Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003250

Physical Location & Seq

Genomic Coordinates Reverse (-)

61210820 .. 61211855

Gene Structure 1036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0494900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTACACTTTGACGAGCTTTGATCCAGAAACCACTTATTGGAGTAGAATTCGTGTCATATTGAGATTGTATGACCAAAGGGACCCCAATTGGGATACTTATAACGGGAAACAGCTGCAAGATTCAGTTCATGGTATAATAGGTGCTGTGGAACCCTCACCAGACACCAACTCTCCCCCAAGGCCATCAAACGCCAACACTGAATCACGCATTGTTATTGAAGAGCTGGGAACGCCTCCTGCTGACACTGAGCTTGGTGACTTGAATGAGTTGAATCCCAATGGTCAAACAACCCAAGAGAATGAAAATGCAGTTGAGTTAACTTCCCAAAGTGAAGAGAGGTCAATAACTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008138 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010468 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019538 GO:0030865 GO:0031122 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0097305 GO:0097435 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Act-Frag_cataly DSPc

Protein Analysis

118

Amino Acids

13.29

Weight (kDa)

4.3

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23720 AT5G23720 AT5G23720
fragaria_vesca	FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220
malus_domestica	MD06G1132400.v1.1 MD14G1148800.v1.1
prunus_persica	Prupe.5G143400_v2.0.a1
pyrus_communis	pycom06g12400 pycom14g12360
rosa_chinensis	RchiOBHm_Chr4g0416471 RchiOBHm_Chr7g0188941 RchiOBHm_Chr7g0194331
rosa_laevigata	RLG00000004049 RLG00000004648
rosa_multiflora	Rmu_co8071116.1_g000001 Rmu_sc0007831.1_g000001 Rmu_sc0032883.1_g000001 Rmu_ssc0000113.1_g000006
rosa_roxburghii	Rroxscaffold_3G00265920
rosa_rugosa	Rorug06G0494800 Rorug06G0494900 Rorug06G0495000
rosa_samantha	Rh7AG099700 Rh7BG101800 Rh7CG103100 Rh7CG146600 Rh7DG101600 Rh7DG144200
rosa_wichuraiana	Rw7G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
AccB7I	CCANNNNNTGG	1 cut(s)	39
AclWI	GGATC	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	48
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	39, 91
AgsI	TTSAA	3 cut(s)	221, 265, 274
AluBI	AGCT	4 cut(s)	18, 115, 226, 253
AluI	AGCT	4 cut(s)	18, 115, 226, 253
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	150, 269
AvaII	GGWCC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	1 cut(s)	193
BciVI	GTATCC	1 cut(s)	88
BfuI	GTATCC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	3 cut(s)	83, 84, 153
BsaJI	CCNNGG	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 91
BseDI	CCNNGG	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	39, 91
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	39, 91
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	3 cut(s)	83, 84, 153
BspPI	GGATC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	216
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	179
Bst6I	CTCTTC	2 cut(s)	216, 330
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	1 cut(s)	249
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	102
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	198, 246
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	5 cut(s)	18, 115, 184, 226, 253
CviKI_1	RGCY	5 cut(s)	18, 115, 184, 226, 253
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eam1104I	CTCTTC	2 cut(s)	216, 330
EarI	CTCTTC	2 cut(s)	216, 330
Eco130I	CCWWGG	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	1 cut(s)	134
FaiI	YATR	5 cut(s)	59, 72, 102, 132, 137
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	116
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	3 cut(s)	122, 203, 274
HpaI	GTTAAC	1 cut(s)	321
HphI	GGTGA	2 cut(s)	150, 269
Hpy166II	GTNNAC	2 cut(s)	6, 321
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	2 cut(s)	6, 321
HpyCH4V	TGCA	2 cut(s)	118, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	134
KflI	GGGWCCC	1 cut(s)	82
KspAI	GTTAAC	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	22
LguI	GCTCTTC	1 cut(s)	216
LpnPI	CCDG	4 cut(s)	39, 174, 212, 252
Lsp1109I	GCAGC	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	2 cut(s)	233, 347
MfeI	CAATTG	1 cut(s)	88
MluCI	AATT	2 cut(s)	48, 88
MnlI	CCTC	3 cut(s)	166, 246, 333
MseI	TTAA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	115
MunI	CAATTG	1 cut(s)	88
MwoI	GCNNNNNNNGC	1 cut(s)	232
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	3 cut(s)	83, 84, 153
NmuCI	GTSAC	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	122, 203, 274
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	117
PpuMI	RGGWCCY	1 cut(s)	82
PsiI	TTATAA	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	83, 84, 153
PspPI	GGNCC	1 cut(s)	82
PspPPI	RGGWCCY	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	82
SetI	ASST	6 cut(s)	20, 117, 145, 228, 255, 344
SinI	GGWCC	1 cut(s)	82
Sse9I	AATT	2 cut(s)	48, 88
StyI	CCWWGG	1 cut(s)	179
TasI	AATT	2 cut(s)	48, 88
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	3 cut(s)	122, 203, 274
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TscAI	CASTG	2 cut(s)	205, 253
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	119, 318
TspRI	CASTG	2 cut(s)	205, 253
Van91I	CCANNNNNTGG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.