCCCCTTGGATTAAAAGCAAAATATGGCTTCCGAAGGAACAAGTCGCTCCCTGCAAGACACACCCAGTTGGGCTCTGGCAACAGTCTGCTTCGTCTTCATCTTTCTCTCTCTTTTCATAGAGCACTTGATCCATCTCCTTTCCCAATTTCTCAAAAGCATAGAAAGACTGCATTGTTCGAGGCCGTAGAGAAGCTCAAATCAGTGCTTATTCTTCTGGGTTTCATGTCCCTAATACTGACAGTAACACAGAGATGGATAGCCAATATTTGCATACCCACAAAAGTTGCATATACTATGCTTCCTTGCAGAAAATCAGCACCAACTAAAACAACCAAAGCACTTGGTTTCGATCGCATGTGGAACACCGGGGCATCTACAGCTTTTGAAGTAATACAAAGAAGACTAGCAGAAACAGAAGATACTGCTAGTTCCACTTCTACCACTTCTGAGGATCAGTGCGAATCCCAGGGGAAGACCTCATTTATATCACAAGGGGGACTAAATCAGCTCAACAACTTCATCTTTGTTCTGGCAATTATGCAGATCGTGTACAGTGTTCTGACAATGGCCTTAGGAAGAGCCAAGATGAAGCGTTGGGAAGCGTGGGAAAGAGAAACTCAGACGGTGGAATACCAAGTCGCAAATGATCCTAACCGATTCAGGTTTACAAGGCAGACGACATTTGCTCGTAGACACATGAATTCTTGTACAGGAACACCTATTCAACTGTGGATTACTCATTTGTCAACAAACAACGCATTCAATTTCCAGCAGTACATAGAACGGTCGCTGGATGATGATTTCAGAGAAGTAGTTGGCATAAGCCCTTTCATGTGGTTTATCGTCGTAATCTTCATTCTCGTAGACGTGCATGGTTGGCATGTGTATCTCTGGGTGTCATTTGTGCCACTAATTATTGTGCTGGTTCTTGGAACCAAACTGGAAGTGGTGGTAGCCAGAATGGCTCACCAACTCGGTGACCAGCATAATGTAATCAAAGGAACTCCTCTGGTTCAACCAAAGGACAGTCACTTCTGGTTCAGTAGACCGCGGTTCGTCTTGACTCTCGTACATCTCACACTGTTCATGAATGCATTTGAACTTGCTTTCTTCATTTGGGTCACGTTACAATTTGGGATACACTCTTGCTACCATGAACACATAGAGATTATCATTATAAGGGTGGTCTTAGCGGTTGTCGTTCAAGTTATGTGCAGTTACATTACTCTTCCCCTCTATGCTCTAGTGACCCAGATGGGGTCAAATTTGAAGGGTACAGCAGTGCTTGAAGAGCAAACAACAAAAGTTATAAAGCAGTGGCATGCGGACGTGAAGCAAAAGAGGAAAAAGAATAGGCAAGACAATTCAGAATCTGGTCACGATTATTCCTCTACTGTAGGAAGCAGTCAGAGAACCATGAATTCCCCAGATTTCTCTTGCCACCACCGGCACCCAACTTTTGCTGAAATGTCCCAAACGGAGATTGTCGAAGATGGTCAAGAAATTGTTGAAGAACATAAAGAAAAGGGCAGCCAAAATGAAATTGAACTGGCTAGTACTGTTTTAGCTACTGAGGGTTTGATTGTGTGGAATGATAGGTTACATAAAGATGAGCTTAAGCTCGTCGACAAGCGTCTTGAAAAAAAACAGTCTTCTACAAACGAAACATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

565

Amino Acids

64.58

Weight (kDa)

9.06

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	59 - 255	8.8e-59	Mlo family
Mlo	PF03094	254 - 481	1.2e-97	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45290
fragaria_vesca	FvH4_3g32830 FvH4_3g32830 FvH4_6g15590 FvH4_6g15590
malus_domestica	MD03G1115800.v1.1 MD04G1101400.v1.1 MD04G1101500.v1.1 MD11G1132500.v1.1 MD12G1121200.v1.1
prunus_persica	Prupe.6G097800_v2.0.a1 Prupe.6G097800_v2.0.a1 Prupe.6G097800_v2.0.a1 Prupe.6G239200_v2.0.a1
pyrus_communis	pycom04g09710 pycom11g10930 pycom12g12040
rosa_chinensis	RchiOBHm_Chr3g0469171 RchiOBHm_Chr5g0060001
rosa_laevigata	RLG00000024368 RLG00000035337
