pycom13g17170

Belongs to the eukaryotic ribosomal protein eS1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0003036
Physical Location & Seq
Reverse (-)
12908028 .. 12910163
2136 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 660 bp
ATGGGCAGGAAAGTGTTAGGGTTTTGTGCTTCACAAGGACAAGGGTTTGCTCTCTCGGCCGCTTTTAGCCTCACCCTTCATCTCTCTGCAGAGCTCTCGAGCTCCTCCAAATTTTCAGCCATGGCCGTCGGCAAGAACAAGAGGATTTCCAAGTCGAAGAAAGGAGGAAAGAAGAAAGCGGTTGATCCGTTTGCCAAGAAGGATTGGTATGACATCAAGGCCCCGAAACTGTTCAACAACACGAATGTGGGCAAAACTCTTGTCTCCCGTACTCAGGGTACCAAGATTGCTTCCGAAGGACTCAAGCATAGAGTCTTTGAGGTATCACTCGCTGACCTTCAGGGTGATGAGGAGCATGCTTACCGAAAGATGCGGTTGAGAGCTGAAGATGTCCAAGGGAAGACTGTTCTTACTAATTTCTGGGGAATGAACTTCACCACTGACAAGCTTAGGTCTTTGGTGCGCAAATGGCAAACCTTGATTGAAGCTCATGTGGATGTGAAGACCACCGACAACTATACTCTAAGGATGTTCTGCATTGGCTTCACCAAGAGACGTCCAAATCAGGTCAAGAGGACTTGCTATGCACAGTCTAGCCAAGTCAGACAGATTCGCCGTAAGATGAGTGAGATCGATGATTGCCCAGGCAACATCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S3Ae

Protein Analysis

220

Amino Acids

24.72

Weight (kDa)

