Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000113.1

Orthogroup ID

OG0003250

Physical Location & Seq

Genomic Coordinates Forward (+)

25542 .. 32419

Gene Structure 6878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000113.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3417 bp

atggcaaaacaggagcaaaagcaggagcagcctgcaatcatcaaccctctgcaggtccaggaagacggggatctggaccctggatctgacgacctcgaggctcctctgcctctcaccgtcacttcccgggtcttgtatatgttgggtgacattgcgtctggaccggccttcaaaatcagtcaatggctggaattggtccgtaaacgcagtgccaaataccattcctctggcttccctcgccgcccattaaggcttgacacaatgcctgctagtgcaggagagtgtagtgaggactggaaaggtcctgcgtcgcctgagcaaaccacagaagtcaatctctgggaaagacttggtaaagctgctacattggacattgagtcgagttttttctcatgggataggctttcttcacttcaccacactgaacatagtagtagcaatgatcagtctgaggatgaaatgaacaaagcgctggaggtcaccgtgaattcggggggagttgttttctttgcccttttcaaccagccagggactgatgataactcttctaaggaagcagcggctgttataaagatatcttcatcgaggatggccacacagtctgaacgtctaggttacgaatttgcaaagtggcttggagttcgaactccacaggccagagtcatacataattgtagtatggagtggctccagatgaaggaagcagcagaaaaagcaagggaagcagcagtttcagaaggagatgaatgtggggaaatgacatgttcggaacttttggaagctcttgaacttagccgatgccttttgctcatgagctatgttcacggatctcctttacttgaaagctcaagtgtatttgaggtgaaggaaactgcagagaaaacagcagcttctcttggtaggatcttgatgttggaccttgtcatcagaaatgaagatagactaccttgccgtcagctcagatggcgtggaaactcggcaaatctattgtttgcagacaaaatggattttggaaatatggacagattggaggaagcctttgattctgccatcaagagatacaaaccaagagtgatcagagctcttcaaaaggatagaagggcaacttcagtagatatcagattgcataatacagcattggtaccacagaaatctgatctttctgacattatggattcgccaaggtctagtcagatgagcgtaaagagtcaactctcagatgatttaatgttttccgattttccagttgtggctattgattctggcgttcctcgtcaacctcctgctggaaaacgtgcaaatgaccaggaaatttatccaaagttggttgaattactactgaacaattctgaatactcctctaatctgttacatgacataacattggggaaattaggacgtcctccgttacaagatactgatgcatctgatacacaagcaatggaaatgactttggttgttcaagggttccgtagtgggttcaaacgtgctctcagggatctgcaaggattccatatcttcttactcacacttcatcaaaaactggagaatttgatacgtatatttttcaatattatagataaaataggggagtccgataaggaggatttggtagttattgagtctccatcacaagctgccggaagtgtagagcctaacagcgacgcatttacattcgttcccatgcacctattttctgtggccaataaagacctacataaccccgggagggtcccgcccctagataaaatctcacacaccctcctacgtggctccatctcccaccctccattactcggactcagtatcccggttggaattatggctagggttttggttcagtccacgaatattcccggtgtggttggcgggcgaaggcttgcccaatctaaaggatctggaaatactagaaggtcgaccaagatgatgtgtaccttgcgagcacctgctttgagactgagcagtttctccggactacgtagtgttaatgctctagatattatggcgaggcctgggcaagacttgtattctaaggtgggagtagctatctcctcccggcgtcaaaaggctagtagatgtgtgcccaaagccatgtttgagcgcttcacagaaaaagcaataaaggtgattatgcttgcacaagaggaagcaaggcgactcggtcacaactttgttggtacagagcagatacttttgggtcttattggtgaaggaactggaattgctgccaaggtccttaaatctatgggaatcaatcttaaagatgcacgcgttgaagtggaaaagatcattggaaggggtagtggctttgttgctgttgaaatcccattcactcctcgtgcaaagcgagttttggaactgtcactggaggaagctcgacaactgggccataactatattggttctgaacacttgcttttgggactgcttcgggaaggtgagggtgtggcagctcgtgttcttgagaatttaggcgctgaccccagcaacattcgtacacaggttattcgtatggtgggtgagagcacagaagctgttggtgttggagctgggcagggaagcagtggcaacaagatgccaactctggaggagtatggtaccaatttgactaagctagcagaggagggaaagctggatcctgttgttggaagacaaccacaaattgaacgtgttgtccaaattttgggtaggcggacaaagaataacccctgcctgattggggaacctggtgttgggaagactgcaattgctgaaggtcttgctcaacgaattgcaagcggtgatgtgcctgaaacaatagagggaaagaaggttatcactctggatatgggtcttcttgttgctggtacaaaataccgtggagagttcgaggaaagattaaagaagctgatggaggaaatcaaacaaagtgatgagataattttgttcattgatgaggtgcacactttaattggagcaggagcagcagaaggtgcaattgatgctgccaatatattaaaaccagctcttgcaagaggtgaactgcagtgtattggagccaccactctagatgaatacagaaagcacattgagaaagacccagcattggaaagacgttttcaaccagttaaagttcctgaaccatctgtggacgaaacaatacagattttgcgagggctccgggagcgatatgagatccaccacaaactccggtatactgatgaagctctagtatctgccgctcagctatcataccagtacatcagtgatcgctttctacctgataaagcaattgacttgattgatgaagctggttctcgagttcgccttcgtcatgcacagctacctgaagaagctagagaccttgacaaagaactgagacagattaccaaggagaagaatgaagctgttcgaagccaagactttgaaaaggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

