Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003250

Physical Location & Seq

Genomic Coordinates Reverse (-)

61204187 .. 61210124

Gene Structure 5938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0494800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4437 bp

ATGAAAGCACCATTTGAAATGGGGAAGATTTCTCTGCATCTTTTGGGTATCCAACCAGAATGTGCTGAATCTTCCGCAAGTCTTTCACTTTCAGTTTGGATAGACTCTAAAGACACCACCTTTGAATCTAATTTGAAAGGCCACCCTCCCAATTTGCTACCTTTATCTAATCTCTGTAGAGATGAGGGATTCATTCAATATCAAAATGCTGATGCATGCATGACATTTGATATTCATGTAAGGCTTCAGAGGATTTCCTTGATGACCATGGCACGAAACGCGACTATCCCAAAAAATGTGGGTGTGGTTCTTGACTTGGATACCTCTTTTGGGAAAATTGGGCTGAGCTGCATCAAAATGACCCTCTCTGACTTCTATGCCGCTCATGCTTACTGTTGTACTAGGCTCGTCCTACACACGAGGGACTCCACAAGAGATGTTGTTGTTGCAGCTGGTGCAGCTCTGGATTTAATAAACAATGTTAAAGTTGAAGCCATAATAGGGCCAGAATCATCAAAGCAAAGCGACTTTATCATAGAATTTGGTGAAAAAGCTCAGGTGCCCATAATCTCATTTTCAGCAACAAGTCCTTACCTTCAGAGTTCATATTTCATCCGAATTGCACAAAATGACTATCTGAATGTAGACAACGAGTTTGGGAAGGGAGTAATACCTTATCTGATTACTGCTTTGCAAGCAGTTGATGCTCGCATCCCCTACTGGAGTGTCATTCCTTCAACAGCCACTTATCCCCAAATTTGTGAAGAGCTTATCAAGTTGTCATCTTTGGACTCTAGAATCTTCATAGTGCACATGTTGCCTGTTCTTGGCTCTCGATTTTTTGCTGTGGCAAATGAAATGAAGATGATGGAGGGAGGATTTGTTTGGATAGTGACTAATGAGATGGCTGACTTTCTTAGTTCCTCAAATTCTATTGTCATAGATAACATGCAAGGGGTATTGGGTTTGAAGGCTTATGTTCCACGTACAGAAAAGCTTGAAGATTTTAGAGACAGATGGCAAAGGAGATTCCAACAAGACAATCCAACTCTCCTTAATGTTAAATTGGATGTCTTTGGACTGTGGGCTTATGATGCTGCTTGGGCACTAGCTATGGCGGTTGAGAAGGTTGAGACTACGAACTATCACTTCCAAAACATCAACATTTCTGGTAGTCACTCTGGTCAAGAAAGATTGGAGGTCACTCGGAGTGATCCTAAACTCATCCAAGAACTATCGGTACAGTATTCACTATTCAGAGGACTTTCAGGAGTATTTAGTCTCATAAATGGGCAACTACAATCGTCAAAGTTTCAGGTTGATAATGTGAATGACAATGGGGAAAGACGGGTTGGATATTGGACACCCCAATATGGACTTGTAAGAAACCTCAACTTAAAAGACCCAGGCAGATATTCTGATTCTAATACCAAACTTGGAACTATTATATGGCCCGGAGACACCACCTCAGTTCTGAAGAGTTGGGTGTTTCCTGATTCTGGGAGACAACTGAAAATTCTAGTCCCGGTGAAGAAAAGTTTCAGAGAATTTGTGAATATAGCATTTCATCCTGAGACTGGCTCAACTGCTTCCAGTGGATACTGCATAGAAGTCTTCGCAGCTGTATTAAACTTATTACCATACGGTGTCCCTTACAAATTTTATCCATTTGCAAAGACTGATGGTGAGAGTGCTGGTCCTTACTATGATTTGGTTCATCAAGTGTTTATTGGGAACTATGATGCTGCAGTAGGTGATATAACCATTAGAGCAAGTTTTGTAACTGAACTTGGAGATAAAGCACAGGTTATCATAATCTCATTTTCAGCTACAAGCTCTTCCCTTCATAGTTCATATTTTATCCGAATTGCACAAAATGACGCATCTCAAGTGAAAGCCATAAGCGACCTTATCCAAGCCTTTAGTTGGAGTGAAGCAGTGCCCATCAGCGTTGACAACGAGTTTGGGAAGGGAATGATACCATATCTGACTACTGCTTTGCAAGCCATTGGTGCTCGCGTCCCCTACTGGGCTGTCATTCCTTCACTGGCCACTGCTGACCAAATAGATGAAGAGCTTGAGAAGTTGATGAAAATGCAAACTAGGGTCTTCATAGTGCATATGTTGCCTTCACTTGGCTCTCGACTTTTTGCAAGGGCAAAAAGGTTGGGAATGATGGATGAAGGCTTTGCATGGATGATTACAAATGGGATGGCTAACTATTTCAGTTCCGTAAATTTGTCTTTCATAAATGACATGAATGGGGTGTTGGGTTTAAAGGCTTATGTTCCCAAAACGAAAGAGCTCGGAAATTTTAGGGCTAGATGGCAAAGGAACTTCCAACAAGACAATTCAACTCTCCCCAGTGTCAATTTGGATGTTTTTGGATTCTGGGCCTATGATGCTGCTTGGCCACTAGCCATGGCAGTTGAAAAGGGTGACACTGCAAGCTTCAAGTTCCAAAACACGAACATTGCTGGTAGTTCCACTGGTTTAGAAAGATTGGAGATCTCTCTAAGTGGCCCTGAACTTGTCCGAGAATTATCAAGTACAAGGTTCATAGGAATTGCAGGAGATTTCAGTCTTCTTGATGGGCAACTACAGTCATCAACTTTTGAGGTGGTTAATGTGAACAATAATGGGGAAAGAGGAATTGGATATTGGACACCTCGAAATGGATTTGTACGAAACTTAAATTCAAAAAACGCAAGCATATATTCTACTTCCAATGCCAGTCTTGGTCCTATTATATGGCCGGGGGAGACCACCTCGGCTCCAAAAGGTTGGGAGATTCCTACTGGGGCAAAACTGAAGATTCTAATCCCGGTGAAGACAGGTTTTACAGAATTTGTAGAAATAAGTACCGATTCAAACACTCACACAACTGATATCACTGGATACTGCATAGAAGTCTTTAATGCTGTAATAAAATCATTACCATTCCCTGTTCCTTATGAGTTTCATCCCTTTGCAAAGCCTAATGGTGAGAGCACCGGTAGTTACATTGATTTACTTGATCAAGTGTTTCTTGGGAATTATGATGCTGCAGTTGGAGACATAACCATCAGAGCAAATAGATCTTTATATGTTGACTTTACATTACCATATACAGAATCTGGGATATCAATGATAGTGCCTATCAAAGATCATAAAGTTGCTAAAACCACATGGGTGTTCTTGAAGCCTTTCACTGGAACTTTGGGTAACAAGCGGTTGTTTTTTCATATTCATTGGTTTTGTAGTCTGGGTTCTCGAACATCGGATAAACGAAGACTTTCGGGGGCCTCCACGTCCCCAAATGGGCACAAGCTTGTGGTACTCCTTCTCAACCATGGTTTTTGCACACCATACCATAACAGCAACATTTTTTATTTTTTTGGGGAGCGAGTAGTGAGCAACTTGGCTAGGTTTGTCGTGATCACATGGTGCTTTGTAGTTCTCATACTGACTCAAAGTTACACTGCCAGTTTCAGCTCAATTTTGACAGTTCAACAGCTCCAAAAGAACATTTCCGATGTAAACCAGCTCCTGAAGAATGGGGACACTGTTGGCTACCAAACAGCGTCTTTTGTTTATGGGATTTTGAGGCAACTAGGATTTCAGGATGAAAAACTTAAGACCTATAATTCCCCAGAAGAATTGAATGAACTCTTTCAAAATGGGAGTGAAAATAATGGTATTACTGCTGCTTTTGATGAAACCCCCTACATGAAACTGTTTCTTGCAATTTATTGCTCAAAGTATACCATAGTTGAGCCAACATTTAAAGCTAATGGCTTTGCCTTTGTAAGTTCACTTGCTGTTTTATCTGTTTTCTTGGCCTCTGCTTTCCTCGAGTACATGTTTTCTCATTTCGGAAGTGACTTGCAGGCCTTCCAAAAAGGTTCACTCCTCACACGTTATGTTTCAAGGGAAATCGAGAGAACTGACATGACGAAAATTGAGGGAAAATGGTTTACAAGTTGTTCAAACTCCACCTCAGGGGACTCTTCCAGCAATCTTACTCTAACGGTTGATAACTTTTGGGGGCTCTTTATCATTGCTGGGGTTGCTTCATCATTAGCTCTCCTCATATTTGCAGCCATGTTCTTTTATGAGCACAGGCACACCTTACTGAACCTTGATCCAGAAACCACATTTTGGGGAAGAATTCGTGCGATATTGAGGATATATGATCGAAGAGACCCCACTTCGCACACTTATAACGGGAGAGGACTGCAAGATCCTGTTCATGGTCTAAGTGCAGTTGAATCCTTACCAGACACTAATTCTTCCACGAGGGCATCAAGTGCGAACCGCATTGACTCACACATTGATCTTGAACAGCATGTCCGGACTGAGCATGCTGACTTGAATCCCAACACTCAAGCAACCCAAGAGATTGAAGATGCAATTGACTTGACCTCCTCCAGTGAACAGAGGCCAGTGCCTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008138 