Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002839

Physical Location & Seq

Genomic Coordinates Reverse (-)

6651345 .. 6656371

Gene Structure 5027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGAAGGTGGTTCCGAGAGAAGCTGAGAAACTAAGCCTAAACAATGCTGGGTTTTTGGCGCAGAAGCGTCTTGCTCGAGGGTTGAGGCTGAATCACCCAGAAGCTGCAGCTCTCATAGCCACACAGATTTTGGAGTTCGTTCGAAATGGGGATAAATCTGTGGCGGAATTGATGGACATTGGGAGACAGCTGCTGGGAAGGAAACAAGTTCTTCCTGGTGTTCACTATCTTTTGGATATGGTGCAGGTTGAAGGGACTTTTCGTGATGGGACCAAGTTAATCACCATTCACGATCCAATTTCTAGGGAGAACGGAAATCTGGAACTAGCTTTGAAGGATTCTTTTCTTCCTGTTCCCTCACTAGACAAGTTTCCTGAAATGGAAGATGGTAAAATTCCGGGTGAAATTATCTATGGAGGTGGTAGTATTGTGCTTAATCATGGAAGGAAAGCAATACTCCTCAGAGTTGTTAACCAAGGAGACAGACCGGTTCAGGTTGGCAGTCATTATCACTTCATTGAGGTCAACCCCAGCCTGGTTTTTGATCGAATGAAATCATATGGCATGCGCTTGAATATACCAGCTGGAACAGCCAAGAGATTTGAGCCGGGGGAATGCAAACATGTCGCACTTGTAAGTATTGGAGGTAATAGAGTAATCAGAGGGGGAAATTGCATTGGGGATGGTTCAGTAGATGATGGCAAACTAAAGGAAGTCATGGAAGCCATACAAGCAAAAGAATTTGGACATGAGGAAGAACCAAAAGCTAGTGAAGGTGTTGCAAGAAGCGATCCAGCTTTCACCACTGTAATTTCTCATGAGGCATATGCAAACTTGTATGGACCTACTACTGGTGATAAAGTTCGGCTTGGTGATACCAACTTGTTTGCTGAAATTGAAAAGGATTTTACTGTTTATGGGGATGAATCCGTATTTGGAGGTGGTAAAGTTATAAGAGAAGGAATGGGCCAGTCATCTGGGAACCACCCAGCTAATTCATTGGATACGGTTATAACTAATGCTGTGATCATTGATTATAGCGGGATATATAAGGCAGATATTGGTATCAAAGATGGTGACATTTTTGCCCTTGGAAAGTCAGGCAATCCAGATGTTATGAATGGTGTAAATATGACCATTGGGGTTAACACAGAGGTCATTGCGGGGGAAGGTATGATTGTGACTGCAGGAGCAATAGACTGTCACGTGCACTTCATATGCCCTCAATTAGCATATGAAGCAATATCGAGTGGTATCACAACCTTAGTGGGAGGTGGAACAGGACCTGCTACTGGGACTCGTGCAACAACTTGTACACCAGCCCCATTACACATGAAGTTAATGCTGCAAGCAACTGACGACCTGCCTCTAAATTTTGGATTTACTGGGAAGGGGAACACTGCCAAACCCGAAGGGATGCATGATATTCTAAAGGCTGGGGCAATGGGACTGAAGCTGCATGAGGACTGGGGAAGCACTCCTGCTGCAATCGACAATTGTTTGGCTGTTGGAGATCAATATGACATCCAGGTTAACATCCATACAGACACCTTGAATGAATCTGGATTTGTAGAGCATACAATTGCTGCATTTAAAGGAAGAACTATCCATACTTACCACAGTGAAGGTGCAGGTGGGGGCCATGCTCCAGATATAATCAAAGTCTGCGGTGTGAAAAATGTCCTGCCATCATCAACGAATCCCACGCGGCCTTTCACCTCAAATACTATAGATGAGCATCTTGATATGCTGATGGTTTGCCATCACCTTGACAAGGACATTCCAGAAGATGTAGCTTTTGCTGAATCAAGAATAAGGGCTGAAACAATTGCTGCAGAAGATATTTTGCACGATATGGGGGCAATTAGCATTGTAGCTTCTGATTCACAGGCTATGGGTCGCATCGGAGAGGTGATAATCAGAACTTGGCAAACAGCTGACAAGATGAAATCACAAAGAGGGTCGATAGAACCTAGTGGATCTGACAATGACAACTCTAAAGATCCGGATCAAACGATACATCGCAAAGTACACTATAAATCCAGCAATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009039 GO:0016787 GO:0016810 GO:0016811

