Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005549

Physical Location & Seq

Genomic Coordinates Reverse (-)

17510095 .. 17512088

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATACTCTTGGAGCTCTAGCATTGGCTACGGAGCCACCTACAGATCACTTGATGGACAGAACCCCTGTTGGTCGAAGAGAGCCGCTCATAACAAATATAATGTGGAGGAACTTGTTGGTTCAGGCTTTCTACCAAGTCACTGTCCTACTTGTCTTCAACTTCCGAGGAATAAGTATACTGAAGCTGCATGGTCCCAATGCTACCACTGTGAAGAATACTCTGATATTCAATACATTTGTCCTATGTCAAATTTTCAATGAATTCAATGCTCGAAAGCCCGATGAGTTCAATATATTCCAAGGGATAACCAAGAACTTACTTTTTATGGGAATAGTAGGAGTAACTCTCGTACTTCAGATTATCATCGTCGAGTTCCTTGGGAAGTTCACTAAAACAAAACCCCTTACTTGGGATCTTTGGCTGATTTCAGCTGTAATAGCTTTTATCAGTTGGCCTCTCGCTGTTGTTGGGAAACTGATTCCAGTTCCAGAAACTCCGTTATTCAAGTATTTCACAAGAATGATCCCTTGGCGAAGAAACAATTCAGAGGTTAGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

188

Amino Acids

21.39

Weight (kDa)

9.77

Isoelectric Point (pI)

23.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	1 - 161	9.8e-36	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005549)

