Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

14647088 .. 14649851

Gene Structure 2764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGACAAGAACGTCATCAGAAAGGCCTTTTAAAGAAACAAACAAGGAATGCAAATCATCGCCAATTGGACAGAGGAACCTTCTCCACACCCAAAGTTGGGATTCTAAGCCCATTATATATATGGGATGCCTATGTATCAAGTTCCAAGCATCGACCTTTCCCTTCTGGGCAATACCGCATTCAAAAGTTCTTATTGCCTTTCAGATGGAAGCTCAAAATTCTGGGTATTCGCATATTGTTGAAGTAGGTGGAGATGTGCCAGCTACAGATACGAGCTTGTGTGGGACAAAGATTTGTGGGGATGCACCGTGCGGATTTTCTGATGCTAAAACTAGTTCCAAAGACGCACAGGAACGGTCAGCATCCATGCGGAAGCTTTTGATAGCGGTTGTCCTCTGTGTCATTTTCATGAGTGTGGAGGTTGTTGGGGGTATCAAAGCCAACAGTCTTGCGATTCTCACTGATGCGGCTCATTTGTTGTCAGATGTTGCCGCATTTGCAATTTCTTTGTTCTCACTTTGGGCATCAGGATGGGAGGCAACTCCTCGTCAGTCGTATGGCTTCTTCCGGATTGAAATACTAGGTGCTCTTGTTTCCATTCAGATGATTTGGCTGCTTGCTGGGATCCTTGTTTATGAAGCCATTGCAAGACTTATCCATGACACTGGTGAAGTTGAGGGCTTTCTCATGTTTCTTGTTTCTGCGTTTGGTTTACTGGTTAATATCGCCATGGCACTCTTATTGGGTCATGATCATGGGCACGATCACGGACATGGACATGGACATGGCCATGGTGGGCATGGTCATGGACATGGTGATCATAATCATAGTCATGAGGATCATGATGAGACCCATAACCATGGGATTACTGTGACAACACATCACTCTCATCATCATGAGGCGCACTCGAATCATGAAGACAAGCACCATCATACCGATGTAATTAACATCACAGAACCTCTGCTCAATCATAGCGCTGAAGGTGAAAAGAAACCAGAAGGTAAAAAGAAGAAGCAACGAAACATCAATGTGCAGGGGGCTTATCTTCATGTACTTGGCGATTCCATTCAGAGTATTGGAGTGATGATTGGTGGAGGGCTTATCTGGTACAAGCCAGAGTGGAAGATTATTGATCTGATATGTACTCTTGTATTTTCAATAATCGTGCTGGCGACAACAATCCGGATGTTGAGGAACATTTTGGAGGTTTTGATGGAGAGCACTCCCAGAGAGATTGATGCCACAAAGATTGAGAAAGGTCTCTGCGAGATGGATGAGGTAGTTGCCATTCACGAGCTGCACATATGGGCGATAACTGTTGGGAAGGTGTTAATGGCTTGTCATGTTATCGTTAAGCCGGATGCTAATGCCGATGTGGTGCTGGAAAAGGTTGTAGACTACATCAAGAGAGAATATAATATCAGTCATGTAACGATTCAGATAGAACGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

485

Amino Acids

53.48

Weight (kDa)