KEGG Pathways

Metabolic & Signaling

ko00220 ko00230 ko00791 ko01100 ko01120 map00220 map00230 map00791 map01100 map01120

Pfam Domains

Protein Families

Amidohydro_1 Urease_alpha Urease_beta Urease_gamma

Protein Analysis

685

Amino Acids

73.49

Weight (kDa)

5.61

Isoelectric Point (pI)

28.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Urease_gamma	PF00547	1 - 100	1.2e-39	Urease, gamma subunit
Urease_beta	PF00699	133 - 228	5.6e-40	Urease beta subunit
Urease_linker	PF18473	231 - 264	2.9e-09	Urease subunit beta-alpha linker domain
Urease_alpha	PF00449	271 - 387	8.3e-54	Urease alpha-subunit, N-terminal domain
Amidohydro_1	PF01979	393 - 660	1.3e-55	Amidohydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67550
fragaria_vesca	FvH4_4g24160 FvH4_4g24160 FvH4_4g24160
malus_domestica	MD13G1114100.v1.1 MD13G1114500.v1.1 MD13G1114900.v1.1 MD13G1115100.v1.1 MD16G1113300.v1.1 MD16G1113700.v1.1
prunus_persica	Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1
pyrus_communis	pycom13g09950 pycom16g09630 pycom16g09640 pycom16g09650
rosa_chinensis	RchiOBHm_Chr1g0326041 RchiOBHm_Chr4g0430931
rosa_laevigata	RLG00000006937
rosa_multiflora	Rmu_sc0006022.1_g000001 Rmu_ssc0000176.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223360 Rroxscaffold_5G00372620
rosa_rugosa	Rorug02G0437300 Rorug04G0247300 Rorug05G0134300
rosa_samantha	Rh2BG408000 Rh4AG303000 Rh4AG303900 Rh4BG311200 Rh4CG327500 Rh4DG307300 Rh7CG419200 Rh7CG419300 Rh7CG439900
rosa_wichuraiana	Rw4G026340 Rw7G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	953, 1013
AarI	CACCTGC	1 cut(s)	1622
Acc36I	ACCTGC	4 cut(s)	235, 1294, 1371, 1622
AccII	CGCG	1 cut(s)	1708
AccIII	TCCGGA	1 cut(s)	2005
AciI	CCGC	5 cut(s)	164, 1041, 1163, 1668, 1708
AclWI	GGATC	5 cut(s)	287, 785, 1987, 1997, 2016
AcsI	RAATTY	3 cut(s)	393, 740, 1372
AcuI	CTGAAG	1 cut(s)	1472
AcvI	CACGTG	1 cut(s)	1207
AfaI	GTAC	2 cut(s)	1315, 2031
AfiI	CCNNNNNNNGG	4 cut(s)	535, 851, 1292, 1774
AflIII	ACRYGT	1 cut(s)	622
AgeI	ACCGGT	1 cut(s)	487
AgsI	TTSAA	5 cut(s)	251, 334, 574, 899, 1555
AjnI	CCWGG	3 cut(s)	214, 534, 1527
AjuI	GAANNNNNNNTTGG	2 cut(s)	918, 950
Alw21I	GWGCWC	1 cut(s)	1212
Alw26I	GTCTC	2 cut(s)	178, 474
Alw44I	GTGCAC	1 cut(s)	1208
AlwI	GGATC	5 cut(s)	287, 785, 1987, 1997, 2016
AlwNI	CAGNNNCTG	3 cut(s)	104, 193, 1286
Ama87I	CYCGRG	1 cut(s)	75
Aor13HI	TCCGGA	1 cut(s)	2005
