Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003250

Physical Location & Seq

Genomic Coordinates Reverse (-)

7633631 .. 7647527

Gene Structure 13897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG099700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4122 bp

ATGAAGACAATGGCAATGGCTCTACTACTTGTGCTTCAGCTGTGCTTCATTTCCATGGAGTTTGTTGAGTCCTCATCTCATCACTATGATCACAAGATAGTTAGGCTTCCAGGACAACCCAGTGTGGACTTTCAACACTTTTCAGGTTATATTTCTGTGAGCGATCATCAGAAAAACCACAAAGCTCTATTTTACTACTTTGCTGAAGCAGAAAAAAACCCAGCTTCAAAGCCTTTGGTCCTCTGGTTAAATGGAGGTCCTGGTTGTTCTTCTGTTGGAGTAGGGGCTTTCTCTGAAAATGGACCTTTTAGACCAGATGGTCAAGTCCTGGTTAGAAATGAGTACAGCTGGAATATAGAGGCTAATATGTTGTATTTAGAGACACCAGTTGGTGTGGGATTCTCTTATTCTAGACATAGCTCCAACGATGTGGCAGTGGATGATGAAGCAACAGCCAGGGACAATCTTGTATTCTTACAACGCTGGTTCAACAAGTTCCCTCAATATAAGCACAGAGATTTGTTTCTAACTGGAGAAAGTTATGCAGGTCACTACATCCCTCAACTTGCAAAGCTTATGGTTGAAGCTAACAGCAAAGAGAAGTTGTTCAATCTAAAAGGACTAGCTTTAGGTAACCCTGTCCTAGAATTCGCCACCGACTTAAATTCAAGAGCTGAGTATTTCTGGTCTCATGGACTAATATCAGACTCAACATACAGAATGTTCACTTCTGTTTGCAACTATTCGCGCTACGTGAGTGAGTACTATAGAGACTCGGTTTCACCTGTTTGTTCAAGAGTTATGAACCAAGTGAGCATAGAAACCAGTAAATTTGTGGATAAGTATGATGTCACTCTTGACGTCTGCATTTCATCTGTGCTCTCACAGTCAAAGGCTATAAGCCCCAACCAAATGACACAGAGGATTGATGTGTGTGTAGAAGACAAGATTGTAAGTTACTTGAACCGAAAAGATGTGCAGAAGGCTCTCCATGCCAAGCTTGTAGGGGTTCGAAGATGGGATGTTTGCAGCGATGATACTAGCATTTTGGACTACCAAATGCTCGACCTGGAAATCCCTACAATCTCACTAGTTGGATCTATTGTCAAGGCCGGAATTCCAGTGTTAGTTTACAGTGGAGATCAGGATTCTGCAATTCCATTGACGGGAAGCCGAACCTTGGTCGACAGATTGGCAAGGGAGTTAGGACTGAACACCACTGTCCCTTATAGAGTTTGGTTTCAGGGAAAACAGGTTGGTGGATGGACTCAAGTTTATGGGAACATACTTTCATTTGCAACCATCAGAGGTGCCTCTCATGAAGCTCCATTCTCACAGCCTGAGAGATCACTCATGCTATTCAAGTCATTTCTTCAAGGCAGGGCTCTACCTCTAGAAGACGGGGATCTGGACCCTGGATCTGACGACCTCGAGGCTCCTCTGCCTCTCACCGTCACTTCCCGGGTCTTGTATATGTTGGGTGACATTGCGTCTGGACCGGCCTTCAAAATCAGTCAATGGCTGGAATTGGTCCGTAAACGCAGTGCCAAATACCATTCATCTGGCTTCCCTCGCCGCCCATTAAGGCTTGACACAATGCCTGCTAGTGCAGGAGAGTGTAGTGAGGACTGGAAAGGTCCTGCGTCGCCTGAGCAAACCACAGAAGTCAATCTCTGGGAAAGACTTGGTAAAGCTGCTACATTGGACATTGAGTCGAGTTTTTTCTCATGGGATAGGCTTTCTTCACTTCACCACACTGAACATAGTAGTAGCAATGATCAGTCTGAGGATGAAATGAACAAAGCGCTGGAGGTCACCGTGAATTCGGGGGGAGTTGTTTTCTTTGCCCTTTTCAACCAGCCAGGGACTGATGATAACTCTTCTAAGGAAGCAGCGGCTGTTATAAAGATATCTTCATCGAGGATGGCCACACAGTCTGAACGTCTAGGTTACGAATTTGCAAAGTGGCTTGGAGTTCGAACTCCACAGGCCAGAGTCATACATAATTGTAGTATGGAGTGGCTCCAGATGAAGGAAGCAGCAGAAAAAGCAAGGGAAGCAGCAGTTTCAGAAGGAGATGAATGTGGGGAAATGACATGTTCGGAACTTTTGGAAGCTCTTGAACTTAGCCGATGCCTTTTGCTCATGAGCTATGTTCACGGATCTCCTTTACTTGAAAGCTCAAGTGTATTTGAGGTGAAGGAAACTGCAGAGAAAACAGCAGCTTCTCTTGGTAGGATCTTGATGTTGGACCTTGTCATCAGAAATGAAGATAGACTACCTTGCCGTCAGCTCAGATGGCGTGGAAACTCGGCAAATCTATTGTTTGCAGACAAAATTGATTTTGGAAATATGGACAGATTGGAGGAAGCCTTTGATTCTGCCATCAAGAGATACAAACCAAGAGTGATCAGAGCTCTTCAAAAGGATAGAAGGGCAACTTCAGTAGATATCAGATTGCATAATACAGCATTGGTACCACAGAAATCTGATCTTTCTGACATTATGGATTCGCCAAGGTCTAGTCAGATGAGCGTAAAGAGTCAACTCTCAGATGATTTAATGTTTTCCGATTTTCCAGTTGTGGCTATTGATTCTGGCGTTCCTCGTCGACCTCCTGCTGGAAAACGTGCAAATGACCAGGAAATTTATCCAAAGTTGGTTGAGTTACTACTGAACAATTCTGAATACTCCTCTAATCTGTTACATGACATAACATTAGGGAAATTAGGACGTCCTCCGTTACAAGATACTGATGCATCTGATACACAATCAATGGAAATGACTTTGGTTGTTCAAGGGTTCCGTAGTGGGTTCAAACGTGCTCTCAGGGATCTGCAAGGATTCCATATCTTCTTACTCACACTTCATCAAAAACTGGAGAATTTGATACGTATATTTTTCAATATTATAGATAAAATAGGGGAGTCCGATAAGGAGGATTTGGTAGTTATTGAGTCTCCATCACAAGCTGCCGGAAGTGGTTATTTTCCTTCTACACCAAATAAGGAGAGGCTTGTCAATGAGAACCATTCAGATTTTAGTGATTCCGAATTGCAGAGAACTGCTCCAAGGCCTTCAACTTCAGGACCTAAAGAAAGCTGTGACTGCAGCTCTCCCATGTCACGGGAGAGTTGGCACGGAAAGTTTTGGAAAGGGAGTGCAAGTTCAGATCCCCTCCGTAGTCTGCGTTTGACAGCAAAGCTCCGGGACTTTCATAAAAATGCCAAGGTTGATGCTGAAACAAACAAAGAATTGGAACAGTGGAATGAAATGCTAAAGAGCGATGCAGTCAAACTTTGCCAGGAGAACAATTTTAATGCTGGGTTCTTTGAGGGTAGTGACAATAACGGCGTAGTTGACGCTTATGAATTGAAGGTCAGACTTGAGCACATTCTCGAGAGAATTTCATTGATATCTGAGGCTGCAAATACAGAGAGGCCATCTCGAATCACAAGTAGCCTGTTTATTGGTGGAGCGCTTGCTGCACGATCTGTATACACACTGCAACGCTTAGGAATCACTCATATATTATGTTTGTGTTCCAATGAAATTGGACAGTCAGATTCCCAGTTTCCTGATCTATTTGAGTACAAAAACTTCTCTATATGTGACAGTGAAGATTTCAACATCAGCAACATCTTTGATGAAGCTGTTGAGTTTATTGATCGTGTTGAAGAAACAGGAGGGAAGGTTCTAGTCCATTGCTTTGAGGGAAAAAGTAGAAGTGCTACACTAGTGCTTGCATACCTAATGCTCAGAAAGAATTCCACTCTATTAGAAGCATGGAATTCTCTAAAGCAGGTTCATCGCCGAGCACAACCCAATGATGGGTTTGCGAAGATCTTGTTGAATTTGGATAAGAAACTGCATGGTAAAGTTTCAATGGAGTGGCATCAGCGGAAGCCAATGATGAAAGTTTGCCCCATCTGTGGGGTGAATGCGGGTCTGAGTAGCAGCTCTCTTAAGCTTCATTTACAGAAATCACATAAGAAACTATCGTCTGGTAGCGTGGATAGCGCAATGACAATGGAAATACAAAAGGCTTTGACAGTACTAAAAATCAGTCGAGGCGGAAGTGTCAGCCCCACACAAAGATCTCATTCAGATGTTGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008138 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010468 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019538 GO:0030865 GO:0031122 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0097305 GO:0097435 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Act-Frag_cataly DSPc

Protein Analysis

1373

Amino Acids

153.73

Weight (kDa)

6.04

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	37 - 460	1.2e-125	Serine carboxypeptidase
Act-Frag_cataly	PF09192	555 - 867	2.1e-46	Actin-fragmin kinase, catalytic
DSPc	PF00782	1157 - 1287	2.2e-24	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23720 AT5G23720 AT5G23720