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010468 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019538 GO:0030865 GO:0031122 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0097305 GO:0097435 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Act-Frag_cataly DSPc

Protein Analysis

1478

Amino Acids

164.67

Weight (kDa)

5.93

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	117 - 212	2.4e-16	Receptor family ligand binding region
ANF_receptor	PF01094	215 - 445	1.5e-30	Receptor family ligand binding region
ANF_receptor	PF01094	591 - 879	6.8e-53	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	956 - 1046	3e-09	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	1128 - 1351	1.8e-20	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23720 AT5G23720 AT5G23720
fragaria_vesca	FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220
malus_domestica	MD06G1132400.v1.1 MD14G1148800.v1.1
prunus_persica	Prupe.5G143400_v2.0.a1
pyrus_communis	pycom06g12400 pycom14g12360
rosa_chinensis	RchiOBHm_Chr4g0416471 RchiOBHm_Chr7g0188941 RchiOBHm_Chr7g0194331
rosa_laevigata	RLG00000004049 RLG00000004648
rosa_multiflora	Rmu_co8071116.1_g000001 Rmu_sc0007831.1_g000001 Rmu_sc0032883.1_g000001 Rmu_ssc0000113.1_g000006
rosa_roxburghii	Rroxscaffold_3G00265920
rosa_rugosa	Rorug06G0494800 Rorug06G0494900 Rorug06G0495000
rosa_samantha	Rh7AG099700 Rh7BG101800 Rh7CG103100 Rh7CG146600 Rh7DG101600 Rh7DG144200
rosa_wichuraiana	Rw7G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4203
AccB1I	GGYRCC	1 cut(s)	559
AccB7I	CCANNNNNTGG	1 cut(s)	4140
AccBSI	CCGCTC	1 cut(s)	383
AccI	GTMKAC	2 cut(s)	645, 3743
AccII	CGCG	2 cut(s)	281, 2019
AccIII	TCCGGA	1 cut(s)	4332
AciI	CCGC	5 cut(s)	75, 381, 1118, 3211, 4297
AclWI	GGATC	3 cut(s)	1208, 4118, 4217
AcoI	YGGCCR	3 cut(s)	2049, 2411, 2753
AcuI	CTGAAG	5 cut(s)	230, 581, 1496, 2831, 3551
AdeI	CACNNNGTG	1 cut(s)	3426
AfaI	GTAC	8 cut(s)	400, 988, 1242, 2551, 2685, 2863, 3318, 3839
AflII	CTTAAG	1 cut(s)	3614
AflIII	ACRYGT	3 cut(s)	813, 3840, 3896
AgeI	ACCGGT	1 cut(s)	2993
AjiI	CACGTC	1 cut(s)	3291
AjnI	CCWGG	1 cut(s)	1405
AjuI	GAANNNNNNNTTGG	8 cut(s)	1335, 1367, 2252, 2284, 2637, 2644, 2669, 2676
AleI	CACNNNNGTG	1 cut(s)	3170
AloI	GAACNNNNNNTCC	2 cut(s)	4314, 4346