AoxI	GGCC	3 cut(s)	967, 1639, 1709
ApaLI	GTGCAC	1 cut(s)	1208
ApeKI	GCWGC	8 cut(s)	104, 107, 190, 1345, 1456, 1484, 1586, 1832
ApoI	RAATTY	3 cut(s)	393, 740, 1372
AsiGI	ACCGGT	1 cut(s)	487
AspLEI	GCGC	2 cut(s)	61, 570
AspS9I	GGNCC	5 cut(s)	270, 842, 967, 1283, 1639
AsuC2I	CCSGG	2 cut(s)	399, 609
AsuII	TTCGAA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	3 cut(s)	270, 842, 1283
BaeGI	GKGCMC	1 cut(s)	1212
BauI	CACGAG	1 cut(s)	1299
BbrPI	CACGTG	1 cut(s)	1207
Bbv12I	GWGCWC	1 cut(s)	1212
BbvI	GCAGC	8 cut(s)	91, 119, 177, 1332, 1443, 1471, 1573, 1819
BccI	CCATC	9 cut(s)	166, 260, 380, 677, 692, 1067, 1696, 1747, 1770
BcgI	CGANNNNNNTGC	2 cut(s)	607, 641
BciT130I	CCWGG	3 cut(s)	216, 536, 1529
BciVI	GTATCC	1 cut(s)	997
BclI	TGATCA	1 cut(s)	1026
BcnI	CCSGG	2 cut(s)	399, 609
BcoDI	GTCTC	2 cut(s)	178, 474
BfaI	CTAG	5 cut(s)	303, 326, 362, 768, 1974
BfmI	CTRYAG	4 cut(s)	105, 1185, 1728, 1833
BfuAI	ACCTGC	4 cut(s)	235, 1294, 1371, 1622
BfuI	GTATCC	1 cut(s)	997
BisI	GCNGC	9 cut(s)	105, 108, 191, 1346, 1457, 1485, 1587, 1709, 1833
BlsI	GCNGC	9 cut(s)	106, 109, 192, 1347, 1458, 1486, 1588, 1710, 1834
Bme1390I	CCNGG	5 cut(s)	216, 399, 536, 609, 1529
Bme18I	GGWCC	3 cut(s)	270, 842, 1283
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	5 cut(s)	270, 842, 967, 1283, 1639
BmiI	GGNNCC	4 cut(s)	12, 271, 983, 1640
BmrFI	CCNGG	5 cut(s)	216, 399, 536, 609, 1529
BmrI	ACTGGG	3 cut(s)	1302, 1395, 1477
BmsI	GCATC	3 cut(s)	1407, 1747, 1911
BmuI	ACTGGG	3 cut(s)	1302, 1395, 1477
BpmI	CTGGAG	1 cut(s)	1632
Bpu14I	TTCGAA	1 cut(s)	142
BpuMI	CCSGG	2 cut(s)	399, 609
BsaAI	YACGTR	1 cut(s)	1207
BsaBI	GATNNNNATC	2 cut(s)	1737, 2007
BsaJI	CCNNGG	3 cut(s)	475, 608, 1090
BsaWI	WCCGGW	2 cut(s)	487, 2005
Bsc4I	CCNNNNNNNGG	4 cut(s)	535, 851, 1292, 1774
Bse118I	RCCGGY	1 cut(s)	487
Bse1I	ACTGG	5 cut(s)	856, 970, 1297, 1390, 1472
Bse3DI	GCAATG	2 cut(s)	1158, 1449
Bse8I	GATNNNNATC	2 cut(s)	1737, 2007
BseAI	TCCGGA	1 cut(s)	2005
BseBI	CCWGG	3 cut(s)	216, 536, 1529
BseDI	CCNNGG	3 cut(s)	475, 608, 1090
BseGI	GGATG	5 cut(s)	688, 928, 1422, 1524, 1536
BseJI	GATNNNNATC	2 cut(s)	1737, 2007
BseLI	CCNNNNNNNGG	4 cut(s)	535, 851, 1292, 1774
BseMI	GCAATG	2 cut(s)	1158, 1449
BseMII	CTCAG	2 cut(s)	15, 475
BseNI	ACTGG	5 cut(s)	856, 970, 1297, 1390, 1472
BseRI	GAGGAG	1 cut(s)	449
BseSI	GKGCMC	1 cut(s)	1212
BseXI	GCAGC	8 cut(s)	91, 119, 177, 1332, 1443, 1471, 1573, 1819