fragaria_vesca	FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220
malus_domestica	MD06G1132400.v1.1 MD14G1148800.v1.1
prunus_persica	Prupe.5G143400_v2.0.a1
pyrus_communis	pycom06g12400 pycom14g12360
rosa_chinensis	RchiOBHm_Chr4g0416471 RchiOBHm_Chr7g0188941 RchiOBHm_Chr7g0194331
rosa_laevigata	RLG00000004049 RLG00000004648
rosa_multiflora	Rmu_co8071116.1_g000001 Rmu_sc0007831.1_g000001 Rmu_sc0032883.1_g000001 Rmu_ssc0000113.1_g000006
rosa_roxburghii	Rroxscaffold_3G00265920
rosa_rugosa	Rorug06G0494800 Rorug06G0494900 Rorug06G0495000
rosa_samantha	Rh7AG099700 Rh7BG101800 Rh7CG103100 Rh7CG146600 Rh7DG101600 Rh7DG144200
rosa_wichuraiana	Rw7G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1904
AasI	GACNNNNNNGTC	1 cut(s)	318
AatII	GACGTC	2 cut(s)	864, 2737
AbsI	CCTCGAGG	1 cut(s)	1430
Acc36I	ACCTGC	2 cut(s)	536, 3793
Acc65I	GGTACC	1 cut(s)	2476
AccB1I	GGYRCC	2 cut(s)	1310, 2476
AccI	GTMKAC	3 cut(s)	1185, 2611, 3498
AccII	CGCG	1 cut(s)	748
AciI	CCGC	5 cut(s)	1576, 1895, 3901, 3944, 4074
AclWI	GGATC	7 cut(s)	1105, 1413, 1426, 2170, 2246, 2841, 3167
AcoI	YGGCCR	1 cut(s)	1926
AcuI	CTGAAG	4 cut(s)	20, 225, 2427, 3069
AcyI	GRCGYC	2 cut(s)	861, 2734
AfaI	GTAC	5 cut(s)	344, 764, 2478, 3593, 4056
AfeI	AGCGCT	2 cut(s)	1806, 3480
AfiI	CCNNNNNNNGG	9 cut(s)	1166, 1180, 2032, 2621, 3126, 3830, 3831, 3932, 3933
AflII	CTTAAG	1 cut(s)	3965
AflIII	ACRYGT	1 cut(s)	2096
AhdI	GACNNNNNGTC	2 cut(s)	1489, 1711
AhlI	ACTAGT	2 cut(s)	1090, 3736
AjnI	CCWGG	9 cut(s)	109, 259, 327, 455, 1068, 1414, 1861, 2640, 3303
AloI	GAACNNNNNNTCC	4 cut(s)	3151, 3183, 3678, 3710
Alw21I	GWGCWC	5 cut(s)	882, 2419, 2827, 3393, 3820
Alw26I	GTCTC	4 cut(s)	374, 693, 765, 2964
AlwI	GGATC	7 cut(s)	1105, 1413, 1426, 2170, 2246, 2841, 3167
AlwNI	CAGNNNCTG	2 cut(s)	1868, 1898
Ama87I	CYCGRG	3 cut(s)	1430, 1461, 3398
Aor51HI	AGCGCT	2 cut(s)	1806, 3480
AoxI	GGCC	6 cut(s)	1110, 1500, 1926, 1989, 3074, 3440
Asp700I	GAANNNNTTC	2 cut(s)	605, 3766
Asp718I	GGTACC	1 cut(s)	2476
AspLEI	GCGC	4 cut(s)	750, 1807, 3481, 4022
AspS9I	GGNCC	9 cut(s)	238, 257, 302, 1411, 1496, 1531, 1637, 2251, 3089
AsuC2I	CCSGG	3 cut(s)	1462, 1463, 3209
AsuHPI	GGTGA	7 cut(s)	774, 1441, 1493, 1742, 1807, 2209, 3949
AsuII	TTCGAA	2 cut(s)	1012, 1978
AvaI	CYCGRG	3 cut(s)	1430, 1461, 3398
AvaII	GGWCC	9 cut(s)	238, 257, 302, 1411, 1496, 1531, 1637, 2251, 3089
BalI	TGGCCA	1 cut(s)	1928
BanI	GGYRCC	2 cut(s)	1310, 2476
BanII	GRGCYC	2 cut(s)	1387, 2419
BarI	GAAGNNNNNNTAC	4 cut(s)	2262, 2294, 3584, 3616
BbsI	GAAGAC	3 cut(s)	11, 948, 1404
Bbv12I	GWGCWC	5 cut(s)	882, 2419, 2827, 3393, 3820
BceAI	ACGGC	2 cut(s)	2271, 3367