6.24

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	126 - 405	3.8e-44	Cation efflux transmembrane domain
ZT_dimer	PF16916	409 - 483	1.7e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	1395
AccIII	TCCGGA	2 cut(s)	567, 1182
AciI	CCGC	6 cut(s)	176, 312, 370, 386, 467, 492
AclWI	GGATC	3 cut(s)	619, 632, 846
AcoI	YGGCCR	1 cut(s)	787
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	999
AfaI	GTAC	3 cut(s)	1053, 1109, 1144
AfeI	AGCGCT	1 cut(s)	976
AfiI	CCNNNNNNNGG	2 cut(s)	96, 97
AgsI	TTSAA	4 cut(s)	183, 242, 575, 1158
AhlI	ACTAGT	1 cut(s)	332
AluBI	AGCT	5 cut(s)	212, 263, 276, 376, 1297
AluI	AGCT	5 cut(s)	212, 263, 276, 376, 1297
Alw21I	GWGCWC	2 cut(s)	589, 1223
Alw26I	GTCTC	2 cut(s)	842, 1265
AlwI	GGATC	3 cut(s)	619, 632, 846
Aor13HI	TCCGGA	2 cut(s)	567, 1182
Aor51HI	AGCGCT	1 cut(s)	976
AoxI	GGCC	2 cut(s)	23, 787
ApeKI	GCWGC	2 cut(s)	613, 1297
ApoI	RAATTY	1 cut(s)	217
AspLEI	GCGC	2 cut(s)	904, 977
AsuHPI	GGTGA	3 cut(s)	680, 827, 995
BaeGI	GKGCMC	1 cut(s)	762
BalI	TGGCCA	1 cut(s)	789
BamHI	GGATCC	1 cut(s)	624
BarI	GAAGNNNNNNTAC	2 cut(s)	548, 580
BauI	CACGAG	1 cut(s)	1292
BbsI	GAAGAC	1 cut(s)	924
Bbv12I	GWGCWC	2 cut(s)	589, 1223
BbvI	GCAGC	2 cut(s)	600, 1284
BccI	CCATC	5 cut(s)	199, 525, 936, 1207, 1264
BclI	TGATCA	2 cut(s)	751, 817
BcoDI	GTCTC	2 cut(s)	842, 1265
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	2 cut(s)	333, 581
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	978
BisI	GCNGC	4 cut(s)	468, 492, 614, 1298
BlsI	GCNGC	4 cut(s)	469, 493, 615, 1299
BmiI	GGNNCC	2 cut(s)	77, 626
BmsI	GCATC	9 cut(s)	116, 158, 292, 313, 371, 454, 533, 1228, 1351
BpiI	GAAGAC	1 cut(s)	924
BplI	GAGNNNNNCTC	2 cut(s)	890, 922
BsaBI	GATNNNNATC	1 cut(s)	822
BsaI	GGTCTC	2 cut(s)	842, 1265
BsaJI	CCNNGG	3 cut(s)	729, 790, 859
BsaWI	WCCGGW	2 cut(s)	567, 1182
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 97
Bse1I	ACTGG	2 cut(s)	670, 720
Bse3DI	GCAATG	1 cut(s)	642
Bse8I	GATNNNNATC	1 cut(s)	822
BseAI	TCCGGA	2 cut(s)	567, 1182
BseDI	CCNNGG	3 cut(s)	729, 790, 859
BseGI	GGATG	7 cut(s)	131, 307, 362, 536, 1191, 1279, 1366
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	2 cut(s)	96, 97
BseMI	GCAATG	1 cut(s)	642
BseNI	ACTGG	2 cut(s)	670, 720
BseRI	GAGGAG	1 cut(s)	534
BseSI	GKGCMC	1 cut(s)	762
BseXI	GCAGC	2 cut(s)	600, 1284
BseYI	CCCAGC	1 cut(s)	620
BsgI	GTGCAG	2 cut(s)	1052, 1283
BshFI	GGCC	2 cut(s)	25, 789
BsiHKAI	GWGCWC	2 cut(s)	589, 1223
BsiSI	CCGG	3 cut(s)	568, 1183, 1358
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	96, 97
BsmAI	GTCTC	2 cut(s)	842, 1265
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	2 cut(s)	53, 178
BsnI	GGCC	2 cut(s)	25, 789
Bso31I	GGTCTC	2 cut(s)	842, 1265
Bsp1286I	GDGCHC	3 cut(s)	589, 762, 1223
Bsp13I	TCCGGA	2 cut(s)	567, 1182
Bsp143I	GATC	6 cut(s)	624, 751, 763, 817, 838, 1132
Bsp19I	CCATGG	3 cut(s)	729, 790, 859
BspACI	CCGC	6 cut(s)	176, 312, 370, 386, 467, 492
BspANI	GGCC	2 cut(s)	25, 789