Alw21I	GWGCWC	5 cut(s)	813, 2017, 2307, 2993, 4101
Alw26I	GTCTC	9 cut(s)	1005, 1127, 1286, 1452, 1498, 1568, 2756, 3048, 4176
Alw44I	GTGCAC	1 cut(s)	809
AlwI	GGATC	3 cut(s)	1208, 4118, 4217
AlwNI	CAGNNNCTG	2 cut(s)	3116, 3529
Ama87I	CYCGRG	1 cut(s)	3833
Aor13HI	TCCGGA	1 cut(s)	4332
ApaLI	GTGCAC	1 cut(s)	809
ArsI	GACNNNNNNTTYG	8 cut(s)	104, 136, 638, 670, 1946, 1978, 1981, 2013
AsiGI	ACCGGT	1 cut(s)	2993
Asp700I	GAANNNNTTC	4 cut(s)	1538, 3185, 3274, 3651
AspS9I	GGNCC	7 cut(s)	503, 1452, 1697, 2394, 2522, 2741, 3282
AsuC2I	CCSGG	4 cut(s)	1455, 1526, 2757, 2825
AsuHPI	GGTGA	7 cut(s)	557, 1540, 1697, 1766, 2450, 2839, 2996
AvaI	CYCGRG	1 cut(s)	3833
AvaII	GGWCC	2 cut(s)	1697, 2741
AxyI	CCTNAGG	1 cut(s)	3979
BaeGI	GKGCMC	5 cut(s)	564, 813, 1108, 1944, 3306
BalI	TGGCCA	2 cut(s)	2051, 2413
BanI	GGYRCC	1 cut(s)	559
BanII	GRGCYC	2 cut(s)	2307, 4032
BauI	CACGAG	2 cut(s)	418, 4276
BbsI	GAAGAC	5 cut(s)	1606, 2101, 2576, 2837, 3277
Bbv12I	GWGCWC	5 cut(s)	813, 2017, 2307, 2993, 4101
BciT130I	CCWGG	1 cut(s)	1407
BciVI	GTATCC	4 cut(s)	59, 313, 1592, 2891
BclI	TGATCA	2 cut(s)	3016, 3417
BcnI	CCSGG	4 cut(s)	1455, 1526, 2757, 2825
BcoDI	GTCTC	9 cut(s)	1005, 1127, 1286, 1452, 1498, 1568, 2756, 3048, 4176
BfaI	CTAG	9 cut(s)	402, 795, 1109, 1520, 2103, 2322, 2417, 3405, 3593
BfmI	CTRYAG	4 cut(s)	175, 1746, 2600, 3045
BfrI	CTTAAG	1 cut(s)	3614
BfuI	GTATCC	4 cut(s)	59, 313, 1592, 2891
BglII	AGATCT	2 cut(s)	2508, 3077
BlpI	GCTNAGC	1 cut(s)	344
Bme1390I	CCNGG	5 cut(s)	1407, 1455, 1526, 2757, 2825
Bme18I	GGWCC	2 cut(s)	1697, 2741
BmeT110I	CYCGRG	1 cut(s)	3833
BmgBI	CACGTC	1 cut(s)	3291
BmgT120I	GGNCC	7 cut(s)	503, 1452, 1697, 2394, 2522, 2741, 3282
BmiI	GGNNCC	3 cut(s)	561, 2775, 3283
BmrFI	CCNGG	5 cut(s)	1407, 1455, 1526, 2757, 2825
BmrI	ACTGGG	3 cut(s)	2038, 2358, 2808
BmuI	ACTGGG	3 cut(s)	2038, 2358, 2808
BpiI	GAAGAC	5 cut(s)	1606, 2101, 2576, 2837, 3277
BplI	GAGNNNNNCTC	4 cut(s)	1565, 1597, 2753, 2785
BpmI	CTGGAG	2 cut(s)	742, 4393
Bpu10I	CCTNAGC	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	344
BpuEI	CTTGAG	3 cut(s)	1872, 2099, 4350
BpuMI	CCSGG	4 cut(s)	1455, 1526, 2757, 2825
BsaAI	YACGTR	1 cut(s)	986
BsaBI	GATNNNNATC	1 cut(s)	2819
BsaI	GGTCTC	2 cut(s)	2756, 4176
BsaJI	CCNNGG	6 cut(s)	267, 1405, 2421, 2756, 2769, 3331
BsaWI	WCCGGW	2 cut(s)	2993, 4332
BsaXI	ACNNNNNCTCC	6 cut(s)	867, 897, 2758, 2788, 4388, 4418
Bse118I	RCCGGY	1 cut(s)	2993