Species	Orthologous Gene IDs
malus_domestica	MD12G1081700.v1.1
pyrus_communis	pycom12g06770 pycom13g21210 pycom14g06540 pycom14g06560 pycom16g20650
rosa_chinensis	RchiOBHm_Chr3g0483401 RchiOBHm_Chr6g0264021
rosa_laevigata	RLG00000023286
rosa_multiflora	Rmu_sc0006349.1_g000007 Rmu_sc0007793.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031200 Rroxscaffold_4G00300190 Rroxscaffold_4G00318650 Rroxscaffold_6G00398380
rosa_rugosa	Rorug03G0205700 Rorug03G0205800
rosa_samantha	Rh1DG033100 Rh2AG476200 Rh3AG254200 Rh3BG291300 Rh3CG288500 Rh3CG288600 Rh3DG284300 Rh3DG284400
rosa_wichuraiana	Rw0G023730 Rw3G022950 Rw3G022970 Rw6G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	178
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	2 cut(s)	423, 520
AcsI	RAATTY	2 cut(s)	252, 263
AcuI	CTGAAG	2 cut(s)	203, 341
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	2 cut(s)	411, 412
AgsI	TTSAA	6 cut(s)	160, 232, 259, 268, 292, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AluBI	AGCT	4 cut(s)	17, 187, 434, 443
AluI	AGCT	4 cut(s)	17, 187, 434, 443
Alw21I	GWGCWC	1 cut(s)	19
AlwI	GGATC	2 cut(s)	423, 520
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	2 cut(s)	252, 263
Asp700I	GAANNNNTTC	1 cut(s)	544
AspS9I	GGNCC	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	2 cut(s)	86, 188
BlsI	GCNGC	2 cut(s)	87, 189
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	36, 196
BpiI	GAAGAC	1 cut(s)	148
BplI	GAGNNNNNCTC	4 cut(s)	72, 104, 333, 365
BsaBI	GATNNNNATC	1 cut(s)	365
BsaJI	CCNNGG	4 cut(s)	166, 301, 379, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	411, 412
Bse1I	ACTGG	1 cut(s)	485
Bse8I	GATNNNNATC	1 cut(s)	365
BseDI	CCNNGG	4 cut(s)	166, 301, 379, 530
BseJI	GATNNNNATC	1 cut(s)	365
BseLI	CCNNNNNNNGG	2 cut(s)	411, 412
BseNI	ACTGG	1 cut(s)	485
BseXI	GCAGC	1 cut(s)	174
BshFI	GGCC	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	411, 412
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	46, 415, 525
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	36, 196
BspPI	GGATC	2 cut(s)	423, 520
BsrBI	CCGCTC	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	4 cut(s)	166, 301, 379, 530
BssMI	GATC	3 cut(s)	46, 415, 525
BssNAI	GTATAC	1 cut(s)	179
BssT1I	CCWWGG	3 cut(s)	301, 379, 530
Bst1107I	GTATAC	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	145, 211
Bst6I	CTCTTC	1 cut(s)	73
BstKTI	GATC	3 cut(s)	49, 418, 528
BstMBI	GATC	3 cut(s)	46, 415, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BstZ17I	GTATAC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	141, 207
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	1 cut(s)	191
CviQI	GTAC	1 cut(s)	353
DpnI	GATC	3 cut(s)	48, 417, 527
DpnII	GATC	3 cut(s)	46, 415, 525
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	3 cut(s)	301, 379, 530
Eco24I	GRGCYC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	2 cut(s)	203, 341
EcoICRI	GAGCTC	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	263
EcoT14I	CCWWGG	3 cut(s)	301, 379, 530
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	3 cut(s)	301, 379, 530
FaeI	CATG	1 cut(s)	194
FaiI	YATR	7 cut(s)	92, 101, 179, 192, 247, 296, 329
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	2 cut(s)	86, 188
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	2 cut(s)	86, 188
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	2 cut(s)	86, 188
HaeIII	GGCC	1 cut(s)	457
Hin1II	CATG	1 cut(s)	194
HinfI	GANTC	1 cut(s)	481
Hpy166II	GTNNAC	2 cut(s)	179, 390
Hpy188I	TCNGA	4 cut(s)	167, 225, 360, 550
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	2 cut(s)	179, 390
Hpy99I	CGWCG	1 cut(s)	374
HpyCH4III	ACNGT	2 cut(s)	145, 211
HpyCH4V	TGCA	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
Hsp92II	CATG	1 cut(s)	194
Kzo9I	GATC	3 cut(s)	46, 415, 525
LmnI	GCTCC	2 cut(s)	14, 34
LpnPI	CCDG	4 cut(s)	81, 110, 498, 504
Lsp1109I	GCAGC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	139, 343
MalI	GATC	3 cut(s)	48, 417, 527
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	3 cut(s)	46, 415, 525
MboII	GAAGA	4 cut(s)	90, 148, 226, 549
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	3 cut(s)	252, 263, 544
MnlI	CCTC	4 cut(s)	102, 161, 468, 544
MroXI	GAANNNNTTC	1 cut(s)	544
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	440
NdeII	GATC	3 cut(s)	46, 415, 525
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	2 cut(s)	36, 196
NmuCI	GTSAC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	2 cut(s)	87, 189
Psp124BI	GAGCTC	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	36, 196
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	521
SacI	GAGCTC	1 cut(s)	19
SatI	GCNGC	2 cut(s)	86, 188
Sau3AI	GATC	3 cut(s)	46, 415, 525
Sau96I	GGNCC	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	6 cut(s)	19, 43, 189, 436, 445, 555
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	521
Sse9I	AATT	3 cut(s)	252, 263, 544
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	20
SstI	GAGCTC	1 cut(s)	19
StyI	CCWWGG	3 cut(s)	301, 379, 530
TaaI	ACNGT	2 cut(s)	145, 211
TaqI	TCGA	3 cut(s)	76, 274, 372
TasI	AATT	3 cut(s)	252, 263, 544
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	481
TscAI	CASTG	2 cut(s)	148, 214
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	2 cut(s)	47, 489
TspRI	CASTG	2 cut(s)	148, 214
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	2 cut(s)	252, 263
XmiI	GTMKAC	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	544
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.