rosa_multiflora	Rmu_co8508661.1_g000001 Rmu_sc0000814.1_g000040 Rmu_sc0000890.1_g000027 Rmu_sc0012307.1_g000009 Rmu_sc0019192.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020670 Rroxscaffold_6G00412140
rosa_rugosa	Rorug03G0100100 Rorug05G0327100 Rorug05G0327200 Rorug05G0327300
rosa_samantha	Rh3AG149300 Rh3BG172600 Rh3CG163900 Rh3DG203100 Rh5AG391300 Rh5BG403800 Rh5CG427700
rosa_wichuraiana	Rw3G014090 Rw5G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1202, 1334
AccB1I	GGYRCC	1 cut(s)	1473
AccI	GTMKAC	4 cut(s)	715, 888, 1069, 1650
AccII	CGCG	1 cut(s)	1075
AciI	CCGC	5 cut(s)	23, 1073, 1075, 1217, 1349
AclWI	GGATC	3 cut(s)	146, 483, 665
AcsI	RAATTY	3 cut(s)	724, 1288, 1444
AfaI	GTAC	6 cut(s)	575, 733, 800, 1095, 1300, 1582
AfiI	CCNNNNNNNGG	2 cut(s)	29, 1281
AflII	CTTAAG	1 cut(s)	1640
AjiI	CACGTC	2 cut(s)	892, 1354
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	6 cut(s)	217, 404, 532, 1592, 1639, 1645
AluI	AGCT	6 cut(s)	217, 404, 532, 1592, 1639, 1645
Alw21I	GWGCWC	1 cut(s)	148
AlwI	GGATC	3 cut(s)	146, 483, 665
AlwNI	CAGNNNCTG	1 cut(s)	1397
AoxI	GGCC	2 cut(s)	204, 591
ApeKI	GCWGC	1 cut(s)	1554
ApoI	RAATTY	3 cut(s)	724, 1288, 1444
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	983, 1013
AxyI	CCTNAGG	1 cut(s)	595
BaeI	ACNNNNGTAYC	2 cut(s)	1290, 1323
BanI	GGYRCC	1 cut(s)	1473
BanII	GRGCYC	1 cut(s)	98
BbsI	GAAGAC	4 cut(s)	110, 430, 503, 1668
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	1566
BccI	CCATC	4 cut(s)	163, 270, 1273, 1511
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	491
BciVI	GTATCC	1 cut(s)	1155
BcnI	CCSGG	1 cut(s)	391
BfaI	CTAG	4 cut(s)	428, 450, 1268, 1578
BfmI	CTRYAG	2 cut(s)	399, 1419
BfrI	CTTAAG	1 cut(s)	1640
BfuI	GTATCC	1 cut(s)	1155
BglI	GCCNNNNNGGC	1 cut(s)	986
BisI	GCNGC	1 cut(s)	1555
BlsI	GCNGC	1 cut(s)	1556
BmcAI	AGTACT	1 cut(s)	1582
Bme1390I	CCNGG	2 cut(s)	391, 491
BmgBI	CACGTC	2 cut(s)	892, 1354
BmiI	GGNNCC	3 cut(s)	6, 958, 1475
BmrFI	CCNGG	2 cut(s)	391, 491
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	404
BmuI	ACTGGG	1 cut(s)	82
BoxI	GACNNNNGTC	1 cut(s)	1656
BpiI	GAAGAC	4 cut(s)	110, 430, 503, 1668
BpuMI	CCSGG	1 cut(s)	391
BsaJI	CCNNGG	5 cut(s)	28, 390, 489, 490, 1073
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 1281
Bse118I	RCCGGY	1 cut(s)	1470
Bse1I	ACTGG	3 cut(s)	88, 969, 1578
Bse21I	CCTNAGG	1 cut(s)	595
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	5 cut(s)	28, 390, 489, 490, 1073
BseGI	GGATG	1 cut(s)	823
BseLI	CCNNNNNNNGG	2 cut(s)	29, 1281
BseMII	CTCAG	3 cut(s)	462, 656, 1587
BseNI	ACTGG	3 cut(s)	88, 969, 1578
