pycom12g10120

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0002320
Physical Location & Seq
Forward (+)
12060023 .. 12061646
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
ATGAGCCTTGTCCCCTCGTCTAAGTCCAGTCGAAGCAAAGGCATCACATTCTTCCAGATACTCGTTTGCACACAAATGGACAGGACAATGCTGGTGCCTCCATGGCTAGAACAATTGCTCACCACATCATTCTTCAGAGTCTGCCGTACACATGGAGACGCCACCAGAAGTGAGTCCAACATGTTCTGCTTAGATTGCAGTGGAGATGCTTTCTGCTTTTATTGCCGGTCCTCCAGACACAAAGATCACCAAGTGATTCAGATAAGGAGATCTTCATACCATGATGTGGTGAGGGTTTCAGAAGTTCAGAAGGTATTGGACATAACCGGAGTTCAGACATATGTCATAAACAGCGCCAGAGTTATGTTTCTGAATGAGAGGCCTCAGCCTAAGGCTGGGAGTAAAGGAGCTTCCCACATTTGTGAAACCTGTGGCAGAAGCCTCTTGGACCCTGTTCGTTTCTGCTCACTCGGCTGTAAGCTTGCGGGAATAAATAGAAATGGGGATGCAAACTTTACCTTAGAGGCAAAGAATGAGGAGGCAATGGGGGGAAGAGAAGAGTTGCGTGAAGGCTCACAACAAGACATATGCCCGCCCACGCCGCCTCCACCTCCTTCCACAACAAGAAGAAGAAAAGGCATTCCTCATAGGGCACCCTTTGGCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

223

Amino Acids

24.8

Weight (kDa)

9.16

Isoelectric Point (pI)