1138

Amino Acids

125.8

Weight (kDa)

6.1

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23720 AT5G23720 AT5G23720
fragaria_vesca	FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220 FvH4_5g09220
malus_domestica	MD06G1132400.v1.1 MD14G1148800.v1.1
prunus_persica	Prupe.5G143400_v2.0.a1
pyrus_communis	pycom06g12400 pycom14g12360
rosa_chinensis	RchiOBHm_Chr4g0416471 RchiOBHm_Chr7g0188941 RchiOBHm_Chr7g0194331
rosa_laevigata	RLG00000004049 RLG00000004648
rosa_multiflora	Rmu_co8071116.1_g000001 Rmu_sc0007831.1_g000001 Rmu_sc0032883.1_g000001 Rmu_ssc0000113.1_g000006
rosa_roxburghii	Rroxscaffold_3G00265920
rosa_rugosa	Rorug06G0494800 Rorug06G0494900 Rorug06G0495000
rosa_samantha	Rh7AG099700 Rh7BG101800 Rh7CG103100 Rh7CG146600 Rh7DG101600 Rh7DG144200
rosa_wichuraiana	Rw7G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	569
AarI	CACCTGC	1 cut(s)	1954
AatII	GACGTC	1 cut(s)	1402
AbsI	CCTCGAGG	1 cut(s)	95
Acc36I	ACCTGC	2 cut(s)	43, 1954
Acc65I	GGTACC	2 cut(s)	1141, 2597
AccB1I	GGYRCC	2 cut(s)	1141, 2597
AccB7I	CCANNNNNTGG	1 cut(s)	2683
AccBSI	CCGCTC	1 cut(s)	3221
AccI	GTMKAC	2 cut(s)	1916, 3194
AccII	CGCG	1 cut(s)	2271
AccIII	TCCGGA	1 cut(s)	1970
AciI	CCGC	7 cut(s)	241, 560, 1736, 1869, 2692, 2778, 3219
AclWI	GGATC	9 cut(s)	78, 91, 835, 911, 1506, 1903, 2630, 2643, 3169
AcoI	YGGCCR	2 cut(s)	591, 1701
AcsI	RAATTY	6 cut(s)	487, 620, 1311, 1549, 2467, 2679
AcuI	CTGAAG	3 cut(s)	1092, 2772, 3348
AcyI	GRCGYC	2 cut(s)	1399, 2059
AfaI	GTAC	7 cut(s)	1143, 1933, 2179, 2497, 2599, 2848, 3239
AfeI	AGCGCT	2 cut(s)	471, 2102
AflIII	ACRYGT	3 cut(s)	761, 2269, 2668
AhdI	GACNNNNNGTC	2 cut(s)	154, 376
AjnI	CCWGG	6 cut(s)	57, 79, 526, 1305, 2011, 2725
AjuI	GAANNNNNNNTTGG	4 cut(s)	2274, 2306, 2715, 2747
AloI	GAACNNNNNNTCC	2 cut(s)	2658, 2690
Alw21I	GWGCWC	5 cut(s)	1084, 1492, 1945, 2528, 2943
Alw26I	GTCTC	4 cut(s)	1629, 1948, 3333, 3352
Alw44I	GTGCAC	1 cut(s)	2939
AlwI	GGATC	9 cut(s)	78, 91, 835, 911, 1506, 1903, 2630, 2643, 3169
AlwNI	CAGNNNCTG	3 cut(s)	533, 563, 2534
Ama87I	CYCGRG	4 cut(s)	95, 126, 1724, 3297
Aor13HI	TCCGGA	1 cut(s)	1970
Aor51HI	AGCGCT	2 cut(s)	471, 2102
AoxI	GGCC	6 cut(s)	165, 591, 654, 1701, 2009, 2386
ApaLI	GTGCAC	1 cut(s)	2939
ApoI	RAATTY	6 cut(s)	487, 620, 1311, 1549, 2467, 2679
Asp700I	GAANNNNTTC	1 cut(s)	3387
Asp718I	GGTACC	2 cut(s)	1141, 2597
AspLEI	GCGC	3 cut(s)	472, 2103, 2477
AspS9I	GGNCC	9 cut(s)	55, 76, 161, 196, 302, 916, 1732, 2233, 2386
AsuC2I	CCSGG	8 cut(s)	127, 128, 1725, 1726, 1811, 1857, 2056, 3161
AsuII	TTCGAA	2 cut(s)	643, 3391
