pycom14g09510

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0002320
Physical Location & Seq
Reverse (-)
11458389 .. 11459765
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 594 bp
ATGGACAGGACAATGCTGGTGCCGCCATGGCTGGAGCAGTTGCTCAACACATCATTCTTCAGAGTCTGCCGTACACATGGAGACGCCGCCAGAAGTGAGTGCAACATGTTCTGCTTAGATTGCAGTGGAGACGCTTTCTGCTTTTATTGCAGGTCCTCCGGACACAAAGATCACCAAGTCATTCAGATAAGGAGATCTTCATACCATGATGTGGTGAGGGTTTCAGAGGTGCAGAAGGCATTAGACATAAACGGAGTTCAGACATACGTGATAAACAGCGCCAGAGTTATGTTTCTGAATGAGAGGCCTCAGCCGAAGGCTGGCAGTAAGGGATCTCCCCATATTTGTGAACTCTGTGGCAGAAGCCTCTTGGATCCTGTTCGTTTCTGCTCACTCGGCTGTAAGCTTGCGGGAATAAATAGAAATGGGGATGCAAACTTTACCTTAGAGGCGAAGGATGAGGAGGCAATGGGGAGGAGAGAAGAGTTGCGTGAAGGCTCACAACAAGACATATGCCCGCCCACGCCGCCTCCACCTCCTTCCACAGCAAGAAGAAGAAAAGGCATTCCTCATAGGGCACCCTTTGGCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

198

Amino Acids

22.07

Weight (kDa)

8.68

Isoelectric Point (pI)