63.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 89 - 161 6e-31 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 94, 652
AccB7I CCANNNNNTGG 1 cut(s) 286
AciI CCGC 3 cut(s) 485, 593, 602
AcuI CTGAAG 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 159
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 2 cut(s) 286, 395
AflIII ACRYGT 1 cut(s) 180
AleI CACNNNNGTG 1 cut(s) 420
AluBI AGCT 2 cut(s) 410, 481
AluI AGCT 2 cut(s) 410, 481
Alw26I GTCTC 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 141
AoxI GGCC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 2 cut(s) 228, 448
AsuHPI GGTGA 3 cut(s) 112, 239, 301
AvaII GGWCC 2 cut(s) 228, 448
AxyI CCTNAGG 1 cut(s) 390
BaeGI GKGCMC 1 cut(s) 655
BanI GGYRCC 2 cut(s) 94, 652
BarI GAAGNNNNNNTAC 2 cut(s) 394, 426
BbvCI CCTCAGC 1 cut(s) 384
BceAI ACGGC 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 357
BglI GCCNNNNNGGC 1 cut(s) 103
BglII AGATCT 1 cut(s) 269
BisI GCNGC 1 cut(s) 602
BlsI GCNGC 1 cut(s) 603
Bme18I GGWCC 2 cut(s) 228, 448
BmgT120I GGNCC 2 cut(s) 228, 448
BmiI GGNNCC 4 cut(s) 96, 450, 654, 664
BmsI GCATC 3 cut(s) 51, 196, 496
BoxI GACNNNNGTC 1 cut(s) 341
BpmI CTGGAG 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 326
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 395
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 27
Bse21I CCTNAGG 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 549
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 511
BseLI CCNNNNNNNGG 2 cut(s) 286, 395
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 551
BseSI GKGCMC 1 cut(s) 655
BseYI CCCAGC 1 cut(s) 395
BshFI GGCC 1 cut(s) 382
BshNI GGYRCC 2 cut(s) 94, 652
BsiSI CCGG 2 cut(s) 226, 327
BslI CCNNNNNNNGG 2 cut(s) 286, 395
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 639
BsnI GGCC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 655
Bsp143I GATC 2 cut(s) 244, 269
Bsp19I CCATGG 1 cut(s) 101
BspACI CCGC 3 cut(s) 485, 593, 602
BspANI GGCC 1 cut(s) 382
BspCNI CTCAG 1 cut(s) 397
BspLI GGNNCC 4 cut(s) 96, 450, 654, 664
BspT107I GGYRCC 2 cut(s) 94, 652
BsrDI GCAATG 1 cut(s) 549
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 2 cut(s) 244, 269
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 101
Bst6I CTCTTC 2 cut(s) 547, 552
BstACI GRCGYC 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 483, 593
BstDEI CTNAG 5 cut(s) 21, 190, 384, 390, 520
BstDSI CCRYGG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 511
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 2 cut(s) 247, 272
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 244, 269
BstMWI GCNNNNNNNGC 5 cut(s) 103, 195, 222, 471, 601
BstNSI RCATGY 1 cut(s) 184
BstPAI GACNNNNGTC 1 cut(s) 341
BstSLI GKGCMC 1 cut(s) 655
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
Bsu36I CCTNAGG 1 cut(s) 390
BsuRI GGCC 1 cut(s) 382
BtgI CCRYGG 1 cut(s) 101
BtsCI GGATG 1 cut(s) 511
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 2 cut(s) 483, 593
CaiI CAGNNNCTG 1 cut(s) 141
CfoI GCGC 1 cut(s) 356
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 228, 448
CseI GACGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 147
CviAII CATG 4 cut(s) 102, 152, 181, 281
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 5 cut(s) 21, 190, 384, 390, 520
DpnI GATC 2 cut(s) 246, 271
DpnII GATC 2 cut(s) 244, 269
DraIII CACNNNGTG 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 547, 552
EarI CTCTTC 2 cut(s) 547, 552
Eco130I CCWWGG 1 cut(s) 101
Eco147I AGGCCT 1 cut(s) 382
Eco47I GGWCC 2 cut(s) 228, 448
Eco57I CTGAAG 1 cut(s) 118
Eco81I CCTNAGG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 4 cut(s) 105, 155, 184, 284
FalI AAGNNNNNCTT 2 cut(s) 256, 288
FatI CATG 4 cut(s) 101, 151, 180, 280
FauI CCCGC 2 cut(s) 478, 600
FauNDI CATATG 2 cut(s) 340, 587
Fnu4HI GCNGC 1 cut(s) 602
FokI GGATG 1 cut(s) 518
Fsp4HI GCNGC 1 cut(s) 602
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 355
GluI GCNGC 1 cut(s) 602
GsaI CCCAGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 1 cut(s) 382
HapII CCGG 2 cut(s) 226, 327
HgaI GACGC 1 cut(s) 167
HhaI GCGC 1 cut(s) 356
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 4 cut(s) 105, 155, 184, 284
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 3 cut(s) 138, 173, 256
HpaII CCGG 2 cut(s) 226, 327
HphI GGTGA 3 cut(s) 112, 239, 301
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 6 cut(s) 137, 261, 301, 309, 336, 372
Hpy188III TCNNGA 2 cut(s) 55, 234
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 3 cut(s) 304, 563, 624
HpyCH4V TGCA 3 cut(s) 69, 198, 509
HpyF10VI GCNNNNNNNGC 5 cut(s) 103, 195, 222, 471, 601
HpyF3I CTNAG 5 cut(s) 21, 190, 384, 390, 520
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 4 cut(s) 105, 155, 184, 284
HspAI GCGC 1 cut(s) 354
Kzo9I GATC 2 cut(s) 244, 269
LmnI GCTCC 2 cut(s) 407, 668
LweI GCATC 3 cut(s) 51, 196, 496
MaeI CTAG 1 cut(s) 107
MalI GATC 2 cut(s) 246, 271
MboI GATC 2 cut(s) 244, 269
MboII GAAGA 7 cut(s) 43, 124, 264, 564, 569, 639, 642
MfeI CAATTG 1 cut(s) 113
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 655
MluCI AATT 1 cut(s) 113
MlyI GAGTC 2 cut(s) 147, 182
MmeI TCCRAC 1 cut(s) 201
MslI CAYNNNNRTG 2 cut(s) 74, 420
MspI CCGG 2 cut(s) 226, 327
MunI CAATTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 639
MwoI GCNNNNNNNGC 5 cut(s) 103, 195, 222, 471, 601
NcoI CCATGG 1 cut(s) 101
NdeI CATATG 2 cut(s) 340, 587
NdeII GATC 2 cut(s) 244, 269
NlaIII CATG 4 cut(s) 105, 155, 184, 284
NlaIV GGNNCC 4 cut(s) 96, 450, 654, 664
NmeAIII GCCGAG 1 cut(s) 450
NspI RCATGY 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 420
PceI AGGCCT 1 cut(s) 382
PciI ACATGT 1 cut(s) 180
PctI GAATGC 1 cut(s) 639
PfeI GAWTC 1 cut(s) 256
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 1 cut(s) 603
PleI GAGTC 2 cut(s) 146, 181
PpsI GAGTC 2 cut(s) 146, 181
PscI ACATGT 1 cut(s) 180
PshAI GACNNNNGTC 1 cut(s) 341
PspFI CCCAGC 1 cut(s) 395
PspN4I GGNNCC 4 cut(s) 96, 450, 654, 664
PspPI GGNCC 2 cut(s) 228, 448
PstNI CAGNNNCTG 1 cut(s) 141
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 2 cut(s) 74, 420
SatI GCNGC 1 cut(s) 602
Sau3AI GATC 2 cut(s) 244, 269
Sau96I GGNCC 2 cut(s) 228, 448
SchI GAGTC 2 cut(s) 147, 182
SduI GDGCHC 1 cut(s) 655
SetI ASST 6 cut(s) 315, 412, 431, 483, 521, 613
SfaNI GCATC 3 cut(s) 51, 196, 496
SinI GGWCC 2 cut(s) 228, 448
SmiMI CAYNNNNRTG 2 cut(s) 74, 420
Sse9I AATT 1 cut(s) 113
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 3 cut(s) 485, 593, 602
SspMI CTAG 1 cut(s) 107
StuI AGGCCT 1 cut(s) 382
StyI CCWWGG 1 cut(s) 101
TaqI TCGA 1 cut(s) 31
TasI AATT 1 cut(s) 113
TauI GCSGC 1 cut(s) 604
TfiI GAWTC 1 cut(s) 256
TscAI CASTG 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 264
TspRI CASTG 1 cut(s) 205
Van91I CCANNNNNTGG 1 cut(s) 286
VpaK11BI GGWCC 2 cut(s) 228, 448
XceI RCATGY 1 cut(s) 184
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.