BcgI	CGANNNNNNTGC	2 cut(s)	3791, 3825
BciT130I	CCWGG	9 cut(s)	111, 261, 329, 457, 1070, 1416, 1863, 2642, 3305
BclI	TGATCA	3 cut(s)	88, 1777, 2409
BcnI	CCSGG	3 cut(s)	1462, 1463, 3209
BcoDI	GTCTC	4 cut(s)	374, 693, 765, 2964
BcuI	ACTAGT	2 cut(s)	1090, 3736
BfmI	CTRYAG	3 cut(s)	766, 2208, 3109
BfoI	RGCGCY	2 cut(s)	1808, 3482
BfrI	CTTAAG	1 cut(s)	3965
BfuAI	ACCTGC	2 cut(s)	536, 3793
BglII	AGATCT	2 cut(s)	3843, 4097
BmcAI	AGTACT	2 cut(s)	764, 4056
Bme18I	GGWCC	9 cut(s)	238, 257, 302, 1411, 1496, 1531, 1637, 2251, 3089
BmeRI	GACNNNNNGTC	2 cut(s)	1489, 1711
BmeT110I	CYCGRG	3 cut(s)	1430, 1461, 3398
BmgT120I	GGNCC	9 cut(s)	238, 257, 302, 1411, 1496, 1531, 1637, 2251, 3089
BmiI	GGNNCC	6 cut(s)	1312, 1413, 1437, 2024, 2478, 2804
BmrI	ACTGGG	2 cut(s)	114, 3565
BmsI	GCATC	6 cut(s)	2123, 2746, 2768, 3226, 3277, 3904
BmuI	ACTGGG	2 cut(s)	114, 3565
BpiI	GAAGAC	3 cut(s)	11, 948, 1404
BplI	GAGNNNNNCTC	4 cut(s)	3052, 3084, 3430, 3462
BpmI	CTGGAG	4 cut(s)	552, 1829, 2009, 2900
Bpu10I	CCTNAGC	2 cut(s)	1650, 3514
Bpu14I	TTCGAA	2 cut(s)	1012, 1978
BpuEI	CTTGAG	3 cut(s)	1254, 2167, 3407
BpuMI	CCSGG	3 cut(s)	1462, 1463, 3209
BsaAI	YACGTR	2 cut(s)	754, 2894
BsaHI	GRCGYC	2 cut(s)	861, 2734
BsaI	GGTCTC	1 cut(s)	693
BsaJI	CCNNGG	9 cut(s)	54, 456, 1179, 1414, 1461, 1862, 2516, 3071, 3228
BsaXI	ACNNNNNCTCC	4 cut(s)	3151, 3181, 3678, 3708
Bsc4I	CCNNNNNNNGG	9 cut(s)	1166, 1180, 2032, 2621, 3126, 3830, 3831, 3932, 3933
Bse118I	RCCGGY	1 cut(s)	1498
Bse1I	ACTGG	9 cut(s)	120, 386, 535, 825, 1121, 1634, 2579, 2883, 3571
Bse3DI	GCAATG	5 cut(s)	21, 1485, 1780, 3703, 4029
BseBI	CCWGG	9 cut(s)	111, 261, 329, 457, 1070, 1416, 1863, 2642, 3305
BseDI	CCNNGG	9 cut(s)	54, 456, 1179, 1414, 1461, 1862, 2516, 3071, 3228
BseGI	GGATG	6 cut(s)	445, 555, 1027, 1268, 1795, 1929
BseLI	CCNNNNNNNGG	9 cut(s)	1166, 1180, 2032, 2621, 3126, 3830, 3831, 3932, 3933
BseMI	GCAATG	5 cut(s)	21, 1485, 1780, 3703, 4029
BseNI	ACTGG	9 cut(s)	120, 386, 535, 825, 1121, 1634, 2579, 2883, 3571
BseRI	GAGGAG	2 cut(s)	1428, 2683
BseYI	CCCAGC	2 cut(s)	220, 3323
BsgI	GTGCAG	3 cut(s)	998, 1629, 3471
Bsh1236I	CGCG	1 cut(s)	748
BshFI	GGCC	6 cut(s)	1112, 1502, 1928, 1991, 3076, 3442
BshNI	GGYRCC	2 cut(s)	1310, 2476
BsiHKAI	GWGCWC	5 cut(s)	882, 2419, 2827, 3393, 3820
BsiHKCI	CYCGRG	3 cut(s)	1430, 1461, 3398
BsiSI	CCGG	5 cut(s)	1113, 1462, 1499, 2976, 3208
BslFI	GGGAC	4 cut(s)	473, 1208, 1879, 3224
BslI	CCNNNNNNNGG	9 cut(s)	1166, 1180, 2032, 2621, 3126, 3830, 3831, 3932, 3933
BsmAI	GTCTC	4 cut(s)	374, 693, 765, 2964
BsmFI	GGGAC	4 cut(s)	473, 1208, 1879, 3224
BsmI	GAATGC	1 cut(s)	3946