BseYI	CCCAGC	5 cut(s)	47, 193, 530, 988, 1436
BsgI	GTGCAG	2 cut(s)	263, 1650
Bsh1236I	CGCG	1 cut(s)	1708
BshFI	GGCC	3 cut(s)	969, 1641, 1711
BshTI	ACCGGT	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	1212
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	4 cut(s)	398, 488, 608, 2006
BslFI	GGGAC	4 cut(s)	268, 283, 1309, 1461
BslI	CCNNNNNNNGG	4 cut(s)	535, 851, 1292, 1774
BsmAI	GTCTC	2 cut(s)	178, 474
BsmFI	GGGAC	4 cut(s)	268, 283, 1309, 1461
BsmI	GAATGC	1 cut(s)	620
BsnI	GGCC	3 cut(s)	969, 1641, 1711
BsoBI	CYCGRG	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	1212
Bsp13I	TCCGGA	1 cut(s)	2005
Bsp1407I	TGTACA	1 cut(s)	1313
Bsp143I	GATC	8 cut(s)	292, 544, 790, 1026, 1513, 1979, 2002, 2008
BspACI	CCGC	5 cut(s)	164, 1041, 1163, 1668, 1708
BspANI	GGCC	3 cut(s)	969, 1641, 1711
BspCNI	CTCAG	2 cut(s)	16, 474
BspEI	TCCGGA	1 cut(s)	2005
BspFNI	CGCG	1 cut(s)	1708
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	4 cut(s)	12, 271, 983, 1640
BspMAI	CTGCAG	3 cut(s)	109, 1189, 1837
BspMI	ACCTGC	4 cut(s)	235, 1294, 1371, 1622
BspPI	GGATC	5 cut(s)	287, 785, 1987, 1997, 2016
BspT104I	TTCGAA	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	1158, 1449
BsrFI	RCCGGY	1 cut(s)	487
BsrGI	TGTACA	1 cut(s)	1313
BsrI	ACTGG	5 cut(s)	856, 970, 1297, 1390, 1472
BssAI	RCCGGY	1 cut(s)	487
BssECI	CCNNGG	3 cut(s)	475, 608, 1090
BssMI	GATC	8 cut(s)	292, 544, 790, 1026, 1513, 1979, 2002, 2008
BssSI	CACGAG	1 cut(s)	1299
BssT1I	CCWWGG	2 cut(s)	475, 1090
Bst2BI	CACGAG	1 cut(s)	1299
Bst2UI	CCWGG	3 cut(s)	216, 536, 1529
Bst4CI	ACNGT	5 cut(s)	808, 913, 1009, 1202, 1622
BstAUI	TGTACA	1 cut(s)	1313
BstBAI	YACGTR	1 cut(s)	1207
BstBI	TTCGAA	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	566, 1350
BstDEI	CTNAG	4 cut(s)	24, 32, 461, 1264
BstENI	CCTNNNNNAGG	1 cut(s)	1772
BstF5I	GGATG	5 cut(s)	688, 928, 1422, 1524, 1536
BstFNI	CGCG	1 cut(s)	1708
BstHHI	GCGC	2 cut(s)	61, 570
BstKTI	GATC	8 cut(s)	295, 547, 793, 1029, 1516, 1982, 2005, 2011
BstMAI	GTCTC	2 cut(s)	178, 474
BstMBI	GATC	8 cut(s)	292, 544, 790, 1026, 1513, 1979, 2002, 2008
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 590, 731, 1238
BstNI	CCWGG	3 cut(s)	216, 536, 1529
BstNSI	RCATGY	2 cut(s)	568, 626
BstSCI	CCNGG	5 cut(s)	214, 397, 534, 607, 1527
BstSFI	CTRYAG	4 cut(s)	105, 1185, 1728, 1833
BstSLI	GKGCMC	1 cut(s)	1212
BstUI	CGCG	1 cut(s)	1708
BstV1I	GCAGC	8 cut(s)	91, 119, 177, 1332, 1443, 1471, 1573, 1819