BseRI	GAGGAG	1 cut(s)	1020
BseXI	GCAGC	1 cut(s)	1566
BsgI	GTGCAG	1 cut(s)	1258
Bsh1236I	CGCG	1 cut(s)	1075
Bsh1285I	CGRYCG	2 cut(s)	376, 812
BshFI	GGCC	2 cut(s)	206, 593
BshNI	GGYRCC	1 cut(s)	1473
BsiEI	CGRYCG	2 cut(s)	376, 812
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	390, 1471
BslFI	GGGAC	3 cut(s)	235, 534, 1480
BslI	CCNNNNNNNGG	2 cut(s)	29, 1281
BsmFI	GGGAC	3 cut(s)	235, 534, 1480
BsmI	GAATGC	2 cut(s)	782, 1120
BsnI	GGCC	2 cut(s)	206, 593
Bsp1286I	GDGCHC	2 cut(s)	98, 148
Bsp1407I	TGTACA	2 cut(s)	573, 731
Bsp143I	GATC	5 cut(s)	151, 373, 475, 567, 670
BspACI	CCGC	5 cut(s)	23, 1073, 1075, 1217, 1349
BspANI	GGCC	2 cut(s)	206, 593
BspCNI	CTCAG	3 cut(s)	463, 655, 1588
BspFNI	CGCG	1 cut(s)	1075
BspHI	TCATGA	1 cut(s)	1110
BspLI	GGNNCC	3 cut(s)	6, 958, 1475
BspPI	GGATC	3 cut(s)	146, 483, 665
BspQI	GCTCTTC	2 cut(s)	595, 1308
BspT107I	GGYRCC	1 cut(s)	1473
BspTI	CTTAAG	1 cut(s)	1640
BsrFI	RCCGGY	1 cut(s)	1470
BsrGI	TGTACA	2 cut(s)	573, 731
BsrI	ACTGG	3 cut(s)	88, 969, 1578
BssAI	RCCGGY	1 cut(s)	1470
BssECI	CCNNGG	5 cut(s)	28, 390, 489, 490, 1073
BssMI	GATC	5 cut(s)	151, 373, 475, 567, 670
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	491
Bst6I	CTCTTC	3 cut(s)	595, 1257, 1308
BstAFI	CTTAAG	1 cut(s)	1640
BstAUI	TGTACA	2 cut(s)	573, 731
BstC8I	GCNNGC	1 cut(s)	1347
BstDEI	CTNAG	5 cut(s)	471, 595, 642, 1213, 1596
BstDSI	CCRYGG	1 cut(s)	1073
BstEII	GGTNACC	1 cut(s)	1001
BstF5I	GGATG	1 cut(s)	823
BstFNI	CGCG	1 cut(s)	1075
BstKTI	GATC	5 cut(s)	154, 376, 478, 570, 673
BstMBI	GATC	5 cut(s)	151, 373, 475, 567, 670
BstMCI	CGRYCG	2 cut(s)	376, 812
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 901, 986, 1315
BstNI	CCWGG	1 cut(s)	491
BstNSI	RCATGY	3 cut(s)	382, 908, 1349
BstPAI	GACNNNNGTC	1 cut(s)	1656
BstPI	GGTNACC	1 cut(s)	1001
BstSCI	CCNGG	2 cut(s)	389, 489
BstSFI	CTRYAG	2 cut(s)	399, 1419
BstUI	CGCG	1 cut(s)	1075
BstV1I	GCAGC	1 cut(s)	1566
BstV2I	GAAGAC	4 cut(s)	110, 430, 503, 1668
Bsu36I	CCTNAGG	1 cut(s)	595
BsuI	GTATCC	1 cut(s)	1155
BsuRI	GGCC	2 cut(s)	206, 593
BtgI	CCRYGG	1 cut(s)	1073
BtrI	CACGTC	2 cut(s)	892, 1354
BtsCI	GGATG	1 cut(s)	823
BtsI	GCAGTG	2 cut(s)	1311, 1346
BtsIMutI	CAGTG	6 cut(s)	231, 485, 583, 1103, 1311, 1346
Cac8I	GCNNGC	1 cut(s)	1347
CaiI	CAGNNNCTG	1 cut(s)	1397
CciI	TCATGA	1 cut(s)	1110
Cfr10I	RCCGGY	1 cut(s)	1470
Cfr42I	CCGCGG	1 cut(s)	1076
CseI	GACGC	1 cut(s)	1646
Csp6I	GTAC	6 cut(s)	574, 732, 799, 1094, 1299, 1581
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviQI	GTAC	6 cut(s)	574, 732, 799, 1094, 1299, 1581