BsnI	GGCC	6 cut(s)	1112, 1502, 1928, 1991, 3076, 3442
Bso31I	GGTCTC	1 cut(s)	693
BsoBI	CYCGRG	3 cut(s)	1430, 1461, 3398
Bsp119I	TTCGAA	2 cut(s)	1012, 1978
Bsp1286I	GDGCHC	6 cut(s)	882, 1387, 2419, 2827, 3393, 3820
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	5 cut(s)	1576, 1895, 3901, 3944, 4074
BspANI	GGCC	6 cut(s)	1112, 1502, 1928, 1991, 3076, 3442
BspFNI	CGCG	1 cut(s)	748
BspHI	TCATGA	2 cut(s)	1318, 2145
BspLI	GGNNCC	6 cut(s)	1312, 1413, 1437, 2024, 2478, 2804
BspMAI	CTGCAG	2 cut(s)	2212, 3113
BspMI	ACCTGC	2 cut(s)	536, 3793
BspPI	GGATC	7 cut(s)	1105, 1413, 1426, 2170, 2246, 2841, 3167
BspQI	GCTCTTC	1 cut(s)	2424
BspT104I	TTCGAA	2 cut(s)	1012, 1978
BspT107I	GGYRCC	2 cut(s)	1310, 2476
BspTI	CTTAAG	1 cut(s)	3965
BspTNI	GGTCTC	1 cut(s)	693
BsrDI	GCAATG	5 cut(s)	21, 1485, 1780, 3703, 4029
BsrFI	RCCGGY	1 cut(s)	1498
BsrI	ACTGG	9 cut(s)	120, 386, 535, 825, 1121, 1634, 2579, 2883, 3571
BssAI	RCCGGY	1 cut(s)	1498
BssECI	CCNNGG	9 cut(s)	54, 456, 1179, 1414, 1461, 1862, 2516, 3071, 3228
BssNAI	GTATAC	1 cut(s)	3499
BssNI	GRCGYC	2 cut(s)	861, 2734
BssT1I	CCWWGG	5 cut(s)	54, 1179, 2516, 3071, 3228
Bst1107I	GTATAC	1 cut(s)	3499
Bst2UI	CCWGG	9 cut(s)	111, 261, 329, 457, 1070, 1416, 1863, 2642, 3305
Bst6I	CTCTTC	3 cut(s)	1885, 2424, 4110
BstACI	GRCGYC	2 cut(s)	861, 2734
BstAFI	CTTAAG	1 cut(s)	3965
BstBAI	YACGTR	2 cut(s)	754, 2894
BstBI	TTCGAA	2 cut(s)	1012, 1978
BstC8I	GCNNGC	3 cut(s)	1602, 3483, 3744
BstDSI	CCRYGG	1 cut(s)	54
BstEII	GGTNACC	2 cut(s)	632, 1813
BstF5I	GGATG	6 cut(s)	445, 555, 1027, 1268, 1795, 1929
BstFNI	CGCG	1 cut(s)	748
BstH2I	RGCGCY	2 cut(s)	1808, 3482
BstHHI	GCGC	4 cut(s)	750, 1807, 3481, 4022
BstMAI	GTCTC	4 cut(s)	374, 693, 765, 2964
BstMWI	GCNNNNNNNGC	8 cut(s)	992, 1572, 2048, 2057, 2299, 3108, 3485, 4017
BstNI	CCWGG	9 cut(s)	111, 261, 329, 457, 1070, 1416, 1863, 2642, 3305
BstNSI	RCATGY	1 cut(s)	2100
BstPI	GGTNACC	2 cut(s)	632, 1813
BstSFI	CTRYAG	3 cut(s)	766, 2208, 3109
BstSNI	TACGTA	1 cut(s)	2894
BstUI	CGCG	1 cut(s)	748
BstV2I	GAAGAC	3 cut(s)	11, 948, 1404
BstX2I	RGATCY	9 cut(s)	1097, 1405, 1418, 2162, 2238, 2833, 3172, 3843, 4097
BstXI	CCANNNNNNTGG	2 cut(s)	430, 1562
BstYI	RGATCY	9 cut(s)	1097, 1405, 1418, 2162, 2238, 2833, 3172, 3843, 4097
BstZ17I	GTATAC	1 cut(s)	3499
BsuRI	GGCC	6 cut(s)	1112, 1502, 1928, 1991, 3076, 3442
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	3 cut(s)	1047, 3300, 3794
BtsCI	GGATG	6 cut(s)	445, 555, 1027, 1268, 1795, 1929
BtsI	GCAGTG	3 cut(s)	441, 1549, 3503
BveI	ACCTGC	2 cut(s)	536, 3793
Cac8I	GCNNGC	3 cut(s)	1602, 3483, 3744