10.18

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S3Ae PF01015 56 - 211 3.4e-61 Ribosomal S3Ae family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 559
Acc16I TGCGCA 1 cut(s) 464
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 3 cut(s) 60, 179, 373
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 2 cut(s) 57, 123
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 2 cut(s) 323, 405
AcyI GRCGYC 1 cut(s) 556
AfaI GTAC 2 cut(s) 271, 280
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 2 cut(s) 235, 485
AjnI CCWGG 1 cut(s) 643
AleI CACNNNNGTG 1 cut(s) 245
AluBI AGCT 5 cut(s) 94, 102, 383, 448, 488
AluI AGCT 5 cut(s) 94, 102, 383, 448, 488
Alw21I GWGCWC 2 cut(s) 96, 104
Alw26I GTCTC 2 cut(s) 268, 547
AlwI GGATC 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 3 cut(s) 57, 123, 219
ApoI RAATTY 1 cut(s) 110
ArsI GACNNNNNNTTYG 2 cut(s) 246, 278
Asp700I GAANNNNTTC 1 cut(s) 230
Asp718I GGTACC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 4 cut(s) 64, 356, 427, 538
AvaI CYCGRG 1 cut(s) 97
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 2 cut(s) 96, 104
BbsI GAAGAC 2 cut(s) 407, 509
Bbv12I GWGCWC 2 cut(s) 96, 104
BceAI ACGGC 2 cut(s) 110, 600
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 1 cut(s) 645
BcoDI GTCTC 2 cut(s) 268, 547
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 645
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 2 cut(s) 222, 280
BmrFI CCNGG 1 cut(s) 645
BmsI GCATC 1 cut(s) 360
BpiI GAAGAC 2 cut(s) 407, 509
Bpu10I CCTNAGC 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 633
BsaHI GRCGYC 1 cut(s) 556
BsaJI CCNNGG 3 cut(s) 120, 394, 643
Bsc4I CCNNNNNNNGG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 645
BseCI ATCGAT 1 cut(s) 633
BseDI CCNNGG 3 cut(s) 120, 394, 643
BseGI GGATG 2 cut(s) 502, 534
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 287
BseRI GAGGAG 2 cut(s) 94, 365
BseX3I CGGCCG 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 59, 125, 221
BshNI GGYRCC 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 633
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 96, 104
BsiHKCI CYCGRG 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 2 cut(s) 268, 547
BsmBI CGTCTC 1 cut(s) 547
BsnI GGCC 3 cut(s) 59, 125, 221
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 96, 104
Bsp143I GATC 2 cut(s) 184, 630
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 3 cut(s) 60, 179, 373
BspANI GGCC 3 cut(s) 59, 125, 221
BspCNI CTCAG 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 633
BspLI GGNNCC 2 cut(s) 222, 280
BspMAI CTGCAG 1 cut(s) 91
BspPI GGATC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 278
BssECI CCNNGG 3 cut(s) 120, 394, 643
BssMI GATC 2 cut(s) 184, 630
BssNI GRCGYC 1 cut(s) 556
BssT1I CCWWGG 2 cut(s) 120, 394
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 3 cut(s) 231, 406, 591
BstACI GRCGYC 1 cut(s) 556
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 3 cut(s) 273, 449, 524
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 2 cut(s) 502, 534
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 2 cut(s) 187, 633
BstMAI GTCTC 2 cut(s) 268, 547
BstMBI GATC 2 cut(s) 184, 630
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 56, 469
BstNI CCWGG 1 cut(s) 645
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 643
BstSFI CTRYAG 1 cut(s) 87
BstV2I GAAGAC 2 cut(s) 407, 509
BstZI CGGCCG 1 cut(s) 57
Bsu15I ATCGAT 1 cut(s) 633
BsuRI GGCC 3 cut(s) 59, 125, 221
BsuTUI ATCGAT 1 cut(s) 633
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 2 cut(s) 502, 534
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 357
CfoI GCGC 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 220
ClaI ATCGAT 1 cut(s) 633
Csp6I GTAC 2 cut(s) 270, 279
CviAII CATG 3 cut(s) 121, 356, 491
CviQI GTAC 2 cut(s) 270, 279
DdeI CTNAG 3 cut(s) 273, 449, 524
DpnI GATC 2 cut(s) 186, 632
DpnII GATC 2 cut(s) 184, 630
EaeI YGGCCR 2 cut(s) 57, 123