BstX2I	RGATCY	2 cut(s)	1979, 2002
BstXI	CCANNNNNNTGG	1 cut(s)	977
BstYI	RGATCY	2 cut(s)	1979, 2002
BsuI	GTATCC	1 cut(s)	997
BsuRI	GGCC	3 cut(s)	969, 1641, 1711
BtgZI	GCGATG	1 cut(s)	2006
BtsCI	GGATG	5 cut(s)	688, 928, 1422, 1524, 1536
BtsI	GCAGTG	1 cut(s)	1398
BtsIMutI	CAGTG	3 cut(s)	804, 1398, 1627
BveI	ACCTGC	4 cut(s)	235, 1294, 1371, 1622
Cac8I	GCNNGC	2 cut(s)	566, 1350
CaiI	CAGNNNCTG	3 cut(s)	104, 193, 1286
CciI	TCATGA	1 cut(s)	817
CfoI	GCGC	2 cut(s)	61, 570
Cfr10I	RCCGGY	1 cut(s)	487
Cfr13I	GGNCC	5 cut(s)	270, 842, 967, 1283, 1639
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	1314, 2030
CspAI	ACCGGT	1 cut(s)	487
CspCI	CAANNNNNGTGG	2 cut(s)	1248, 1283
CviQI	GTAC	2 cut(s)	1314, 2030
DdeI	CTNAG	4 cut(s)	24, 32, 461, 1264
DpnI	GATC	8 cut(s)	294, 546, 792, 1028, 1515, 1981, 2004, 2010
DpnII	GATC	8 cut(s)	292, 544, 790, 1026, 1513, 1979, 2002, 2008
DraI	TTTAAA	1 cut(s)	1594
EciI	GGCGGA	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	475, 1090
Eco47I	GGWCC	3 cut(s)	270, 842, 1283
Eco57I	CTGAAG	1 cut(s)	1472
Eco72I	CACGTG	1 cut(s)	1207
Eco88I	CYCGRG	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	1772
EcoO109I	RGGNCCY	1 cut(s)	1283
EcoRII	CCWGG	3 cut(s)	214, 534, 1527
EcoT14I	CCWWGG	2 cut(s)	475, 1090
EcoT22I	ATGCAT	1 cut(s)	1422
ErhI	CCWWGG	2 cut(s)	475, 1090
FalI	AAGNNNNNCTT	2 cut(s)	852, 884
FaqI	GGGAC	4 cut(s)	268, 283, 1309, 1461
FauI	CCCGC	2 cut(s)	1034, 1156
FauNDI	CATATG	4 cut(s)	559, 826, 1217, 1234
FbaI	TGATCA	1 cut(s)	1026
Fnu4HI	GCNGC	9 cut(s)	105, 108, 191, 1346, 1457, 1485, 1587, 1709, 1833
FokI	GGATG	5 cut(s)	695, 935, 1429, 1511, 1523
Fsp4HI	GCNGC	9 cut(s)	105, 108, 191, 1346, 1457, 1485, 1587, 1709, 1833
FspBI	CTAG	5 cut(s)	303, 326, 362, 768, 1974
GlaI	GCGC	2 cut(s)	60, 569
GluI	GCNGC	9 cut(s)	105, 108, 191, 1346, 1457, 1485, 1587, 1709, 1833
GsaI	CCCAGC	5 cut(s)	51, 197, 534, 992, 1440
GsuI	CTGGAG	1 cut(s)	1632
HaeIII	GGCC	3 cut(s)	969, 1641, 1711
HapII	CCGG	4 cut(s)	398, 488, 608, 2006
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	2 cut(s)	61, 570
Hin6I	GCGC	2 cut(s)	59, 568
HinP1I	GCGC	2 cut(s)	59, 568
HincII	GTYRAC	4 cut(s)	472, 526, 1147, 1534
HindII	GTYRAC	4 cut(s)	472, 526, 1147, 1534
HinfI	GANTC	8 cut(s)	91, 338, 926, 1297, 1559, 1699, 1805, 1883
HpaI	GTTAAC	3 cut(s)	472, 1147, 1534
HpaII	CCGG	4 cut(s)	398, 488, 608, 2006