Bse21I	CCTNAGG	1 cut(s)	3979
Bse3DI	GCAATG	2 cut(s)	2472, 4038
Bse8I	GATNNNNATC	1 cut(s)	2819
BseAI	TCCGGA	1 cut(s)	4332
BseBI	CCWGG	1 cut(s)	1407
BseDI	CCNNGG	6 cut(s)	267, 1405, 2421, 2756, 2769, 3331
BseJI	GATNNNNATC	1 cut(s)	2819
BseMI	GCAATG	2 cut(s)	2472, 4038
BseMII	CTCAG	6 cut(s)	335, 569, 1482, 1563, 3993, 4329
BseRI	GAGGAG	3 cut(s)	3881, 4058, 4396
BseSI	GKGCMC	5 cut(s)	564, 813, 1108, 1944, 3306
BseYI	CCCAGC	1 cut(s)	4043
BsgI	GTGCAG	2 cut(s)	477, 4263
Bsh1236I	CGCG	2 cut(s)	281, 2019
BshNI	GGYRCC	1 cut(s)	559
BshTI	ACCGGT	1 cut(s)	2993
BsiHKAI	GWGCWC	5 cut(s)	813, 2017, 2307, 2993, 4101
BsiHKCI	CYCGRG	1 cut(s)	3833
BsiSI	CCGG	6 cut(s)	1455, 1526, 2756, 2825, 2994, 4333
BslFI	GGGAC	7 cut(s)	437, 1508, 1634, 2006, 3277, 3554, 3998
BsmAI	GTCTC	9 cut(s)	1005, 1127, 1286, 1452, 1498, 1568, 2756, 3048, 4176
BsmFI	GGGAC	7 cut(s)	437, 1508, 1634, 2006, 3277, 3554, 3998
Bso31I	GGTCTC	2 cut(s)	2756, 4176
BsoBI	CYCGRG	1 cut(s)	3833
Bsp13I	TCCGGA	1 cut(s)	4332
Bsp1720I	GCTNAGC	1 cut(s)	344
Bsp19I	CCATGG	3 cut(s)	267, 2421, 3331
BspACI	CCGC	5 cut(s)	75, 381, 1118, 3211, 4297
BspCNI	CTCAG	6 cut(s)	336, 568, 1481, 1564, 3992, 4330
BspEI	TCCGGA	1 cut(s)	4332
BspFNI	CGCG	2 cut(s)	281, 2019
BspLI	GGNNCC	3 cut(s)	561, 2775, 3283
BspMAI	CTGCAG	2 cut(s)	1750, 3049
BspPI	GGATC	3 cut(s)	1208, 4118, 4217
BspQI	GCTCTTC	3 cut(s)	759, 1843, 2067
BspT107I	GGYRCC	1 cut(s)	559
BspTI	CTTAAG	1 cut(s)	3614
BspTNI	GGTCTC	2 cut(s)	2756, 4176
BsrBI	CCGCTC	1 cut(s)	383
BsrDI	GCAATG	2 cut(s)	2472, 4038
BsrFI	RCCGGY	1 cut(s)	2993
BssAI	RCCGGY	1 cut(s)	2993
BssECI	CCNNGG	6 cut(s)	267, 1405, 2421, 2756, 2769, 3331
BssNAI	GTATAC	1 cut(s)	3744
BssSI	CACGAG	2 cut(s)	418, 4276
BssT1I	CCWWGG	3 cut(s)	267, 2421, 3331
Bst1107I	GTATAC	1 cut(s)	3744
Bst2BI	CACGAG	2 cut(s)	418, 4276
Bst2UI	CCWGG	1 cut(s)	1407
Bst4CI	ACNGT	9 cut(s)	395, 1083, 1245, 1646, 2604, 3487, 3547, 3717, 4012
Bst6I	CTCTTC	6 cut(s)	759, 1472, 1843, 2067, 3994, 4174
BstAFI	CTTAAG	1 cut(s)	3614
BstAPI	GCANNNNNTGC	5 cut(s)	455, 704, 817, 2125, 4289
BstBAI	YACGTR	1 cut(s)	986
BstC8I	GCNNGC	9 cut(s)	217, 696, 709, 2004, 2017, 2449, 2710, 3870, 4344
BstDEI	CTNAG	9 cut(s)	344, 555, 917, 1468, 1572, 2516, 3979, 4238, 4338
BstDSI	CCRYGG	3 cut(s)	267, 2421, 3331
BstFNI	CGCG	2 cut(s)	281, 2019
BstMAI	GTCTC	9 cut(s)	1005, 1127, 1286, 1452, 1498, 1568, 2756, 3048, 4176
