pycom12g17170

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0001888
Physical Location & Seq
Forward (+)
19505078 .. 19506187
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 468 bp
ATGATAAGATCGATCTTTAAAGTGAAGGGAGTTCGATGGAGCCGTCATGATCGTCGAGTCTTGCTCGATACTGCCGGATATCCTATTGTCACCCTAAGAAAGAAGTTGATGAGTGCACATGAAAGATGGCAAGTTTTCCGGGGGGATAGCAAAGACTCAAGGGATCTGATTTTTAGTGCCAAGAGATCTTCACTGCTGCAATTTAATACCAAACTAGATGTTTTCTTAGCACAAAACACAGCAGAGAATGCACCGGACTTCAGAGTCAAGGGAAGTTGGTTTGAACGATCTTGTACCATATATGCTGGGAACTCCTCCACAATCATTGCCCAAATGCATAAGAAGCGAACAGTTGCAAGCATGTTGATTGGCAAGGACAATTTCATGGTGACAGTGTATCCCGGGATTGACTACGCTTTCATTGTCGCGCTTATTGTGATTCTTGATGAGATTAATAGTGATGATTAA

Protein Analysis

156

Amino Acids

17.78

Weight (kDa)

9.83

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 4 - 149 9.6e-45 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AccII CGCG 1 cut(s) 428
AclWI GGATC 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 244
AfaI GTAC 1 cut(s) 295
AgsI TTSAA 1 cut(s) 284
Alw21I GWGCWC 1 cut(s) 118
Alw44I GTGCAC 1 cut(s) 114
AlwI GGATC 1 cut(s) 171
Ama87I CYCGRG 1 cut(s) 401
ApaLI GTGCAC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 196
AseI ATTAAT 1 cut(s) 453
AspLEI GCGC 1 cut(s) 430
AsuC2I CCSGG 3 cut(s) 140, 402, 403
AsuHPI GGTGA 2 cut(s) 82, 400
AvaI CYCGRG 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 183
BccI CCATC 2 cut(s) 30, 120
BceAI ACGGC 1 cut(s) 27
BciVI GTATCC 1 cut(s) 408
BcnI CCSGG 3 cut(s) 140, 402, 403
BfaI CTAG 1 cut(s) 215
BfuI GTATCC 1 cut(s) 408
BglII AGATCT 1 cut(s) 185
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 3 cut(s) 140, 402, 403
BmeT110I CYCGRG 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 3 cut(s) 140, 402, 403
BplI GAGNNNNNCTC 2 cut(s) 48, 80
BpuEI CTTGAG 1 cut(s) 142
BpuMI CCSGG 3 cut(s) 140, 402, 403
Bsa29I ATCGAT 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 139, 401
BsaWI WCCGGW 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 324
BseCI ATCGAT 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 139, 401
BseMI GCAATG 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 304
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 428
BshVI ATCGAT 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 4 cut(s) 75, 139, 254, 402
BsmI GAATGC 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 6 cut(s) 8, 12, 49, 163, 185, 287
BspDI ATCGAT 1 cut(s) 11
BspFNI CGCG 1 cut(s) 428
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 41
BspPI GGATC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 324
BssECI CCNNGG 2 cut(s) 139, 401
BssMI GATC 6 cut(s) 8, 12, 49, 163, 185, 287
Bst4CI ACNGT 2 cut(s) 352, 394
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 2 cut(s) 95, 226
BstFNI CGCG 1 cut(s) 428
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 6 cut(s) 11, 15, 52, 166, 188, 290
BstMBI GATC 6 cut(s) 8, 12, 49, 163, 185, 287
BstMWI GCNNNNNNNGC 2 cut(s) 248, 343
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 3 cut(s) 138, 400, 401
BstSLI GKGCMC 1 cut(s) 118
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 163, 185
BstYI RGATCY 2 cut(s) 163, 185
Bsu15I ATCGAT 1 cut(s) 11
BsuI GTATCC 1 cut(s) 408
BsuTUI ATCGAT 1 cut(s) 11
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 2 cut(s) 191, 399
Cac8I GCNNGC 1 cut(s) 358
CciI TCATGA 1 cut(s) 46
CfoI GCGC 1 cut(s) 430
Cfr9I CCCGGG 1 cut(s) 401
ClaI ATCGAT 1 cut(s) 11
Csp6I GTAC 1 cut(s) 294
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 4 cut(s) 47, 119, 361, 385
CviJI RGCY 1 cut(s) 42
CviKI_1 RGCY 1 cut(s) 42
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 2 cut(s) 95, 226