CaiI	CAGNNNCTG	2 cut(s)	1868, 1898
CciI	TCATGA	2 cut(s)	1318, 2145
CfoI	GCGC	4 cut(s)	750, 1807, 3481, 4022
Cfr10I	RCCGGY	1 cut(s)	1498
Cfr13I	GGNCC	9 cut(s)	238, 257, 302, 1411, 1496, 1531, 1637, 2251, 3089
Cfr9I	CCCGGG	1 cut(s)	1461
CseI	GACGC	3 cut(s)	1479, 1632, 3371
Csp6I	GTAC	5 cut(s)	343, 763, 2477, 3592, 4055
CviQI	GTAC	5 cut(s)	343, 763, 2477, 3592, 4055
DrdI	GACNNNNNNGTC	1 cut(s)	318
DriI	GACNNNNNGTC	2 cut(s)	1489, 1711
DseDI	GACNNNNNNGTC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	1926
Eam1104I	CTCTTC	3 cut(s)	1885, 2424, 4110
Eam1105I	GACNNNNNGTC	2 cut(s)	1489, 1711
EarI	CTCTTC	3 cut(s)	1885, 2424, 4110
EciI	GGCGGA	1 cut(s)	4089
Ecl136II	GAGCTC	1 cut(s)	2417
Eco105I	TACGTA	1 cut(s)	2894
Eco130I	CCWWGG	5 cut(s)	54, 1179, 2516, 3071, 3228
Eco147I	AGGCCT	1 cut(s)	3076
Eco24I	GRGCYC	2 cut(s)	1387, 2419
Eco31I	GGTCTC	1 cut(s)	693
Eco32I	GATATC	3 cut(s)	1911, 2452, 3417
Eco47I	GGWCC	9 cut(s)	238, 257, 302, 1411, 1496, 1531, 1637, 2251, 3089
Eco47III	AGCGCT	2 cut(s)	1806, 3480
Eco53kI	GAGCTC	1 cut(s)	2417
Eco57I	CTGAAG	4 cut(s)	20, 225, 2427, 3069
Eco88I	CYCGRG	3 cut(s)	1430, 1461, 3398
Eco91I	GGTNACC	2 cut(s)	632, 1813
EcoICRI	GAGCTC	1 cut(s)	2417
EcoO109I	RGGNCCY	3 cut(s)	257, 1637, 3089
EcoO65I	GGTNACC	2 cut(s)	632, 1813
EcoRI	GAATTC	5 cut(s)	647, 1116, 1822, 3766, 3790
EcoRII	CCWGG	9 cut(s)	109, 259, 327, 455, 1068, 1414, 1861, 2640, 3303
EcoRV	GATATC	3 cut(s)	1911, 2452, 3417
EcoT14I	CCWWGG	5 cut(s)	54, 1179, 2516, 3071, 3228
EcoT22I	ATGCAT	1 cut(s)	2761
EcoT38I	GRGCYC	2 cut(s)	1387, 2419
ErhI	CCWWGG	5 cut(s)	54, 1179, 2516, 3071, 3228
FalI	AAGNNNNNCTT	2 cut(s)	2425, 2457
FaqI	GGGAC	4 cut(s)	473, 1208, 1879, 3224
FauI	CCCGC	1 cut(s)	3937
FbaI	TGATCA	3 cut(s)	88, 1777, 2409
FblI	GTMKAC	3 cut(s)	1185, 2611, 3498
FokI	GGATG	6 cut(s)	452, 542, 1034, 1275, 1802, 1936
FriOI	GRGCYC	2 cut(s)	1387, 2419
GlaI	GCGC	4 cut(s)	749, 1806, 3480, 4021
GsaI	CCCAGC	2 cut(s)	224, 3327
GsuI	CTGGAG	4 cut(s)	552, 1829, 2009, 2900
HaeII	RGCGCY	2 cut(s)	1808, 3482
HaeIII	GGCC	6 cut(s)	1112, 1502, 1928, 1991, 3076, 3442
HapII	CCGG	5 cut(s)	1113, 1462, 1499, 2976, 3208
HgaI	GACGC	3 cut(s)	1479, 1632, 3371
HhaI	GCGC	4 cut(s)	750, 1807, 3481, 4022
Hin1I	GRCGYC	2 cut(s)	861, 2734
Hin6I	GCGC	4 cut(s)	748, 1805, 3479, 4020
HinP1I	GCGC	4 cut(s)	748, 1805, 3479, 4020
HincII	GTYRAC	4 cut(s)	1186, 2546, 2612, 3361
HindII	GTYRAC	4 cut(s)	1186, 2546, 2612, 3361
HindIII	AAGCTT	3 cut(s)	572, 998, 3968
HpaII	CCGG	5 cut(s)	1113, 1462, 1499, 2976, 3208
HphI	GGTGA	7 cut(s)	774, 1441, 1493, 1742, 1807, 2209, 3949
Hpy99I	CGWCG	2 cut(s)	1648, 2613