BstNI	CCWGG	1 cut(s)	1407
BstNSI	RCATGY	6 cut(s)	219, 817, 952, 3844, 4331, 4346
BstSCI	CCNGG	5 cut(s)	1405, 1453, 1524, 2755, 2823
BstSFI	CTRYAG	4 cut(s)	175, 1746, 2600, 3045
BstSLI	GKGCMC	5 cut(s)	564, 813, 1108, 1944, 3306
BstUI	CGCG	2 cut(s)	281, 2019
BstV2I	GAAGAC	5 cut(s)	1606, 2101, 2576, 2837, 3277
BstX2I	RGATCY	3 cut(s)	2508, 3077, 4222
BstXI	CCANNNNNNTGG	1 cut(s)	2784
BstYI	RGATCY	3 cut(s)	2508, 3077, 4222
BstZ17I	GTATAC	1 cut(s)	3744
Bsu36I	CCTNAGG	1 cut(s)	3979
BsuI	GTATCC	4 cut(s)	59, 313, 1592, 2891
BtgI	CCRYGG	3 cut(s)	267, 2421, 3331
BtrI	CACGTC	1 cut(s)	3291
BtsI	GCAGTG	4 cut(s)	1944, 2052, 2442, 3459
Cac8I	GCNNGC	9 cut(s)	217, 696, 709, 2004, 2017, 2449, 2710, 3870, 4344
CaiI	CAGNNNCTG	2 cut(s)	3116, 3529
Cfr10I	RCCGGY	1 cut(s)	2993
Cfr13I	GGNCC	7 cut(s)	503, 1452, 1697, 2394, 2522, 2741, 3282
CseI	GACGC	3 cut(s)	1889, 2008, 3552
Csp6I	GTAC	8 cut(s)	399, 987, 1241, 2550, 2684, 2862, 3317, 3838
CspAI	ACCGGT	1 cut(s)	2993
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviQI	GTAC	8 cut(s)	399, 987, 1241, 2550, 2684, 2862, 3317, 3838
DdeI	CTNAG	9 cut(s)	344, 555, 917, 1468, 1572, 2516, 3979, 4238, 4338
DraI	TTTAAA	2 cut(s)	2277, 3766
DraIII	CACNNNGTG	1 cut(s)	3426
EaeI	YGGCCR	3 cut(s)	2049, 2411, 2753
Eam1104I	CTCTTC	6 cut(s)	759, 1472, 1843, 2067, 3994, 4174
EarI	CTCTTC	6 cut(s)	759, 1472, 1843, 2067, 3994, 4174
Ecl136II	GAGCTC	1 cut(s)	2305
Eco130I	CCWWGG	3 cut(s)	267, 2421, 3331
Eco147I	AGGCCT	1 cut(s)	3872
Eco24I	GRGCYC	2 cut(s)	2307, 4032
Eco31I	GGTCTC	2 cut(s)	2756, 4176
Eco32I	GATATC	2 cut(s)	2890, 3123
Eco47I	GGWCC	2 cut(s)	1697, 2741
Eco53kI	GAGCTC	1 cut(s)	2305
Eco57I	CTGAAG	5 cut(s)	230, 581, 1496, 2831, 3551
Eco81I	CCTNAGG	1 cut(s)	3979
Eco88I	CYCGRG	1 cut(s)	3833
EcoICRI	GAGCTC	1 cut(s)	2305
EcoO109I	RGGNCCY	1 cut(s)	3282
EcoRI	GAATTC	1 cut(s)	4149
EcoRII	CCWGG	1 cut(s)	1405
EcoRV	GATATC	2 cut(s)	2890, 3123
EcoT14I	CCWWGG	3 cut(s)	267, 2421, 3331
EcoT22I	ATGCAT	2 cut(s)	217, 221
EcoT38I	GRGCYC	2 cut(s)	2307, 4032
ErhI	CCWWGG	3 cut(s)	267, 2421, 3331
FalI	AAGNNNNNCTT	2 cut(s)	3012, 3044
FaqI	GGGAC	7 cut(s)	437, 1508, 1634, 2006, 3277, 3554, 3998
FauNDI	CATATG	1 cut(s)	2121
FbaI	TGATCA	2 cut(s)	3016, 3417
FblI	GTMKAC	2 cut(s)	645, 3743
FriOI	GRGCYC	2 cut(s)	2307, 4032
FspBI	CTAG	9 cut(s)	402, 795, 1109, 1520, 2103, 2322, 2417, 3405, 3593
GsaI	CCCAGC	1 cut(s)	4047
