Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Forward (+)

8735767 .. 8736003

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGACGAGGACCTTAAAGTCTCTAGAAGCGTTGGCGCGCTTAACGTCACTAGGCAGGTGCCATCTCGTCAAGCCATGGCGAAAATGCTGCAAGAGCGGTTGTTTTACATCCCGTCCTTCAAAATCTACGACGGCGCTGCGGAAACCGCTGGGCTTTTCGACTACGGGCCTCCCGGTGTCAAGCTGAAGAACAACGTTCTTGCATTTTGGCGTCAGGTGAAGTTTAAGGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

79

Amino Acids

8.87

Weight (kDa)

9.63

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	46
AasI	GACNNNNNNGTC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	58
AccBSI	CCGCTC	1 cut(s)	97
AccII	CGCG	1 cut(s)	38
AciI	CCGC	3 cut(s)	97, 140, 147
AclI	AACGTT	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	121
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	25
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	88, 137
AspLEI	GCGC	3 cut(s)	38, 40, 137
AspS9I	GGNCC	2 cut(s)	10, 167
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	75, 124
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	4 cut(s)	70, 104, 119, 153
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	24, 51
BfoI	RGCGCY	1 cut(s)	138
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	2 cut(s)	89, 138
BlsI	GCNGC	2 cut(s)	90, 139
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	10, 167
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	108
BsePI	GCGCGC	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	75, 124
BseYI	CCCAGC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	3 cut(s)	97, 140, 147
BspANI	GGCC	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	58
BsrBI	CCGCTC	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	75
BssHII	GCGCGC	1 cut(s)	36
BssNI	GRCGYC	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	3 cut(s)	38, 40, 137
BstMAI	GTCTC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 146
BstSCI	CCNGG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	75, 124
BsuRI	GGCC	1 cut(s)	169
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	38
CfoI	GCGC	3 cut(s)	38, 40, 137
Cfr13I	GGNCC	2 cut(s)	10, 167
CseI	GACGC	1 cut(s)	200
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	4 cut(s)	74, 154, 169, 184
CviKI_1	RGCY	4 cut(s)	74, 154, 169, 184
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	79
FaiI	YATR	1 cut(s)	77
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	89, 138
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	89, 138
FspBI	CTAG	2 cut(s)	24, 51
GlaI	GCGC	3 cut(s)	37, 39, 136
GluI	GCNGC	2 cut(s)	89, 138
GsaI	CCCAGC	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	3 cut(s)	38, 40, 137
Hin1I	GRCGYC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	3 cut(s)	36, 38, 135
HinP1I	GCGC	3 cut(s)	36, 38, 135
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	127
HpyCH4IV	ACGT	2 cut(s)	45, 195
HpyCH4V	TGCA	2 cut(s)	91, 203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 146
HpySE526I	ACGT	2 cut(s)	45, 195
Hsp92I	GRCGYC	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	3 cut(s)	36, 38, 135
LpnPI	CCDG	4 cut(s)	41, 135, 187, 200
Lsp1109I	GCAGC	2 cut(s)	75, 124
MaeI	CTAG	2 cut(s)	24, 51
MaeII	ACGT	2 cut(s)	45, 195
MaeIII	GTNAC	1 cut(s)	46
MbiI	CCGCTC	1 cut(s)	97
MboII	GAAGA	1 cut(s)	199
MnlI	CCTC	1 cut(s)	180
MseI	TTAA	3 cut(s)	15, 42, 225
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	94, 146
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	75
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	46
PaqCI	CACCTGC	1 cut(s)	46
PauI	GCGCGC	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	90, 139
PpuMI	RGGWCCY	1 cut(s)	10
Psp1406I	AACGTT	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	2 cut(s)	10, 167
PspPPI	RGGWCCY	1 cut(s)	10
PteI	GCGCGC	1 cut(s)	36
SaqAI	TTAA	3 cut(s)	15, 42, 225
SatI	GCNGC	2 cut(s)	89, 138
Sau96I	GGNCC	2 cut(s)	10, 167
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	6 cut(s)	15, 48, 60, 186, 198, 219
SinI	GGWCC	1 cut(s)	10
SsiI	CCGC	3 cut(s)	97, 140, 147
SspMI	CTAG	2 cut(s)	24, 51
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	2 cut(s)	48, 198
TaqI	TCGA	1 cut(s)	159
Tru1I	TTAA	3 cut(s)	15, 42, 225
Tru9I	TTAA	3 cut(s)	15, 42, 225
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	88, 137
Tsp45I	GTSAC	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	10
XbaI	TCTAGA	1 cut(s)	23
XspI	CTAG	2 cut(s)	24, 51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.