BspEI	TCCGGA	2 cut(s)	567, 1182
BspHI	TCATGA	6 cut(s)	408, 748, 832, 841, 895, 913
BspLI	GGNNCC	2 cut(s)	77, 626
BspPI	GGATC	3 cut(s)	619, 632, 846
BspTNI	GGTCTC	2 cut(s)	842, 1265
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	2 cut(s)	670, 720
BssECI	CCNNGG	3 cut(s)	729, 790, 859
BssMI	GATC	6 cut(s)	624, 751, 763, 817, 838, 1132
BssSI	CACGAG	1 cut(s)	1292
BssT1I	CCWWGG	3 cut(s)	729, 790, 859
Bst2BI	CACGAG	1 cut(s)	1292
Bst4CI	ACNGT	5 cut(s)	309, 357, 446, 871, 1318
BstC8I	GCNNGC	3 cut(s)	261, 618, 1170
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	3 cut(s)	729, 790, 859
BstF5I	GGATG	7 cut(s)	131, 307, 362, 536, 1191, 1279, 1366
BstH2I	RGCGCY	1 cut(s)	978
BstHHI	GCGC	2 cut(s)	904, 977
BstKTI	GATC	6 cut(s)	627, 754, 766, 820, 841, 1135
BstMAI	GTCTC	2 cut(s)	842, 1265
BstMBI	GATC	6 cut(s)	624, 751, 763, 817, 838, 1132
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	762
BstV1I	GCAGC	2 cut(s)	600, 1284
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	1 cut(s)	624
BstXI	CCANNNNNNTGG	2 cut(s)	665, 860
BstYI	RGATCY	1 cut(s)	624
BsuRI	GGCC	2 cut(s)	25, 789
BtgI	CCRYGG	3 cut(s)	729, 790, 859
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	7 cut(s)	131, 307, 362, 536, 1191, 1279, 1366
BtsIMutI	CAGTG	2 cut(s)	459, 663
Cac8I	GCNNGC	3 cut(s)	261, 618, 1170
CciI	TCATGA	6 cut(s)	408, 748, 832, 841, 895, 913
CfoI	GCGC	2 cut(s)	904, 977
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	3 cut(s)	1052, 1108, 1143
CspCI	CAANNNNNGTGG	2 cut(s)	1231, 1266
CviQI	GTAC	3 cut(s)	1052, 1108, 1143
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	6 cut(s)	626, 753, 765, 819, 840, 1134
DpnII	GATC	6 cut(s)	624, 751, 763, 817, 838, 1132
DraI	TTTAAA	1 cut(s)	31
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	787
Eco130I	CCWWGG	3 cut(s)	729, 790, 859
Eco147I	AGGCCT	1 cut(s)	25
Eco31I	GGTCTC	2 cut(s)	842, 1265
Eco47III	AGCGCT	1 cut(s)	976
Eco57I	CTGAAG	1 cut(s)	999
EcoT14I	CCWWGG	3 cut(s)	729, 790, 859
ErhI	CCWWGG	3 cut(s)	729, 790, 859
FaqI	GGGAC	1 cut(s)	298
FauNDI	CATATG	1 cut(s)	1304
FbaI	TGATCA	2 cut(s)	751, 817
FblI	GTMKAC	1 cut(s)	1395
Fnu4HI	GCNGC	4 cut(s)	468, 492, 614, 1298
FokI	GGATG	7 cut(s)	138, 314, 349, 543, 1198, 1286, 1373
Fsp4HI	GCNGC	4 cut(s)	468, 492, 614, 1298
FspBI	CTAG	2 cut(s)	333, 581
GlaI	GCGC	2 cut(s)	903, 976
GluI	GCNGC	4 cut(s)	468, 492, 614, 1298
GsaI	CCCAGC	1 cut(s)	624
HaeII	RGCGCY	1 cut(s)	978
HaeIII	GGCC	2 cut(s)	25, 789
HapII	CCGG	3 cut(s)	568, 1183, 1358
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	2 cut(s)	904, 977
Hin6I	GCGC	2 cut(s)	902, 975
HinP1I	GCGC	2 cut(s)	902, 975
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	5 cut(s)	101, 454, 910, 1061, 1435
HpaII	CCGG	3 cut(s)	568, 1183, 1358
HphI	GGTGA	3 cut(s)	680, 827, 995
Hpy166II	GTNNAC	2 cut(s)	713, 1396
Hpy188I	TCNGA	8 cut(s)	19, 204, 322, 484, 603, 1071, 1137, 1440
Hpy8I	GTNNAC	2 cut(s)	713, 1396
HpyAV	CCTTC	5 cut(s)	89, 172, 974, 992, 1318