GsuI	CTGGAG	2 cut(s)	742, 4393
HapII	CCGG	6 cut(s)	1455, 1526, 2756, 2825, 2994, 4333
HgaI	GACGC	3 cut(s)	1889, 2008, 3552
HincII	GTYRAC	2 cut(s)	1954, 3091
HindII	GTYRAC	2 cut(s)	1954, 3091
HindIII	AAGCTT	3 cut(s)	995, 2449, 3308
HpaII	CCGG	6 cut(s)	1455, 1526, 2756, 2825, 2994, 4333
HphI	GGTGA	7 cut(s)	557, 1540, 1697, 1766, 2450, 2839, 2996
HpyCH4III	ACNGT	9 cut(s)	395, 1083, 1245, 1646, 2604, 3487, 3547, 3717, 4012
HpyCH4IV	ACGT	3 cut(s)	985, 3290, 3898
HpyF3I	CTNAG	9 cut(s)	344, 555, 917, 1468, 1572, 2516, 3979, 4238, 4338
HpySE526I	ACGT	3 cut(s)	985, 3290, 3898
Kpn2I	TCCGGA	1 cut(s)	4332
Ksp22I	TGATCA	2 cut(s)	3016, 3417
LguI	GCTCTTC	3 cut(s)	759, 1843, 2067
LmnI	GCTCC	4 cut(s)	2779, 3382, 3501, 3531
MaeI	CTAG	9 cut(s)	402, 795, 1109, 1520, 2103, 2322, 2417, 3405, 3593
MaeII	ACGT	3 cut(s)	985, 3290, 3898
MaeIII	GTNAC	9 cut(s)	892, 1175, 1201, 1780, 2438, 2999, 3203, 3455, 3860
MbiI	CCGCTC	1 cut(s)	383
MfeI	CAATTG	1 cut(s)	4392
MflI	RGATCY	3 cut(s)	2508, 3077, 4222
MlsI	TGGCCA	2 cut(s)	2051, 2413
MluNI	TGGCCA	2 cut(s)	2051, 2413
MlyI	GAGTC	6 cut(s)	98, 419, 785, 3442, 3980, 4298
MmeI	TCCRAC	7 cut(s)	76, 1057, 1070, 1333, 1907, 2365, 3031
Mox20I	TGGCCA	2 cut(s)	2051, 2413
Mph1103I	ATGCAT	2 cut(s)	217, 221
MroI	TCCGGA	1 cut(s)	4332
MroXI	GAANNNNTTC	4 cut(s)	1538, 3185, 3274, 3651
MscI	TGGCCA	2 cut(s)	2051, 2413
MslI	CAYNNNNRTG	2 cut(s)	356, 3170
Msp20I	TGGCCA	2 cut(s)	2051, 2413
MspA1I	CMGCKG	2 cut(s)	452, 1622
MspCI	CTTAAG	1 cut(s)	3614
MspI	CCGG	6 cut(s)	1455, 1526, 2756, 2825, 2994, 4333
MspR9I	CCNGG	5 cut(s)	1407, 1455, 1526, 2757, 2825
MunI	CAATTG	1 cut(s)	4392
MvaI	CCWGG	1 cut(s)	1407
MvnI	CGCG	2 cut(s)	281, 2019
NciI	CCSGG	4 cut(s)	1455, 1526, 2757, 2825
NcoI	CCATGG	3 cut(s)	267, 2421, 3331
NdeI	CATATG	1 cut(s)	2121
NlaIV	GGNNCC	3 cut(s)	561, 2775, 3283
NmeAIII	GCCGAG	1 cut(s)	2750
NmuCI	GTSAC	5 cut(s)	892, 1175, 1201, 2438, 3860
NsiI	ATGCAT	2 cut(s)	217, 221
NspI	RCATGY	6 cut(s)	219, 817, 952, 3844, 4331, 4346
OliI	CACNNNNGTG	1 cut(s)	3170
PaeI	GCATGC	2 cut(s)	219, 4346
PaeR7I	CTCGAG	1 cut(s)	3833
PceI	AGGCCT	1 cut(s)	3872
PciI	ACATGT	2 cut(s)	813, 3840
PciSI	GCTCTTC	3 cut(s)	759, 1843, 2067
PdmI	GAANNNNTTC	4 cut(s)	1538, 3185, 3274, 3651
PflMI	CCANNNNNTGG	1 cut(s)	4140
PinAI	ACCGGT	1 cut(s)	2993
PleI	GAGTC	6 cut(s)	98, 419, 785, 3442, 3980, 4298
PpsI	GAGTC	6 cut(s)	98, 419, 785, 3442, 3980, 4298