DpnI GATC 6 cut(s) 10, 14, 51, 165, 187, 289
DpnII GATC 6 cut(s) 8, 12, 49, 163, 185, 287
DraI TTTAAA 1 cut(s) 19
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
Eco32I GATATC 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 401
EcoRV GATATC 1 cut(s) 80
EcoT22I ATGCAT 1 cut(s) 339
FaeI CATG 4 cut(s) 50, 122, 364, 388
FaiI YATR 8 cut(s) 48, 120, 299, 301, 303, 339, 362, 386
FatI CATG 4 cut(s) 46, 118, 360, 384
Fnu4HI GCNGC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 1 cut(s) 215
GlaI GCGC 1 cut(s) 429
GluI GCNGC 1 cut(s) 197
GsaI CCCAGC 1 cut(s) 309
HapII CCGG 4 cut(s) 75, 139, 254, 402
HhaI GCGC 1 cut(s) 430
Hin1II CATG 4 cut(s) 50, 122, 364, 388
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HinfI GANTC 4 cut(s) 57, 155, 264, 439
HpaII CCGG 4 cut(s) 75, 139, 254, 402
HphI GGTGA 2 cut(s) 82, 400
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 2 cut(s) 168, 263
Hpy188III TCNNGA 2 cut(s) 47, 443
Hpy8I GTNNAC 1 cut(s) 116
Hpy99I CGWCG 1 cut(s) 57
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 352, 394
HpyCH4V TGCA 5 cut(s) 116, 199, 251, 337, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 343
HpyF3I CTNAG 2 cut(s) 95, 226
Hsp92II CATG 4 cut(s) 50, 122, 364, 388
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 6 cut(s) 8, 12, 49, 163, 185, 287
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 5 cut(s) 88, 152, 267, 291, 415
Lsp1109I GCAGC 1 cut(s) 183
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 88, 388
MalI GATC 6 cut(s) 10, 14, 51, 165, 187, 289
MboI GATC 6 cut(s) 8, 12, 49, 163, 185, 287
MboII GAAGA 1 cut(s) 180
MflI RGATCY 2 cut(s) 163, 185
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 2 cut(s) 200, 379
MlyI GAGTC 3 cut(s) 66, 149, 273
MnlI CCTC 1 cut(s) 325
Mph1103I ATGCAT 1 cut(s) 339
MseI TTAA 4 cut(s) 18, 204, 453, 466
MspI CCGG 4 cut(s) 75, 139, 254, 402
MspR9I CCNGG 3 cut(s) 140, 402, 403
Mva1269I GAATGC 1 cut(s) 253
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 248, 343
NciI CCSGG 3 cut(s) 140, 402, 403
NdeII GATC 6 cut(s) 8, 12, 49, 163, 185, 287
NlaIII CATG 4 cut(s) 50, 122, 364, 388
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 2 cut(s) 88, 388
NsiI ATGCAT 1 cut(s) 339
NspI RCATGY 1 cut(s) 364
PagI TCATGA 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 40
PctI GAATGC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 3 cut(s) 65, 149, 272
PpsI GAGTC 3 cut(s) 65, 149, 272
PshBI ATTAAT 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 41
PsuI RGATCY 2 cut(s) 163, 185
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SaqAI TTAA 4 cut(s) 18, 204, 453, 466
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 6 cut(s) 8, 12, 49, 163, 185, 287
SchI GAGTC 3 cut(s) 66, 149, 273
ScrFI CCNGG 3 cut(s) 140, 402, 403
SduI GDGCHC 1 cut(s) 118
SmaI CCCGGG 1 cut(s) 403
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 2 cut(s) 200, 379
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 138, 400, 401
TaaI ACNGT 2 cut(s) 352, 394
TaqI TCGA 4 cut(s) 11, 34, 55, 66
TasI AATT 2 cut(s) 200, 379
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 4 cut(s) 18, 204, 453, 466
Tru9I TTAA 4 cut(s) 18, 204, 453, 466
TscAI CASTG 2 cut(s) 198, 399
TseFI GTSAC 2 cut(s) 88, 388
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 2 cut(s) 88, 388
TspDTI ATGAA 3 cut(s) 135, 373, 409
TspMI CCCGGG 1 cut(s) 401
TspRI CASTG 2 cut(s) 198, 399
VneI GTGCAC 1 cut(s) 114
VspI ATTAAT 1 cut(s) 453
XceI RCATGY 1 cut(s) 364
XmaI CCCGGG 1 cut(s) 401
XspI CTAG 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.