HpyCH4III	ACNGT	5 cut(s)	309, 357, 446, 871, 1318
HpyCH4IV	ACGT	2 cut(s)	11, 1447
HpyCH4V	TGCA	6 cut(s)	51, 305, 500, 647, 1033, 1300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	2 cut(s)	11, 1447
HspAI	GCGC	2 cut(s)	902, 975
Kpn2I	TCCGGA	2 cut(s)	567, 1182
Ksp22I	TGATCA	2 cut(s)	751, 817
Kzo9I	GATC	6 cut(s)	624, 751, 763, 817, 838, 1132
Lsp1109I	GCAGC	2 cut(s)	600, 1284
LweI	GCATC	9 cut(s)	116, 158, 292, 313, 371, 454, 533, 1228, 1351
MaeI	CTAG	2 cut(s)	333, 581
MaeII	ACGT	2 cut(s)	11, 1447
MaeIII	GTNAC	2 cut(s)	871, 1429
MalI	GATC	6 cut(s)	626, 753, 765, 819, 840, 1134
MboI	GATC	6 cut(s)	624, 751, 763, 817, 838, 1132
MboII	GAAGA	5 cut(s)	556, 929, 1021, 1037, 1135
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	624
MhlI	GDGCHC	3 cut(s)	589, 762, 1223
MlsI	TGGCCA	1 cut(s)	789
MluCI	AATT	4 cut(s)	63, 217, 501, 942
MluNI	TGGCCA	1 cut(s)	789
Mox20I	TGGCCA	1 cut(s)	789
MroI	TCCGGA	2 cut(s)	567, 1182
MscI	TGGCCA	1 cut(s)	789
MseI	TTAA	5 cut(s)	30, 720, 945, 1331, 1353
Msp20I	TGGCCA	1 cut(s)	789
MspI	CCGG	3 cut(s)	568, 1183, 1358
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	2 cut(s)	53, 178
MwoI	GCNNNNNNNGC	1 cut(s)	497
NcoI	CCATGG	3 cut(s)	729, 790, 859
NdeI	CATATG	1 cut(s)	1304
NdeII	GATC	6 cut(s)	624, 751, 763, 817, 838, 1132
NlaIV	GGNNCC	2 cut(s)	77, 626
NmuCI	GTSAC	1 cut(s)	871
PagI	TCATGA	6 cut(s)	408, 748, 832, 841, 895, 913
PceI	AGGCCT	1 cut(s)	25
PctI	GAATGC	2 cut(s)	53, 178
PfeI	GAWTC	5 cut(s)	101, 454, 910, 1061, 1435
PkrI	GCNGC	4 cut(s)	469, 493, 615, 1299
PspFI	CCCAGC	1 cut(s)	620
PspN4I	GGNNCC	2 cut(s)	77, 626
PsuI	RGATCY	1 cut(s)	624
RsaI	GTAC	3 cut(s)	1053, 1109, 1144
RsaNI	GTAC	3 cut(s)	1052, 1108, 1143
SaqAI	TTAA	5 cut(s)	30, 720, 945, 1331, 1353
SatI	GCNGC	4 cut(s)	468, 492, 614, 1298
Sau3AI	GATC	6 cut(s)	624, 751, 763, 817, 838, 1132
SduI	GDGCHC	3 cut(s)	589, 762, 1223
SfaNI	GCATC	9 cut(s)	116, 158, 292, 313, 371, 454, 533, 1228, 1351
SfcI	CTRYAG	1 cut(s)	264
SpeI	ACTAGT	1 cut(s)	332
Sse9I	AATT	4 cut(s)	63, 217, 501, 942
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	6 cut(s)	176, 312, 370, 386, 467, 492
SspMI	CTAG	2 cut(s)	333, 581
StuI	AGGCCT	1 cut(s)	25
StyI	CCWWGG	3 cut(s)	729, 790, 859
TaaI	ACNGT	5 cut(s)	309, 357, 446, 871, 1318
TaiI	ACGT	2 cut(s)	14, 1450
TaqI	TCGA	2 cut(s)	152, 908
TasI	AATT	4 cut(s)	63, 217, 501, 942
TatI	WGTACW	2 cut(s)	1051, 1142
TauI	GCSGC	2 cut(s)	470, 494
TfiI	GAWTC	5 cut(s)	101, 454, 910, 1061, 1435
Tru1I	TTAA	5 cut(s)	30, 720, 945, 1331, 1353
Tru9I	TTAA	5 cut(s)	30, 720, 945, 1331, 1353
TscAI	CASTG	2 cut(s)	466, 670
TseFI	GTSAC	1 cut(s)	871
TseI	GCWGC	2 cut(s)	613, 1297
Tsp45I	GTSAC	1 cut(s)	871
TspDTI	ATGAA	4 cut(s)	397, 651, 930, 1037
TspGWI	ACGGA	1 cut(s)	783
TspRI	CASTG	2 cut(s)	466, 670
XapI	RAATTY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	2 cut(s)	118, 797
XmiI	GTMKAC	1 cut(s)	1395
XspI	CTAG	2 cut(s)	333, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.