Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007831.1

Orthogroup ID

OG0003250

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1708

Gene Structure 1708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007831.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

gttgatgctgaaacaaacaaagaattggaacagtggaatgaaatgctaaagagcgatgcagtcaaactttgccaggagaacaattttaatgctgggttctttgagggtagtgacaataacggcgtagttgacgcttatgaattgaaggtcagacttgagcacattctcgagagaatttcattgatatctgaggctgcaaatacagagaggccatctcgaatcacaagtagcctgtttattggtggagcgcttgctgcacgatctgtatacacactgcaacgcttaggaatcactcatatattatgtttgtgttccaatgaaattggacagtcagattcccagtttcctgatctatttgagtacaaaaacttctctatatgtgacagtgaagatttcaacatcagcaacatctttgatgaagctgttgagtttattgatcgtgttgaagaaacaggagggaaggttctagtccattgctttgagggaaaaagtagaagtgctacactagtgcttgcatacctaatgctcagaaagaattccactctattagaagcatggaattctctaaagcaggttcatcgccgagcacaacccaatgatgggtttgcgaagatcttgttgaatttggataagaaactgcatggtaaagtttcaatggagtggcatcagcggaagccaatgatgaaagtttgccccatctgtggggtgaatgcgggtctgagtagcagctctcttaagcttcatttacagaaatcacataagaaactatcgtctggtagcgtggatagcgcaatgacaatggaaatacaaaaggctttgacagtactaaaaatcagtcgaggcggaagtgtcagccccacacaaagatctcattcagatgttgaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008138 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010468 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019538 GO:0030865 GO:0031122 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0097305 GO:0097435 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Act-Frag_cataly DSPc

Protein Analysis

296

Amino Acids

33.05

Weight (kDa)