Ppu21I	YACGTR	1 cut(s)	986
PscI	ACATGT	2 cut(s)	813, 3840
PsiI	TTATAA	1 cut(s)	4203
Psp124BI	GAGCTC	1 cut(s)	2307
Psp6I	CCWGG	1 cut(s)	1405
PspFI	CCCAGC	1 cut(s)	4043
PspGI	CCWGG	1 cut(s)	1405
PspN4I	GGNNCC	3 cut(s)	561, 2775, 3283
PspPI	GGNCC	7 cut(s)	503, 1452, 1697, 2394, 2522, 2741, 3282
PspXI	VCTCGAGB	1 cut(s)	3833
PsrI	GAACNNNNNNTAC	4 cut(s)	1224, 1256, 3232, 3264
PstI	CTGCAG	2 cut(s)	1750, 3049
PstNI	CAGNNNCTG	2 cut(s)	3116, 3529
PsuI	RGATCY	3 cut(s)	2508, 3077, 4222
PvuII	CAGCTG	2 cut(s)	452, 1622
RsaI	GTAC	8 cut(s)	400, 988, 1242, 2551, 2685, 2863, 3318, 3839
RsaNI	GTAC	8 cut(s)	399, 987, 1241, 2550, 2684, 2862, 3317, 3838
RseI	CAYNNNNRTG	2 cut(s)	356, 3170
SacI	GAGCTC	1 cut(s)	2307
SapI	GCTCTTC	3 cut(s)	759, 1843, 2067
Sau96I	GGNCC	7 cut(s)	503, 1452, 1697, 2394, 2522, 2741, 3282
SchI	GAGTC	6 cut(s)	98, 419, 785, 3442, 3980, 4298
ScrFI	CCNGG	5 cut(s)	1407, 1455, 1526, 2757, 2825
SfcI	CTRYAG	4 cut(s)	175, 1746, 2600, 3045
Sfr274I	CTCGAG	1 cut(s)	3833
SinI	GGWCC	2 cut(s)	1697, 2741
SlaI	CTCGAG	1 cut(s)	3833
SmiMI	CAYNNNNRTG	2 cut(s)	356, 3170
SmlI	CTYRAG	5 cut(s)	1887, 2078, 3614, 3833, 4365
SmoI	CTYRAG	5 cut(s)	1887, 2078, 3614, 3833, 4365
SphI	GCATGC	2 cut(s)	219, 4346
SseBI	AGGCCT	1 cut(s)	3872
SsiI	CCGC	5 cut(s)	75, 381, 1118, 3211, 4297
SspMI	CTAG	9 cut(s)	402, 795, 1109, 1520, 2103, 2322, 2417, 3405, 3593
SstI	GAGCTC	1 cut(s)	2307
StuI	AGGCCT	1 cut(s)	3872
StyD4I	CCNGG	5 cut(s)	1405, 1453, 1524, 2755, 2823
StyI	CCWWGG	3 cut(s)	267, 2421, 3331
TaaI	ACNGT	9 cut(s)	395, 1083, 1245, 1646, 2604, 3487, 3547, 3717, 4012
TaiI	ACGT	3 cut(s)	988, 3293, 3901
TaqI	TCGA	7 cut(s)	835, 2143, 2671, 3253, 3834, 3918, 4177
TatI	WGTACW	3 cut(s)	398, 2549, 3837
TauI	GCSGC	1 cut(s)	383
TseFI	GTSAC	5 cut(s)	892, 1175, 1201, 2438, 3860
Tsp45I	GTSAC	5 cut(s)	892, 1175, 1201, 2438, 3860
TspGWI	ACGGA	1 cut(s)	2221
Van91I	CCANNNNNTGG	1 cut(s)	4140
Vha464I	CTTAAG	1 cut(s)	3614
VneI	GTGCAC	1 cut(s)	809
VpaK11BI	GGWCC	2 cut(s)	1697, 2741
XbaI	TCTAGA	1 cut(s)	794
XceI	RCATGY	6 cut(s)	219, 817, 952, 3844, 4331, 4346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2371
XhoI	CTCGAG	1 cut(s)	3833
XmiI	GTMKAC	2 cut(s)	645, 3743
XmnI	GAANNNNTTC	4 cut(s)	1538, 3185, 3274, 3651
XspI	CTAG	9 cut(s)	402, 795, 1109, 1520, 2103, 2322, 2417, 3405, 3593
Zsp2I	ATGCAT	2 cut(s)	217, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.