Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003250

Physical Location & Seq

Genomic Coordinates Forward (+)

12291671 .. 12292591

Gene Structure 921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG144200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGCTAAAGAGCGATGCAGTGAAACTTTGCCAGGAAAACAATTTAAATGCTAGGTTCTTTGAGGGTAGTGACAATAACGGCATAGTTGACGCTTATGAATTGAAGACTACCCACCTCTTTGAACATATATATGACAGTGAAGATTTCAACATCACCAACATCTTTGATGAAGCTGTTGAGTTTATTGATCATGTTGAAGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008138 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010468 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019538 GO:0030865 GO:0031122 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0097305 GO:0097435 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Act-Frag_cataly DSPc

Protein Analysis

68

Amino Acids

7.91

Weight (kDa)

4.18

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23720 AT5G23720 AT5G23720
fragaria_vesca	FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220
malus_domestica	MD06G1132400.v1.1 MD14G1148800.v1.1
prunus_persica	Prupe.5G143400_v2.0.a1
pyrus_communis	pycom06g12400 pycom14g12360
rosa_chinensis	RchiOBHm_Chr4g0416471 RchiOBHm_Chr7g0188941 RchiOBHm_Chr7g0194331
rosa_laevigata	RLG00000004049 RLG00000004648
rosa_multiflora	Rmu_co8071116.1_g000001 Rmu_sc0007831.1_g000001 Rmu_sc0032883.1_g000001 Rmu_ssc0000113.1_g000006
rosa_roxburghii	Rroxscaffold_3G00265920
rosa_rugosa	Rorug06G0494800 Rorug06G0494900 Rorug06G0495000
rosa_samantha	Rh7AG099700 Rh7BG101800 Rh7CG103100 Rh7CG146600 Rh7DG101600 Rh7DG144200
rosa_wichuraiana	Rw7G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	4 cut(s)	103, 122, 148, 197
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	187
BfaI	CTAG	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	187
BssMI	GATC	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	137
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	110
BtgZI	GCGATG	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 142
CseI	GACGC	1 cut(s)	98
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	1 cut(s)	173
CviKI_1	RGCY	1 cut(s)	173
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
DraI	TTTAAA	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	194
FaiI	YATR	8 cut(s)	83, 96, 126, 128, 130, 132, 192, 205
FatI	CATG	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	187
FspBI	CTAG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	2 cut(s)	17, 44
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	115, 152
MluCI	AATT	2 cut(s)	40, 98
MnlI	CCTC	2 cut(s)	55, 125
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	3 cut(s)	56, 117, 175
SfaNI	GCATC	1 cut(s)	4
SgeI	CNNG	4 cut(s)	43, 44, 63, 203
SmiI	ATTTAAAT	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	2 cut(s)	40, 98
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	30
SwaI	ATTTAAAT	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	137
TasI	AATT	2 cut(s)	40, 98
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	2 cut(s)	24, 142
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	111, 183
TspRI	CASTG	2 cut(s)	24, 142
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.