Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003250

Physical Location & Seq

Genomic Coordinates Forward (+)

12441443 .. 12442335

Gene Structure 893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGATGTTGTTGAGAAGATGTTGTGCCTTCGAATCATAAGTAGCCTGTTTATTGGTGGAGCGCTTGCTGCACGATCTGTAGACTCACTACAACGCTTAGGAATCACTCATATATTATGTTTTTGTTCCAATGAAATTGGACAGTCAGATACGATTCTCCGTTTCCTGATCTATTTGAGTACAAAAACTTCTCTTGAAGATTTCAACATGTCCAACATCTTTGATGAAGCTGTTGAGTTTATTGATCATGTTGAAGAAACAGGAGGGAAGGTTCTAGTCCATTGCTTTGAGGGAAAAAGTAGAAGTGCTACGCTAGTGCTTGCATACCTCCTCATTTTTTTGGTATGTTGCAACAAGACTACCTTACGAAATGATCTGCTATATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008138 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010468 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019538 GO:0030865 GO:0031122 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0097305 GO:0097435 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Act-Frag_cataly DSPc

Protein Analysis

129

Amino Acids

14.47

Weight (kDa)

5.54

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	17 - 111	4.6e-17	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23720 AT5G23720 AT5G23720
fragaria_vesca	FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220
malus_domestica	MD06G1132400.v1.1 MD14G1148800.v1.1
prunus_persica	Prupe.5G143400_v2.0.a1
pyrus_communis	pycom06g12400 pycom14g12360
rosa_chinensis	RchiOBHm_Chr4g0416471 RchiOBHm_Chr7g0188941 RchiOBHm_Chr7g0194331
rosa_laevigata	RLG00000004049 RLG00000004648
rosa_multiflora	Rmu_co8071116.1_g000001 Rmu_sc0007831.1_g000001 Rmu_sc0032883.1_g000001 Rmu_ssc0000113.1_g000006
rosa_roxburghii	Rroxscaffold_3G00265920
rosa_rugosa	Rorug06G0494800 Rorug06G0494900 Rorug06G0495000
rosa_samantha	Rh7AG099700 Rh7BG101800 Rh7CG103100 Rh7CG146600 Rh7DG101600 Rh7DG144200
rosa_wichuraiana	Rw7G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	181
AfeI	AGCGCT	1 cut(s)	63
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	3 cut(s)	197, 205, 254
AloI	GAACNNNNNNTCC	2 cut(s)	255, 287
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
Aor51HI	AGCGCT	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	31
BarI	GAAGNNNNNNTAC	2 cut(s)	172, 204
BbvI	GCAGC	1 cut(s)	55
BclI	TGATCA	1 cut(s)	244
BfaI	CTAG	2 cut(s)	275, 314
BfmI	CTRYAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	65
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	97
Bpu14I	TTCGAA	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bse3DI	GCAATG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	54
Bsp119I	TTCGAA	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	74, 168, 244, 373
BspT104I	TTCGAA	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	280
BssMI	GATC	4 cut(s)	74, 168, 244, 373
Bst4CI	ACNGT	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	66, 321
BstDEI	CTNAG	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	4 cut(s)	77, 171, 247, 376
BstMBI	GATC	4 cut(s)	74, 168, 244, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	66, 321
CfoI	GCGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	2 cut(s)	208, 248
CviJI	RGCY	2 cut(s)	45, 230
CviKI_1	RGCY	2 cut(s)	45, 230
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	1 cut(s)	97
DpnI	GATC	4 cut(s)	76, 170, 246, 375
DpnII	GATC	4 cut(s)	74, 168, 244, 373
Eco47III	AGCGCT	1 cut(s)	63
FaeI	CATG	2 cut(s)	211, 251
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	2 cut(s)	207, 247
FbaI	TGATCA	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	2 cut(s)	275, 314
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	65
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	211, 251
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	4 cut(s)	33, 83, 102, 154
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	166, 194
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	38, 262
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4V	TGCA	3 cut(s)	71, 323, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	97
Hsp92II	CATG	2 cut(s)	211, 251
HspAI	GCGC	1 cut(s)	62
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	4 cut(s)	74, 168, 244, 373
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	3 cut(s)	59, 179, 246
Lsp1109I	GCAGC	1 cut(s)	55
MaeI	CTAG	2 cut(s)	275, 314
MalI	GATC	4 cut(s)	76, 170, 246, 375
MboI	GATC	4 cut(s)	74, 168, 244, 373
MboII	GAAGA	3 cut(s)	28, 209, 266
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	4 cut(s)	257, 283, 338, 341
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	4 cut(s)	74, 168, 244, 373
NlaIII	CATG	2 cut(s)	211, 251
NspI	RCATGY	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	31
PciI	ACATGT	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	33, 102, 154
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PscI	ACATGT	1 cut(s)	207
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	4 cut(s)	74, 168, 244, 373
SchI	GAGTC	1 cut(s)	77
SetI	ASST	4 cut(s)	232, 273, 330, 365
SfcI	CTRYAG	1 cut(s)	78
SfuI	TTCGAA	1 cut(s)	31
Sse9I	AATT	1 cut(s)	135
SspMI	CTAG	2 cut(s)	275, 314
TaaI	ACNGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	135
TatI	WGTACW	1 cut(s)	179
TfiI	GAWTC	3 cut(s)	33, 102, 154
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	147, 240
TspGWI	ACGGA	1 cut(s)	149
XceI	RCATGY	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	2 cut(s)	275, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.