HpyCH4IV	ACGT	7 cut(s)	753, 861, 1942, 2629, 2734, 2821, 2893
HpyF10VI	GCNNNNNNNGC	8 cut(s)	992, 1572, 2048, 2057, 2299, 3108, 3485, 4017
HpySE526I	ACGT	7 cut(s)	753, 861, 1942, 2629, 2734, 2821, 2893
Hsp92I	GRCGYC	2 cut(s)	861, 2734
HspAI	GCGC	4 cut(s)	748, 1805, 3479, 4020
KpnI	GGTACC	1 cut(s)	2480
Ksp22I	TGATCA	3 cut(s)	88, 1777, 2409
LguI	GCTCTTC	1 cut(s)	2424
LmnI	GCTCC	7 cut(s)	425, 1330, 1441, 2028, 3073, 3210, 3476
LweI	GCATC	6 cut(s)	2123, 2746, 2768, 3226, 3277, 3904
MaeII	ACGT	7 cut(s)	753, 861, 1942, 2629, 2734, 2821, 2893
MflI	RGATCY	9 cut(s)	1097, 1405, 1418, 2162, 2238, 2833, 3172, 3843, 4097
MhlI	GDGCHC	6 cut(s)	882, 1387, 2419, 2827, 3393, 3820
MlsI	TGGCCA	1 cut(s)	1928
MluNI	TGGCCA	1 cut(s)	1928
MlyI	GAGTC	9 cut(s)	77, 701, 767, 1261, 1721, 2004, 2551, 2936, 2966
MmeI	TCCRAC	4 cut(s)	256, 447, 1075, 2229
Mox20I	TGGCCA	1 cut(s)	1928
Mph1103I	ATGCAT	1 cut(s)	2761
MroXI	GAANNNNTTC	2 cut(s)	605, 3766
MscI	TGGCCA	1 cut(s)	1928
MseI	TTAA	6 cut(s)	248, 662, 1583, 2561, 3318, 3966
MslI	CAYNNNNRTG	4 cut(s)	53, 84, 3222, 4107
Msp20I	TGGCCA	1 cut(s)	1928
MspA1I	CMGCKG	4 cut(s)	40, 348, 1895, 3901
MspCI	CTTAAG	1 cut(s)	3965
MspI	CCGG	5 cut(s)	1113, 1462, 1499, 2976, 3208
Mva1269I	GAATGC	1 cut(s)	3946
MvaI	CCWGG	9 cut(s)	111, 261, 329, 457, 1070, 1416, 1863, 2642, 3305
MvnI	CGCG	1 cut(s)	748
MwoI	GCNNNNNNNGC	8 cut(s)	992, 1572, 2048, 2057, 2299, 3108, 3485, 4017
NciI	CCSGG	3 cut(s)	1462, 1463, 3209
NcoI	CCATGG	1 cut(s)	54
NlaIV	GGNNCC	6 cut(s)	1312, 1413, 1437, 2024, 2478, 2804
NmeAIII	GCCGAG	2 cut(s)	2291, 3839
NmuCI	GTSAC	9 cut(s)	548, 850, 1453, 1481, 1813, 3104, 3123, 3341, 3611
NsiI	ATGCAT	1 cut(s)	2761
NspI	RCATGY	1 cut(s)	2100
NspV	TTCGAA	2 cut(s)	1012, 1978
PaeR7I	CTCGAG	2 cut(s)	1430, 3398
PagI	TCATGA	2 cut(s)	1318, 2145
PceI	AGGCCT	1 cut(s)	3076
PciI	ACATGT	1 cut(s)	2096
PciSI	GCTCTTC	1 cut(s)	2424
PctI	GAATGC	1 cut(s)	3946
PdmI	GAANNNNTTC	2 cut(s)	605, 3766
PflFI	GACNNNGTC	1 cut(s)	2255
PfoI	TCCNGGA	2 cut(s)	109, 3207
PleI	GAGTC	9 cut(s)	76, 701, 767, 1261, 1720, 2003, 2550, 2935, 2965
PpsI	GAGTC	9 cut(s)	76, 701, 767, 1261, 1720, 2003, 2550, 2935, 2965
Ppu21I	YACGTR	2 cut(s)	754, 2894
PpuMI	RGGWCCY	3 cut(s)	257, 1637, 3089
PscI	ACATGT	1 cut(s)	2096
PsiI	TTATAA	1 cut(s)	1904
Psp124BI	GAGCTC	1 cut(s)	2419
Psp5II	RGGWCCY	3 cut(s)	257, 1637, 3089
Psp6I	CCWGG	9 cut(s)	109, 259, 327, 455, 1068, 1414, 1861, 2640, 3303
PspEI	GGTNACC	2 cut(s)	632, 1813
PspFI	CCCAGC	2 cut(s)	220, 3323
PspGI	CCWGG	9 cut(s)	109, 259, 327, 455, 1068, 1414, 1861, 2640, 3303
PspN4I	GGNNCC	6 cut(s)	1312, 1413, 1437, 2024, 2478, 2804