6.35

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23720 AT5G23720 AT5G23720
fragaria_vesca	FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220
malus_domestica	MD06G1132400.v1.1 MD14G1148800.v1.1
prunus_persica	Prupe.5G143400_v2.0.a1
pyrus_communis	pycom06g12400 pycom14g12360
rosa_chinensis	RchiOBHm_Chr4g0416471 RchiOBHm_Chr7g0188941 RchiOBHm_Chr7g0194331
rosa_laevigata	RLG00000004049 RLG00000004648
rosa_multiflora	Rmu_co8071116.1_g000001 Rmu_sc0007831.1_g000001 Rmu_sc0032883.1_g000001 Rmu_ssc0000113.1_g000006
rosa_roxburghii	Rroxscaffold_3G00265920
rosa_rugosa	Rorug06G0494800 Rorug06G0494900 Rorug06G0495000
rosa_samantha	Rh7AG099700 Rh7BG101800 Rh7CG103100 Rh7CG146600 Rh7DG101600 Rh7DG144200
rosa_wichuraiana	Rw7G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	562
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	3 cut(s)	670, 713, 843
AcsI	RAATTY	4 cut(s)	174, 535, 559, 622
AfaI	GTAC	2 cut(s)	362, 825
AfeI	AGCGCT	1 cut(s)	249
AfiI	CCNNNNNNNGG	4 cut(s)	599, 600, 701, 702
AflII	CTTAAG	1 cut(s)	734
AgsI	TTSAA	6 cut(s)	145, 397, 446, 622, 654, 884
AhlI	ACTAGT	1 cut(s)	505
AjnI	CCWGG	1 cut(s)	72
AloI	GAACNNNNNNTCC	2 cut(s)	447, 479
AluBI	AGCT	3 cut(s)	422, 729, 739
AluI	AGCT	3 cut(s)	422, 729, 739
Alw21I	GWGCWC	2 cut(s)	162, 589
Ama87I	CYCGRG	1 cut(s)	167
Aor51HI	AGCGCT	1 cut(s)	249
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	3 cut(s)	194, 254, 726
ApoI	RAATTY	4 cut(s)	174, 535, 559, 622
Asp700I	GAANNNNTTC	1 cut(s)	535
AspLEI	GCGC	2 cut(s)	250, 791
AsuHPI	GGTGA	1 cut(s)	718
AvaI	CYCGRG	1 cut(s)	167
BarI	GAAGNNNNNNTAC	2 cut(s)	353, 385
Bbv12I	GWGCWC	2 cut(s)	162, 589
BbvI	GCAGC	3 cut(s)	181, 241, 738
BccI	CCATC	3 cut(s)	220, 593, 704
BceAI	ACGGC	1 cut(s)	136
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BciT130I	CCWGG	1 cut(s)	74
BcuI	ACTAGT	1 cut(s)	505
BfaI	CTAG	2 cut(s)	467, 506
BfoI	RGCGCY	1 cut(s)	251
BfrI	CTTAAG	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	562
BglII	AGATCT	2 cut(s)	612, 866
BisI	GCNGC	3 cut(s)	195, 255, 727
BlsI	GCNGC	3 cut(s)	196, 256, 728
BmcAI	AGTACT	1 cut(s)	825
Bme1390I	CCNGG	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	74
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	2 cut(s)	46, 673
BmuI	ACTGGG	1 cut(s)	334
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
Bpu10I	CCTNAGC	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	4 cut(s)	599, 600, 701, 702
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	2 cut(s)	472, 798
BseBI	CCWGG	1 cut(s)	74
BseLI	CCNNNNNNNGG	4 cut(s)	599, 600, 701, 702
BseMI	GCAATG	2 cut(s)	472, 798
BseMII	CTCAG	3 cut(s)	180, 541, 710
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	3 cut(s)	181, 241, 738
BseYI	CCCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	211
BsiHKAI	GWGCWC	2 cut(s)	162, 589
BsiHKCI	CYCGRG	1 cut(s)	167
BslI	CCNNNNNNNGG	4 cut(s)	599, 600, 701, 702
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	162, 589
Bsp143I	GATC	5 cut(s)	260, 349, 436, 612, 866
BspACI	CCGC	3 cut(s)	670, 713, 843
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	3 cut(s)	181, 540, 711
BspMI	ACCTGC	1 cut(s)	562
BspTI	CTTAAG	1 cut(s)	734
BsrDI	GCAATG	2 cut(s)	472, 798
BsrI	ACTGG	1 cut(s)	340
BssMI	GATC	5 cut(s)	260, 349, 436, 612, 866
BssNAI	GTATAC	1 cut(s)	268
Bst1107I	GTATAC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	4 cut(s)	33, 330, 386, 823
Bst6I	CTCTTC	1 cut(s)	879
BstAFI	CTTAAG	1 cut(s)	734
BstC8I	GCNNGC	2 cut(s)	252, 513
BstDEI	CTNAG	4 cut(s)	189, 283, 527, 719
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	2 cut(s)	250, 791
BstKTI	GATC	5 cut(s)	263, 352, 439, 615, 869
BstMBI	GATC	5 cut(s)	260, 349, 436, 612, 866
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 786
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	181, 241, 738
BstX2I	RGATCY	2 cut(s)	612, 866
BstYI	RGATCY	2 cut(s)	612, 866
BstZ17I	GTATAC	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	211
BtgZI	GCGATG	2 cut(s)	69, 563
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	3 cut(s)	38, 272, 391
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	2 cut(s)	252, 513
CfoI	GCGC	2 cut(s)	250, 791
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	361, 824