DdeI	CTNAG	5 cut(s)	471, 595, 642, 1213, 1596
DpnI	GATC	5 cut(s)	153, 375, 477, 569, 672
DpnII	GATC	5 cut(s)	151, 373, 475, 567, 670
Eam1104I	CTCTTC	3 cut(s)	595, 1257, 1308
EarI	CTCTTC	3 cut(s)	595, 1257, 1308
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	98
Eco81I	CCTNAGG	1 cut(s)	595
Eco91I	GGTNACC	1 cut(s)	1001
EcoO65I	GGTNACC	1 cut(s)	1001
EcoRI	GAATTC	2 cut(s)	724, 1444
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	1120
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	28
FalI	AAGNNNNNCTT	2 cut(s)	1623, 1655
FaqI	GGGAC	3 cut(s)	235, 534, 1480
FblI	GTMKAC	4 cut(s)	715, 888, 1069, 1650
Fnu4HI	GCNGC	1 cut(s)	1555
FokI	GGATG	1 cut(s)	830
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	1555
FspBI	CTAG	4 cut(s)	428, 450, 1268, 1578
GluI	GCNGC	1 cut(s)	1555
HaeIII	GGCC	2 cut(s)	206, 593
HapII	CCGG	2 cut(s)	390, 1471
HgaI	GACGC	1 cut(s)	1646
HincII	GTYRAC	2 cut(s)	771, 1651
HindII	GTYRAC	2 cut(s)	771, 1651
HinfI	GANTC	4 cut(s)	485, 681, 1087, 1394
HpaII	CCGG	2 cut(s)	390, 1471
HphI	GGTGA	2 cut(s)	983, 1013
Hpy166II	GTNNAC	7 cut(s)	574, 690, 716, 771, 889, 1070, 1651
Hpy188I	TCNGA	7 cut(s)	56, 472, 585, 645, 830, 1393, 1434
Hpy188III	TCNNGA	5 cut(s)	1084, 1111, 1403, 1523, 1661
Hpy8I	GTNNAC	7 cut(s)	574, 690, 716, 771, 889, 1070, 1651
Hpy99I	CGWCG	2 cut(s)	872, 1652
HpyAV	CCTTC	2 cut(s)	51, 1288
HpyCH4IV	ACGT	3 cut(s)	891, 1148, 1353
HpyCH4V	TGCA	9 cut(s)	77, 194, 294, 311, 330, 565, 895, 1118, 1239
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 901, 986, 1315
HpyF3I	CTNAG	5 cut(s)	471, 595, 642, 1213, 1596
HpySE526I	ACGT	3 cut(s)	891, 1148, 1353
KspI	CCGCGG	1 cut(s)	1076
Kzo9I	GATC	5 cut(s)	151, 373, 475, 567, 670
LguI	GCTCTTC	2 cut(s)	595, 1308
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	1 cut(s)	1566
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	4 cut(s)	428, 450, 1268, 1578
MaeII	ACGT	3 cut(s)	891, 1148, 1353
MaeIII	GTNAC	9 cut(s)	265, 1001, 1052, 1144, 1149, 1241, 1270, 1400, 1623
MalI	GATC	5 cut(s)	153, 375, 477, 569, 672
MboI	GATC	5 cut(s)	151, 373, 475, 567, 670
MhlI	GDGCHC	2 cut(s)	98, 148
MlyI	GAGTC	1 cut(s)	1081
MnlI	CCTC	9 cut(s)	23, 196, 466, 511, 1041, 1268, 1359, 1423, 1591
Mph1103I	ATGCAT	1 cut(s)	1120
MseI	TTAA	2 cut(s)	35, 1641
MslI	CAYNNNNRTG	2 cut(s)	274, 1632
MspA1I	CMGCKG	1 cut(s)	1075
MspCI	CTTAAG	1 cut(s)	1640
MspI	CCGG	2 cut(s)	390, 1471
MspR9I	CCNGG	2 cut(s)	391, 491
Mva1269I	GAATGC	2 cut(s)	782, 1120
MvaI	CCWGG	1 cut(s)	491