PspPI	GGNCC	9 cut(s)	238, 257, 302, 1411, 1496, 1531, 1637, 2251, 3089
PspPPI	RGGWCCY	3 cut(s)	257, 1637, 3089
PspXI	VCTCGAGB	1 cut(s)	1430
PstI	CTGCAG	2 cut(s)	2212, 3113
PstNI	CAGNNNCTG	2 cut(s)	1868, 1898
PsuI	RGATCY	9 cut(s)	1097, 1405, 1418, 2162, 2238, 2833, 3172, 3843, 4097
PsyI	GACNNNGTC	1 cut(s)	2255
PvuII	CAGCTG	2 cut(s)	40, 348
RsaI	GTAC	5 cut(s)	344, 764, 2478, 3593, 4056
RsaNI	GTAC	5 cut(s)	343, 763, 2477, 3592, 4055
RseI	CAYNNNNRTG	4 cut(s)	53, 84, 3222, 4107
SacI	GAGCTC	1 cut(s)	2419
SalI	GTCGAC	2 cut(s)	1184, 2610
SapI	GCTCTTC	1 cut(s)	2424
SaqAI	TTAA	6 cut(s)	248, 662, 1583, 2561, 3318, 3966
Sau96I	GGNCC	9 cut(s)	238, 257, 302, 1411, 1496, 1531, 1637, 2251, 3089
ScaI	AGTACT	2 cut(s)	764, 4056
SchI	GAGTC	9 cut(s)	77, 701, 767, 1261, 1721, 2004, 2551, 2936, 2966
SduI	GDGCHC	6 cut(s)	882, 1387, 2419, 2827, 3393, 3820
SfaNI	GCATC	6 cut(s)	2123, 2746, 2768, 3226, 3277, 3904
SfcI	CTRYAG	3 cut(s)	766, 2208, 3109
Sfr274I	CTCGAG	2 cut(s)	1430, 3398
SfuI	TTCGAA	2 cut(s)	1012, 1978
SinI	GGWCC	9 cut(s)	238, 257, 302, 1411, 1496, 1531, 1637, 2251, 3089
SlaI	CTCGAG	2 cut(s)	1430, 3398
SmaI	CCCGGG	1 cut(s)	1463
SmiMI	CAYNNNNRTG	4 cut(s)	53, 84, 3222, 4107
SmlI	CTYRAG	6 cut(s)	1269, 1430, 2182, 3386, 3398, 3965
SmoI	CTYRAG	6 cut(s)	1269, 1430, 2182, 3386, 3398, 3965
SnaBI	TACGTA	1 cut(s)	2894
SpeI	ACTAGT	2 cut(s)	1090, 3736
SseBI	AGGCCT	1 cut(s)	3076
SsiI	CCGC	5 cut(s)	1576, 1895, 3901, 3944, 4074
SspI	AATATT	1 cut(s)	2908
SstI	GAGCTC	1 cut(s)	2419
StuI	AGGCCT	1 cut(s)	3076
StyI	CCWWGG	5 cut(s)	54, 1179, 2516, 3071, 3228
TaiI	ACGT	7 cut(s)	756, 864, 1945, 2632, 2737, 2824, 2896
TatI	WGTACW	4 cut(s)	342, 762, 3591, 4054
TauI	GCSGC	2 cut(s)	1578, 1898
Tru1I	TTAA	6 cut(s)	248, 662, 1583, 2561, 3318, 3966
Tru9I	TTAA	6 cut(s)	248, 662, 1583, 2561, 3318, 3966
TseFI	GTSAC	9 cut(s)	548, 850, 1453, 1481, 1813, 3104, 3123, 3341, 3611
Tsp45I	GTSAC	9 cut(s)	548, 850, 1453, 1481, 1813, 3104, 3123, 3341, 3611
TspGWI	ACGGA	6 cut(s)	1523, 2175, 2730, 2795, 3156, 3170
TspMI	CCCGGG	1 cut(s)	1461
Tth111I	GACNNNGTC	1 cut(s)	2255
Vha464I	CTTAAG	1 cut(s)	3965
VpaK11BI	GGWCC	9 cut(s)	238, 257, 302, 1411, 1496, 1531, 1637, 2251, 3089
XbaI	TCTAGA	2 cut(s)	410, 1393
XceI	RCATGY	1 cut(s)	2100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	832
XhoI	CTCGAG	2 cut(s)	1430, 3398
XmaI	CCCGGG	1 cut(s)	1461
XmiI	GTMKAC	3 cut(s)	1185, 2611, 3498
XmnI	GAANNNNTTC	2 cut(s)	605, 3766
ZraI	GACGTC	2 cut(s)	862, 2735
ZrmI	AGTACT	2 cut(s)	764, 4056
Zsp2I	ATGCAT	1 cut(s)	2761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.