Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003250

Physical Location & Seq

Genomic Coordinates Reverse (-)

15376332 .. 15376840

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCTGAGAAAGAATTGCACTCTATTAGAGGCGTGGAATTCTCTAAAACAAGTTCATCGTCGGGCACAACCGAATGATGGTTTTGCAAAGATCCTAGTCGATCTGGATAAGAAACTTCACGGGAGAGTTTCCATGGAGTGGCAACAGCGGAAGCCTACAATGAAAGTTTGCCCAATCTGCGGGGTAAATGCAGGTCTGAGTAGCAGCTCGCTTAAGCTTCATTTGCAGAAATCACACAAGAAGCTATCGTCAGGTAGTGTCGACAGTGCAATGACAATGGAGATTCAAAAGGCTTTGACAGCGCTAAAAATTAGCCGAGGCGGAAGCGTCAGCCCTAAACAGAGGTCTCATTCAGATGTGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008138 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010468 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019538 GO:0030865 GO:0031122 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0097305 GO:0097435 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Act-Frag_cataly DSPc

Protein Analysis

123

Amino Acids

13.55

Weight (kDa)

10.02

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23720 AT5G23720 AT5G23720
fragaria_vesca	FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220
malus_domestica	MD06G1132400.v1.1 MD14G1148800.v1.1
prunus_persica	Prupe.5G143400_v2.0.a1
pyrus_communis	pycom06g12400 pycom14g12360
rosa_chinensis	RchiOBHm_Chr4g0416471 RchiOBHm_Chr7g0188941 RchiOBHm_Chr7g0194331
rosa_laevigata	RLG00000004049 RLG00000004648
rosa_multiflora	Rmu_co8071116.1_g000001 Rmu_sc0007831.1_g000001 Rmu_sc0032883.1_g000001 Rmu_ssc0000113.1_g000006
rosa_roxburghii	Rroxscaffold_3G00265920
rosa_rugosa	Rorug06G0494800 Rorug06G0494900 Rorug06G0495000
rosa_samantha	Rh7AG099700 Rh7BG101800 Rh7CG103100 Rh7CG146600 Rh7DG101600 Rh7DG144200
rosa_wichuraiana	Rw7G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	182
AccB7I	CCANNNNNTGG	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	3 cut(s)	148, 180, 321
AclWI	GGATC	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	37
AfeI	AGCGCT	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	77, 138, 179
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	1 cut(s)	287
AluBI	AGCT	3 cut(s)	207, 217, 244
AluI	AGCT	3 cut(s)	207, 217, 244
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	85
Aor51HI	AGCGCT	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	304
BaeGI	GKGCMC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	305
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	132, 316
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 138, 179
Bse3DI	GCAATG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	132, 316
BseLI	CCNNNNNNNGG	3 cut(s)	77, 138, 179
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	216
BslI	CCNNNNNNNGG	3 cut(s)	77, 138, 179
BsmAI	GTCTC	1 cut(s)	351
Bso31I	GGTCTC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	90, 100
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	3 cut(s)	148, 180, 321
BspCNI	CTCAG	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	85
BspTI	CTTAAG	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	132, 316
BssMI	GATC	2 cut(s)	90, 100
BssT1I	CCWWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	266
BstAFI	CTTAAG	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	5, 197
BstDSI	CCRYGG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	2 cut(s)	93, 103
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	2 cut(s)	90, 100
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 223, 299
BstSLI	GKGCMC	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	271
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	1 cut(s)	304
CseI	GACGC	1 cut(s)	316
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	7 cut(s)	154, 207, 217, 244, 293, 315, 333
CviKI_1	RGCY	7 cut(s)	154, 207, 217, 244, 293, 315, 333
DdeI	CTNAG	2 cut(s)	5, 197
DpnI	GATC	2 cut(s)	92, 102
DpnII	GATC	2 cut(s)	90, 100
EciI	GGCGGA	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	351
Eco47III	AGCGCT	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	1 cut(s)	136
FaiI	YATR	1 cut(s)	134
FatI	CATG	1 cut(s)	132
FauI	CCCGC	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	1 cut(s)	205
HaeII	RGCGCY	1 cut(s)	305
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	2 cut(s)	198, 355
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	1 cut(s)	63
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	5 cut(s)	18, 86, 191, 226, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 223, 299
HpyF3I	CTNAG	2 cut(s)	5, 197
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	90, 100
LpnPI	CCDG	3 cut(s)	89, 177, 237
Lsp1109I	GCAGC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	95
MalI	GATC	2 cut(s)	92, 102
MboI	GATC	2 cut(s)	90, 100
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	3 cut(s)	13, 37, 309
MnlI	CCTC	3 cut(s)	22, 311, 336
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	148
MspCI	CTTAAG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	177, 223, 299
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	90, 100
NlaIII	CATG	1 cut(s)	136
NmeAIII	GCCGAG	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	354
SalI	GTCGAC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	2 cut(s)	90, 100
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	6 cut(s)	196, 209, 219, 246, 256, 347
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	3 cut(s)	13, 37, 309
SsiI	CCGC	3 cut(s)	148, 180, 321
SspMI	CTAG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	99, 261
TasI	AATT	3 cut(s)	13, 37, 309
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	3 cut(s)	44, 176, 209
TspRI	CASTG	1 cut(s)	271
Van91I	CCANNNNNTGG	1 cut(s)	138
Vha464I	CTTAAG	1 cut(s)	212
XapI	RAATTY	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.