Hpy166II	GTNNAC	8 cut(s)	223, 472, 526, 1147, 1210, 1316, 1534, 2032
Hpy188I	TCNGA	7 cut(s)	15, 464, 662, 1882, 1907, 1922, 1984
Hpy8I	GTNNAC	8 cut(s)	223, 472, 526, 1147, 1210, 1316, 1534, 2032
HpyCH4III	ACNGT	5 cut(s)	808, 913, 1009, 1202, 1622
HpyCH4IV	ACGT	1 cut(s)	1206
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 590, 731, 1238
HpyF3I	CTNAG	4 cut(s)	24, 32, 461, 1264
HpySE526I	ACGT	1 cut(s)	1206
HspAI	GCGC	2 cut(s)	59, 568
Kpn2I	TCCGGA	1 cut(s)	2005
Ksp22I	TGATCA	1 cut(s)	1026
KspAI	GTTAAC	3 cut(s)	472, 1147, 1534
Kzo9I	GATC	8 cut(s)	292, 544, 790, 1026, 1513, 1979, 2002, 2008
LmnI	GCTCC	2 cut(s)	1190, 1651
Lsp1109I	GCAGC	8 cut(s)	91, 119, 177, 1332, 1443, 1471, 1573, 1819
LweI	GCATC	3 cut(s)	1407, 1747, 1911
MaeI	CTAG	5 cut(s)	303, 326, 362, 768, 1974
MaeII	ACGT	1 cut(s)	1206
MaeIII	GTNAC	3 cut(s)	1076, 1180, 1202
MalI	GATC	8 cut(s)	294, 546, 792, 1028, 1515, 1981, 2004, 2010
MboI	GATC	8 cut(s)	292, 544, 790, 1026, 1513, 1979, 2002, 2008
MboII	GAAGA	7 cut(s)	203, 338, 395, 767, 1611, 1799, 1850
MfeI	CAATTG	3 cut(s)	1495, 1581, 1827
MflI	RGATCY	2 cut(s)	1979, 2002
MhlI	GDGCHC	1 cut(s)	1212
MlyI	GAGTC	1 cut(s)	1291
MmeI	TCCRAC	1 cut(s)	1489
Mph1103I	ATGCAT	1 cut(s)	1422
MroI	TCCGGA	1 cut(s)	2005
MseI	TTAA	8 cut(s)	278, 435, 471, 1146, 1340, 1533, 1593, 2053
MspA1I	CMGCKG	3 cut(s)	190, 584, 1937
MspI	CCGG	4 cut(s)	398, 488, 608, 2006
MspR9I	CCNGG	5 cut(s)	216, 399, 536, 609, 1529
MunI	CAATTG	3 cut(s)	1495, 1581, 1827
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	3 cut(s)	216, 536, 1529
MvnI	CGCG	1 cut(s)	1708
MwoI	GCNNNNNNNGC	4 cut(s)	116, 590, 731, 1238
NciI	CCSGG	2 cut(s)	399, 609
NdeI	CATATG	4 cut(s)	559, 826, 1217, 1234
NdeII	GATC	8 cut(s)	292, 544, 790, 1026, 1513, 1979, 2002, 2008
NlaIV	GGNNCC	4 cut(s)	12, 271, 983, 1640
NmuCI	GTSAC	3 cut(s)	1076, 1180, 1202
NsiI	ATGCAT	1 cut(s)	1422
NspI	RCATGY	2 cut(s)	568, 626
NspV	TTCGAA	1 cut(s)	142
PaeI	GCATGC	1 cut(s)	568
PaeR7I	CTCGAG	1 cut(s)	75
PagI	TCATGA	1 cut(s)	817
PaqCI	CACCTGC	1 cut(s)	1622
PciI	ACATGT	1 cut(s)	622
PctI	GAATGC	1 cut(s)	620
PfeI	GAWTC	7 cut(s)	91, 338, 926, 1559, 1699, 1805, 1883
PinAI	ACCGGT	1 cut(s)	487
PkrI	GCNGC	9 cut(s)	106, 109, 192, 1347, 1458, 1486, 1588, 1710, 1834
PleI	GAGTC	1 cut(s)	1291
PmaCI	CACGTG	1 cut(s)	1207
PmlI	CACGTG	1 cut(s)	1207
PpsI	GAGTC	1 cut(s)	1291
Ppu21I	YACGTR	1 cut(s)	1207
PpuMI	RGGWCCY	1 cut(s)	1283
PscI	ACATGT	1 cut(s)	622