63.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 64 - 136 6.3e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 141
AccB1I GGYRCC 2 cut(s) 19, 577
AccB7I CCANNNNNTGG 1 cut(s) 211
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 5 cut(s) 23, 87, 410, 518, 527
AclWI GGATC 3 cut(s) 340, 368, 381
AcuI CTGAAG 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 211, 320
AflIII ACRYGT 1 cut(s) 105
AluBI AGCT 1 cut(s) 406
AluI AGCT 1 cut(s) 406
Alw26I GTCTC 2 cut(s) 75, 123
AlwI GGATC 3 cut(s) 340, 368, 381
AlwNI CAGNNNCTG 1 cut(s) 66
Aor13HI TCCGGA 1 cut(s) 158
AoxI GGCC 1 cut(s) 305
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 164, 226
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 580
BamHI GGATCC 1 cut(s) 373
BanI GGYRCC 2 cut(s) 19, 577
BbvCI CCTCAGC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 75, 123
BfoI RGCGCY 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 194
BisI GCNGC 3 cut(s) 23, 87, 527
BlsI GCNGC 3 cut(s) 24, 88, 528
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 4 cut(s) 21, 375, 579, 589
BmsI GCATC 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 309
BsaAI YACGTR 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 320
Bse3DI GCAATG 1 cut(s) 474
BseAI TCCGGA 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 436, 463
BseLI CCNNNNNNNGG 2 cut(s) 211, 320
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 323
BseRI GAGGAG 2 cut(s) 476, 490
BseSI GKGCMC 1 cut(s) 580
BsgI GTGCAG 1 cut(s) 251
BshFI GGCC 1 cut(s) 307
BshNI GGYRCC 2 cut(s) 19, 577
BsiSI CCGG 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 211, 320
BsmAI GTCTC 2 cut(s) 75, 123
BsmBI CGTCTC 2 cut(s) 75, 123
BsmI GAATGC 1 cut(s) 564
BsnI GGCC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 580
Bsp13I TCCGGA 1 cut(s) 158
Bsp143I GATC 4 cut(s) 169, 194, 332, 373
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 5 cut(s) 23, 87, 410, 518, 527
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 1 cut(s) 322
BspEI TCCGGA 1 cut(s) 158
BspLI GGNNCC 4 cut(s) 21, 375, 579, 589
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 3 cut(s) 340, 368, 381
BspT107I GGYRCC 2 cut(s) 19, 577
BsrDI GCAATG 1 cut(s) 474
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 4 cut(s) 169, 194, 332, 373
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 477
BstACI GRCGYC 1 cut(s) 84
BstBAI YACGTR 1 cut(s) 268
BstC8I GCNNGC 3 cut(s) 322, 408, 518
BstDEI CTNAG 3 cut(s) 115, 309, 445
BstDSI CCRYGG 1 cut(s) 26
BstF5I GGATG 2 cut(s) 436, 463
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 4 cut(s) 172, 197, 335, 376
BstMAI GTCTC 2 cut(s) 75, 123
BstMBI GATC 4 cut(s) 169, 194, 332, 373
BstMWI GCNNNNNNNGC 6 cut(s) 22, 28, 120, 147, 396, 526
BstNSI RCATGY 1 cut(s) 109
BstSLI GKGCMC 1 cut(s) 580
BstX2I RGATCY 3 cut(s) 194, 332, 373
BstYI RGATCY 3 cut(s) 194, 332, 373
BsuRI GGCC 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 26
BtsCI GGATG 2 cut(s) 436, 463
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 3 cut(s) 322, 408, 518
CaiI CAGNNNCTG 1 cut(s) 66
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 153
CseI GACGC 2 cut(s) 92, 140
Csp6I GTAC 1 cut(s) 72
CviAII CATG 4 cut(s) 27, 77, 106, 206
CviJI RGCY 9 cut(s) 31, 307, 313, 320, 366, 399, 406, 498, 588
CviKI_1 RGCY 9 cut(s) 31, 307, 313, 320, 366, 399, 406, 498, 588
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 3 cut(s) 115, 309, 445
DpnI GATC 4 cut(s) 171, 196, 334, 375
DpnII GATC 4 cut(s) 169, 194, 332, 373
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 26
Eco147I AGGCCT 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
Esp3I CGTCTC 2 cut(s) 75, 123
FaeI CATG 4 cut(s) 30, 80, 109, 209
FalI AAGNNNNNCTT 2 cut(s) 181, 213
FatI CATG 4 cut(s) 26, 76, 105, 205
FauI CCCGC 2 cut(s) 403, 525
FauNDI CATATG 1 cut(s) 512
Fnu4HI GCNGC 3 cut(s) 23, 87, 527
FokI GGATG 2 cut(s) 443, 470
Fsp4HI GCNGC 3 cut(s) 23, 87, 527
GlaI GCGC 1 cut(s) 280
GluI GCNGC 3 cut(s) 23, 87, 527
GsuI CTGGAG 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 1 cut(s) 307
HapII CCGG 1 cut(s) 159
HgaI GACGC 2 cut(s) 92, 140
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 4 cut(s) 30, 80, 109, 209
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 1 cut(s) 63
HpaII CCGG 1 cut(s) 159
HphI GGTGA 2 cut(s) 164, 226
Hpy166II GTNNAC 2 cut(s) 74, 350
Hpy188I TCNGA 5 cut(s) 62, 186, 226, 261, 297
Hpy188III TCNNGA 1 cut(s) 159
Hpy8I GTNNAC 2 cut(s) 74, 350
HpyAV CCTTC 5 cut(s) 229, 310, 448, 488, 549
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 5 cut(s) 102, 123, 150, 232, 434
HpyF10VI GCNNNNNNNGC 6 cut(s) 22, 28, 120, 147, 396, 526
HpyF3I CTNAG 3 cut(s) 115, 309, 445
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 4 cut(s) 30, 80, 109, 209
HspAI GCGC 1 cut(s) 279
Kpn2I TCCGGA 1 cut(s) 158
Kzo9I GATC 4 cut(s) 169, 194, 332, 373
LmnI GCTCC 2 cut(s) 34, 593
LpnPI CCDG 8 cut(s) 2, 17, 103, 136, 172, 295, 306, 390
LweI GCATC 1 cut(s) 421
MaeII ACGT 1 cut(s) 267
MalI GATC 4 cut(s) 171, 196, 334, 375
MboI GATC 4 cut(s) 169, 194, 332, 373
MboII GAAGA 5 cut(s) 49, 189, 494, 564, 567
MflI RGATCY 3 cut(s) 194, 332, 373
MhlI GDGCHC 1 cut(s) 580
MlyI GAGTC 1 cut(s) 72
MroI TCCGGA 1 cut(s) 158
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 564
MwoI GCNNNNNNNGC 6 cut(s) 22, 28, 120, 147, 396, 526
NcoI CCATGG 1 cut(s) 26
NdeI CATATG 1 cut(s) 512
NdeII GATC 4 cut(s) 169, 194, 332, 373
NlaIII CATG 4 cut(s) 30, 80, 109, 209
NlaIV GGNNCC 4 cut(s) 21, 375, 579, 589
NmeAIII GCCGAG 1 cut(s) 375
NspI RCATGY 1 cut(s) 109
PceI AGGCCT 1 cut(s) 307
PciI ACATGT 1 cut(s) 105
PctI GAATGC 1 cut(s) 564
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 3 cut(s) 24, 88, 528
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Ppu21I YACGTR 1 cut(s) 268
PpuMI RGGWCCY 1 cut(s) 153
PscI ACATGT 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 153
PspN4I GGNNCC 4 cut(s) 21, 375, 579, 589
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 66
PsuI RGATCY 3 cut(s) 194, 332, 373
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 345
SatI GCNGC 3 cut(s) 23, 87, 527
Sau3AI GATC 4 cut(s) 169, 194, 332, 373
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 1 cut(s) 72
SduI GDGCHC 1 cut(s) 580
SetI ASST 6 cut(s) 155, 231, 270, 408, 446, 538
SfaNI GCATC 1 cut(s) 421
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 345
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 5 cut(s) 23, 87, 410, 518, 527
StuI AGGCCT 1 cut(s) 307
StyI CCWWGG 1 cut(s) 26
TaiI ACGT 1 cut(s) 270
TauI GCSGC 3 cut(s) 25, 89, 529
TscAI CASTG 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 130
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.