EagI CGGCCG 1 cut(s) 57
Ecl136II GAGCTC 2 cut(s) 94, 102
EclXI CGGCCG 1 cut(s) 57
Eco130I CCWWGG 2 cut(s) 120, 394
Eco24I GRGCYC 2 cut(s) 96, 104
Eco52I CGGCCG 1 cut(s) 57
Eco53kI GAGCTC 2 cut(s) 94, 102
Eco57I CTGAAG 2 cut(s) 323, 405
Eco88I CYCGRG 1 cut(s) 97
EcoICRI GAGCTC 2 cut(s) 94, 102
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 643
EcoT14I CCWWGG 2 cut(s) 120, 394
EcoT38I GRGCYC 2 cut(s) 96, 104
ErhI CCWWGG 2 cut(s) 120, 394
Esp3I CGTCTC 1 cut(s) 547
FaeI CATG 3 cut(s) 124, 359, 494
FaiI YATR 7 cut(s) 122, 210, 309, 357, 492, 519, 585
FatI CATG 3 cut(s) 120, 355, 490
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 2 cut(s) 509, 541
FriOI GRGCYC 2 cut(s) 96, 104
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 594
FspI TGCGCA 1 cut(s) 464
GlaI GCGC 1 cut(s) 464
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 3 cut(s) 59, 125, 221
HhaI GCGC 1 cut(s) 465
Hin1I GRCGYC 1 cut(s) 556
Hin1II CATG 3 cut(s) 124, 359, 494
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 3 cut(s) 300, 312, 610
HphI GGTGA 4 cut(s) 64, 356, 427, 538
Hpy188I TCNGA 2 cut(s) 295, 605
Hpy188III TCNNGA 2 cut(s) 97, 571
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 4 cut(s) 86, 193, 290, 347
HpyCH4III ACNGT 3 cut(s) 231, 406, 591
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 3 cut(s) 89, 537, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 469
HpyF3I CTNAG 3 cut(s) 273, 449, 524
HpySE526I ACGT 1 cut(s) 556
Hsp92I GRCGYC 1 cut(s) 556
Hsp92II CATG 3 cut(s) 124, 359, 494
HspAI GCGC 1 cut(s) 463
KpnI GGTACC 1 cut(s) 282
Kzo9I GATC 2 cut(s) 184, 630
LmnI GCTCC 2 cut(s) 107, 352
LpnPI CCDG 5 cut(s) 260, 326, 406, 551, 630
LweI GCATC 1 cut(s) 360
MaeI CTAG 1 cut(s) 594
MaeII ACGT 1 cut(s) 556
MalI GATC 2 cut(s) 186, 632
MboI GATC 2 cut(s) 184, 630
MboII GAAGA 5 cut(s) 169, 184, 398, 412, 514
MhlI GDGCHC 2 cut(s) 96, 104
MluCI AATT 2 cut(s) 110, 415
MlyI GAGTC 2 cut(s) 294, 321
MnlI CCTC 7 cut(s) 80, 115, 135, 158, 313, 343, 567
MroXI GAANNNNTTC 1 cut(s) 230
MslI CAYNNNNRTG 2 cut(s) 245, 495
MspR9I CCNGG 1 cut(s) 645
MvaI CCWGG 1 cut(s) 645
MwoI GCNNNNNNNGC 2 cut(s) 56, 469
NcoI CCATGG 1 cut(s) 120
NdeII GATC 2 cut(s) 184, 630
NlaIII CATG 3 cut(s) 124, 359, 494
NlaIV GGNNCC 2 cut(s) 222, 280
NmeAIII GCCGAG 1 cut(s) 35
NsbI TGCGCA 1 cut(s) 464
NspI RCATGY 1 cut(s) 359
OliI CACNNNNGTG 1 cut(s) 245
PaeI GCATGC 1 cut(s) 359
PaeR7I CTCGAG 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 610
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 2 cut(s) 294, 320
PpsI GAGTC 2 cut(s) 294, 320
Psp124BI GAGCTC 2 cut(s) 96, 104
Psp6I CCWGG 1 cut(s) 643
PspGI CCWGG 1 cut(s) 643
PspN4I GGNNCC 2 cut(s) 222, 280
PspPI GGNCC 1 cut(s) 220
PstI CTGCAG 1 cut(s) 91
RsaI GTAC 2 cut(s) 271, 280
RsaNI GTAC 2 cut(s) 270, 279
RseI CAYNNNNRTG 2 cut(s) 245, 495
SacI GAGCTC 2 cut(s) 96, 104
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 184, 630
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 2 cut(s) 294, 321
ScrFI CCNGG 1 cut(s) 645
SduI GDGCHC 2 cut(s) 96, 104
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 87
Sfr274I CTCGAG 1 cut(s) 97
SlaI CTCGAG 1 cut(s) 97
SmiMI CAYNNNNRTG 2 cut(s) 245, 495
SmlI CTYRAG 2 cut(s) 97, 302
SmoI CTYRAG 2 cut(s) 97, 302
SphI GCATGC 1 cut(s) 359
Sse9I AATT 2 cut(s) 110, 415
SsiI CCGC 3 cut(s) 60, 179, 373
SspMI CTAG 1 cut(s) 594
SstI GAGCTC 2 cut(s) 96, 104
StyD4I CCNGG 1 cut(s) 643
StyI CCWWGG 2 cut(s) 120, 394
TaaI ACNGT 3 cut(s) 231, 406, 591
TaiI ACGT 1 cut(s) 559
TaqI TCGA 3 cut(s) 98, 155, 633
TasI AATT 2 cut(s) 110, 415
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 610
TscAI CASTG 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 68, 443
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 1 cut(s) 445
XapI RAATTY 1 cut(s) 110
XceI RCATGY 1 cut(s) 359
XhoI CTCGAG 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 1 cut(s) 594
ZraI GACGTC 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.