PsiI	TTATAA	2 cut(s)	953, 1013
Psp5II	RGGWCCY	1 cut(s)	1283
Psp6I	CCWGG	3 cut(s)	214, 534, 1527
PspCI	CACGTG	1 cut(s)	1207
PspFI	CCCAGC	5 cut(s)	47, 193, 530, 988, 1436
PspGI	CCWGG	3 cut(s)	214, 534, 1527
PspN4I	GGNNCC	4 cut(s)	12, 271, 983, 1640
PspPI	GGNCC	5 cut(s)	270, 842, 967, 1283, 1639
PspPPI	RGGWCCY	1 cut(s)	1283
PspXI	VCTCGAGB	1 cut(s)	75
PsrI	GAACNNNNNNTAC	2 cut(s)	1594, 1626
PstI	CTGCAG	3 cut(s)	109, 1189, 1837
PstNI	CAGNNNCTG	3 cut(s)	104, 193, 1286
PsuI	RGATCY	2 cut(s)	1979, 2002
PvuII	CAGCTG	3 cut(s)	190, 584, 1937
RsaI	GTAC	2 cut(s)	1315, 2031
RsaNI	GTAC	2 cut(s)	1314, 2030
SaqAI	TTAA	8 cut(s)	278, 435, 471, 1146, 1340, 1533, 1593, 2053
SatI	GCNGC	9 cut(s)	105, 108, 191, 1346, 1457, 1485, 1587, 1709, 1833
Sau3AI	GATC	8 cut(s)	292, 544, 790, 1026, 1513, 1979, 2002, 2008
Sau96I	GGNCC	5 cut(s)	270, 842, 967, 1283, 1639
SchI	GAGTC	1 cut(s)	1291
ScrFI	CCNGG	5 cut(s)	216, 399, 536, 609, 1529
SduI	GDGCHC	1 cut(s)	1212
SfaNI	GCATC	3 cut(s)	1407, 1747, 1911
SfcI	CTRYAG	4 cut(s)	105, 1185, 1728, 1833
Sfr274I	CTCGAG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	142
SinI	GGWCC	3 cut(s)	270, 842, 1283
SlaI	CTCGAG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SphI	GCATGC	1 cut(s)	568
SsiI	CCGC	5 cut(s)	164, 1041, 1163, 1668, 1708
SspMI	CTAG	5 cut(s)	303, 326, 362, 768, 1974
StyD4I	CCNGG	5 cut(s)	214, 397, 534, 607, 1527
StyI	CCWWGG	2 cut(s)	475, 1090
TaaI	ACNGT	5 cut(s)	808, 913, 1009, 1202, 1622
TaiI	ACGT	1 cut(s)	1209
TaqI	TCGA	6 cut(s)	76, 142, 547, 1247, 1491, 1964
TatI	WGTACW	2 cut(s)	1313, 2029
TauI	GCSGC	1 cut(s)	1711
TfiI	GAWTC	7 cut(s)	91, 338, 926, 1559, 1699, 1805, 1883
Tru1I	TTAA	8 cut(s)	278, 435, 471, 1146, 1340, 1533, 1593, 2053
Tru9I	TTAA	8 cut(s)	278, 435, 471, 1146, 1340, 1533, 1593, 2053
TscAI	CASTG	3 cut(s)	811, 1405, 1627
TseFI	GTSAC	3 cut(s)	1076, 1180, 1202
TseI	GCWGC	8 cut(s)	104, 107, 190, 1345, 1456, 1484, 1586, 1832
Tsp45I	GTSAC	3 cut(s)	1076, 1180, 1202
TspGWI	ACGGA	2 cut(s)	327, 919
TspRI	CASTG	3 cut(s)	811, 1405, 1627
VneI	GTGCAC	1 cut(s)	1208
VpaK11BI	GGWCC	3 cut(s)	270, 842, 1283
XagI	CCTNNNNNAGG	1 cut(s)	1772
XapI	RAATTY	3 cut(s)	393, 740, 1372
XceI	RCATGY	2 cut(s)	568, 626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XhoI	CTCGAG	1 cut(s)	75
XspI	CTAG	5 cut(s)	303, 326, 362, 768, 1974
Zsp2I	ATGCAT	1 cut(s)	1422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.