CviAII	CATG	2 cut(s)	555, 641
CviJI	RGCY	9 cut(s)	194, 211, 231, 422, 676, 729, 739, 815, 855
CviKI_1	RGCY	9 cut(s)	194, 211, 231, 422, 676, 729, 739, 815, 855
CviQI	GTAC	2 cut(s)	361, 824
DdeI	CTNAG	4 cut(s)	189, 283, 527, 719
DpnI	GATC	5 cut(s)	262, 351, 438, 614, 868
DpnII	GATC	5 cut(s)	260, 349, 436, 612, 866
Eam1104I	CTCTTC	1 cut(s)	879
EarI	CTCTTC	1 cut(s)	879
EciI	GGCGGA	1 cut(s)	858
Eco32I	GATATC	1 cut(s)	186
Eco47III	AGCGCT	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	167
EcoRI	GAATTC	2 cut(s)	535, 559
EcoRII	CCWGG	1 cut(s)	72
EcoRV	GATATC	1 cut(s)	186
FaeI	CATG	2 cut(s)	558, 644
FatI	CATG	2 cut(s)	554, 640
FauI	CCCGC	1 cut(s)	706
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	195, 255, 727
Fsp4HI	GCNGC	3 cut(s)	195, 255, 727
FspBI	CTAG	2 cut(s)	467, 506
GlaI	GCGC	2 cut(s)	249, 790
GluI	GCNGC	3 cut(s)	195, 255, 727
GsaI	CCCAGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	211
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	2 cut(s)	250, 791
Hin1II	CATG	2 cut(s)	558, 644
Hin6I	GCGC	2 cut(s)	248, 789
HinP1I	GCGC	2 cut(s)	248, 789
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	3 cut(s)	219, 288, 335
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	2 cut(s)	130, 268
Hpy188I	TCNGA	6 cut(s)	152, 190, 334, 530, 720, 877
Hpy188III	TCNNGA	4 cut(s)	167, 169, 216, 347
Hpy8I	GTNNAC	2 cut(s)	130, 268
HpyAV	CCTTC	2 cut(s)	139, 454
HpyCH4III	ACNGT	4 cut(s)	33, 330, 386, 823
HpyCH4V	TGCA	6 cut(s)	59, 197, 257, 277, 515, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 786
HpyF3I	CTNAG	4 cut(s)	189, 283, 527, 719
Hsp92II	CATG	2 cut(s)	558, 644
HspAI	GCGC	2 cut(s)	248, 789
Kzo9I	GATC	5 cut(s)	260, 349, 436, 612, 866
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	9 cut(s)	59, 78, 86, 245, 353, 360, 438, 557, 759
Lsp1109I	GCAGC	3 cut(s)	181, 241, 738
LweI	GCATC	2 cut(s)	46, 673
MaeI	CTAG	2 cut(s)	467, 506
MaeIII	GTNAC	2 cut(s)	110, 380
MalI	GATC	5 cut(s)	262, 351, 438, 614, 868
MboI	GATC	5 cut(s)	260, 349, 436, 612, 866
MboII	GAAGA	3 cut(s)	401, 458, 622
MflI	RGATCY	2 cut(s)	612, 866
MhlI	GDGCHC	2 cut(s)	162, 589
MluCI	AATT	8 cut(s)	23, 82, 140, 174, 321, 535, 559, 622
MnlI	CCTC	6 cut(s)	97, 184, 201, 449, 475, 833
MroXI	GAANNNNTTC	1 cut(s)	535
MseI	TTAA	2 cut(s)	87, 735
MslI	CAYNNNNRTG	1 cut(s)	876
MspA1I	CMGCKG	1 cut(s)	670
MspCI	CTTAAG	1 cut(s)	734
MspR9I	CCNGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	254, 786
NdeII	GATC	5 cut(s)	260, 349, 436, 612, 866
NlaIII	CATG	2 cut(s)	558, 644
NmeAIII	GCCGAG	1 cut(s)	608
NmuCI	GTSAC	2 cut(s)	110, 380
PaeR7I	CTCGAG	1 cut(s)	167
PctI	GAATGC	1 cut(s)	715
PdmI	GAANNNNTTC	1 cut(s)	535
PfeI	GAWTC	3 cut(s)	219, 288, 335
PkrI	GCNGC	3 cut(s)	196, 256, 728
Psp6I	CCWGG	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	72
PsuI	RGATCY	2 cut(s)	612, 866
RsaI	GTAC	2 cut(s)	362, 825
RsaNI	GTAC	2 cut(s)	361, 824
RseI	CAYNNNNRTG	1 cut(s)	876
SaqAI	TTAA	2 cut(s)	87, 735
SatI	GCNGC	3 cut(s)	195, 255, 727
Sau3AI	GATC	5 cut(s)	260, 349, 436, 612, 866
ScaI	AGTACT	1 cut(s)	825
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	2 cut(s)	162, 589
SetI	ASST	7 cut(s)	150, 424, 465, 522, 576, 731, 741
SfaNI	GCATC	2 cut(s)	46, 673
Sfr274I	CTCGAG	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	876
SmlI	CTYRAG	3 cut(s)	155, 167, 734
SmoI	CTYRAG	3 cut(s)	155, 167, 734
SpeI	ACTAGT	1 cut(s)	505
Sse9I	AATT	8 cut(s)	23, 82, 140, 174, 321, 535, 559, 622
SsiI	CCGC	3 cut(s)	670, 713, 843
SspMI	CTAG	2 cut(s)	467, 506
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	4 cut(s)	33, 330, 386, 823
TaqI	TCGA	3 cut(s)	168, 217, 838
TasI	AATT	8 cut(s)	23, 82, 140, 174, 321, 535, 559, 622
TatI	WGTACW	2 cut(s)	360, 823
TfiI	GAWTC	3 cut(s)	219, 288, 335
Tru1I	TTAA	2 cut(s)	87, 735
Tru9I	TTAA	2 cut(s)	87, 735
TscAI	CASTG	3 cut(s)	38, 279, 391
TseFI	GTSAC	2 cut(s)	110, 380
TseI	GCWGC	3 cut(s)	194, 254, 726
Tsp45I	GTSAC	2 cut(s)	110, 380
TspDTI	ATGAA	8 cut(s)	54, 153, 168, 333, 432, 566, 698, 731
TspRI	CASTG	3 cut(s)	38, 279, 391
Vha464I	CTTAAG	1 cut(s)	734
XapI	RAATTY	4 cut(s)	174, 535, 559, 622
XhoI	CTCGAG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	535
XspI	CTAG	2 cut(s)	467, 506
ZrmI	AGTACT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.