MvnI	CGCG	1 cut(s)	1075
MwoI	GCNNNNNNNGC	4 cut(s)	401, 901, 986, 1315
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	5 cut(s)	151, 373, 475, 567, 670
NlaIV	GGNNCC	3 cut(s)	6, 958, 1475
NmuCI	GTSAC	5 cut(s)	1001, 1052, 1144, 1270, 1400
NsiI	ATGCAT	1 cut(s)	1120
NspI	RCATGY	3 cut(s)	382, 908, 1349
PaeI	GCATGC	1 cut(s)	1349
PagI	TCATGA	1 cut(s)	1110
PasI	CCCWGGG	1 cut(s)	490
PciSI	GCTCTTC	2 cut(s)	595, 1308
PctI	GAATGC	2 cut(s)	782, 1120
PfeI	GAWTC	3 cut(s)	485, 681, 1394
PkrI	GCNGC	1 cut(s)	1556
Ple19I	CGATCG	1 cut(s)	376
PleI	GAGTC	1 cut(s)	1081
PpsI	GAGTC	1 cut(s)	1081
PshAI	GACNNNNGTC	1 cut(s)	1656
PsiI	TTATAA	2 cut(s)	1202, 1334
Psp6I	CCWGG	1 cut(s)	489
PspEI	GGTNACC	1 cut(s)	1001
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	3 cut(s)	6, 958, 1475
PstNI	CAGNNNCTG	1 cut(s)	1397
PvuI	CGATCG	1 cut(s)	376
RsaI	GTAC	6 cut(s)	575, 733, 800, 1095, 1300, 1582
RsaNI	GTAC	6 cut(s)	574, 732, 799, 1094, 1299, 1581
RseI	CAYNNNNRTG	2 cut(s)	274, 1632
SacII	CCGCGG	1 cut(s)	1076
SalI	GTCGAC	1 cut(s)	1649
SapI	GCTCTTC	2 cut(s)	595, 1308
SaqAI	TTAA	2 cut(s)	35, 1641
SatI	GCNGC	1 cut(s)	1555
Sau3AI	GATC	5 cut(s)	151, 373, 475, 567, 670
ScaI	AGTACT	1 cut(s)	1582
SchI	GAGTC	1 cut(s)	1081
ScrFI	CCNGG	2 cut(s)	391, 491
SduI	GDGCHC	2 cut(s)	98, 148
SfaNI	GCATC	1 cut(s)	404
SfcI	CTRYAG	2 cut(s)	399, 1419
Sfr303I	CCGCGG	1 cut(s)	1076
SgrBI	CCGCGG	1 cut(s)	1076
SmiMI	CAYNNNNRTG	2 cut(s)	274, 1632
SmlI	CTYRAG	1 cut(s)	1640
SmoI	CTYRAG	1 cut(s)	1640
SphI	GCATGC	1 cut(s)	1349
SsiI	CCGC	5 cut(s)	23, 1073, 1075, 1217, 1349
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	4 cut(s)	428, 450, 1268, 1578
StyD4I	CCNGG	2 cut(s)	389, 489
StyI	CCWWGG	1 cut(s)	28
TaiI	ACGT	3 cut(s)	894, 1151, 1356
TaqI	TCGA	4 cut(s)	201, 372, 1512, 1650
TatI	WGTACW	4 cut(s)	573, 731, 798, 1580
TfiI	GAWTC	3 cut(s)	485, 681, 1394
Tru1I	TTAA	2 cut(s)	35, 1641
Tru9I	TTAA	2 cut(s)	35, 1641
TscAI	CASTG	6 cut(s)	231, 485, 583, 1110, 1311, 1346
TseFI	GTSAC	5 cut(s)	1001, 1052, 1144, 1270, 1400
TseI	GCWGC	1 cut(s)	1554
Tsp45I	GTSAC	5 cut(s)	1001, 1052, 1144, 1270, 1400
TspGWI	ACGGA	1 cut(s)	1517
TspRI	CASTG	6 cut(s)	231, 485, 583, 1110, 1311, 1346
Vha464I	CTTAAG	1 cut(s)	1640
XapI	RAATTY	3 cut(s)	724, 1288, 1444
XceI	RCATGY	3 cut(s)	382, 908, 1349
XcmI	CCANNNNNNNNNTGG	3 cut(s)	26, 95, 967
XmiI	GTMKAC	4 cut(s)	715, 888, 1069, 1650
XspI	CTAG	4 cut(s)	428, 450, 1268, 1578
ZrmI	AGTACT	1 cut(s)	1582
Zsp2I	ATGCAT	1 cut(s)	1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.