AsuNHI	GCTAGC	1 cut(s)	2614
AvaI	CYCGRG	4 cut(s)	95, 126, 1724, 3297
AvaII	GGWCC	8 cut(s)	55, 76, 161, 196, 302, 916, 1732, 2233
BaeGI	GKGCMC	2 cut(s)	2085, 2943
BalI	TGGCCA	2 cut(s)	593, 1703
BamHI	GGATCC	1 cut(s)	2635
BanI	GGYRCC	2 cut(s)	1141, 2597
BanII	GRGCYC	2 cut(s)	1084, 3159
BarI	GAAGNNNNNNTAC	2 cut(s)	927, 959
BauI	CACGAG	2 cut(s)	2337, 2454
BbsI	GAAGAC	4 cut(s)	69, 2656, 2744, 2825
Bbv12I	GWGCWC	5 cut(s)	1084, 1492, 1945, 2528, 2943
BccI	CCATC	7 cut(s)	583, 957, 1058, 1636, 1784, 2884, 3130
BceAI	ACGGC	1 cut(s)	936
BciT130I	CCWGG	6 cut(s)	59, 81, 528, 1307, 2013, 2727
BciVI	GTATCC	1 cut(s)	1817
BclI	TGATCA	2 cut(s)	442, 1074
BcnI	CCSGG	8 cut(s)	127, 128, 1725, 1726, 1811, 1857, 2056, 3161
BcoDI	GTCTC	4 cut(s)	1629, 1948, 3333, 3352
BfmI	CTRYAG	3 cut(s)	50, 873, 3023
BfoI	RGCGCY	3 cut(s)	473, 2104, 2478
BfuAI	ACCTGC	2 cut(s)	43, 1954
BfuI	GTATCC	1 cut(s)	1817
BlpI	GCTNAGC	1 cut(s)	3222
Bme18I	GGWCC	8 cut(s)	55, 76, 161, 196, 302, 916, 1732, 2233
BmeRI	GACNNNNNGTC	2 cut(s)	154, 376
BmeT110I	CYCGRG	4 cut(s)	95, 126, 1724, 3297
BmgT120I	GGNCC	9 cut(s)	55, 76, 161, 196, 302, 916, 1732, 2233, 2386
BmrI	ACTGGG	1 cut(s)	2393
BmsI	GCATC	6 cut(s)	788, 1411, 1433, 2254, 2565, 2971
BmtI	GCTAGC	1 cut(s)	2618
BmuI	ACTGGG	1 cut(s)	2393
BpiI	GAAGAC	4 cut(s)	69, 2656, 2744, 2825
BpmI	CTGGAG	5 cut(s)	494, 674, 1565, 2387, 2606
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	3222
Bpu14I	TTCGAA	2 cut(s)	643, 3391
BpuEI	CTTGAG	2 cut(s)	832, 2483
BpuMI	CCSGG	8 cut(s)	127, 128, 1725, 1726, 1811, 1857, 2056, 3161
BsaAI	YACGTR	3 cut(s)	1559, 1769, 1979
BsaHI	GRCGYC	2 cut(s)	1399, 2059
BsaI	GGTCTC	1 cut(s)	3333
BsaWI	WCCGGW	2 cut(s)	1970, 3189
BsaXI	ACNNNNNCTCC	2 cut(s)	1746, 1776
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	8 cut(s)	299, 1244, 1548, 2221, 2370, 2388, 3104, 3235
Bse3DI	GCAATG	3 cut(s)	150, 445, 1446
BseAI	TCCGGA	1 cut(s)	1970
BseBI	CCWGG	6 cut(s)	59, 81, 528, 1307, 2013, 2727
BseGI	GGATG	2 cut(s)	460, 594
BseMI	GCAATG	3 cut(s)	150, 445, 1446
BseMII	CTCAG	9 cut(s)	306, 441, 973, 1230, 1507, 1816, 1949, 3236, 3347
BseNI	ACTGG	8 cut(s)	299, 1244, 1548, 2221, 2370, 2388, 3104, 3235
BseRI	GAGGAG	6 cut(s)	93, 1348, 2041, 2325, 2603, 2636
BseSI	GKGCMC	2 cut(s)	2085, 2943
BseYI	CCCAGC	3 cut(s)	2483, 2549, 3079
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	2271
BshFI	GGCC	6 cut(s)	167, 593, 656, 1703, 2011, 2388
BshNI	GGYRCC	2 cut(s)	1141, 2597
BsiHKAI	GWGCWC	5 cut(s)	1084, 1492, 1945, 2528, 2943
BsiHKCI	CYCGRG	4 cut(s)	95, 126, 1724, 3297
BslFI	GGGAC	3 cut(s)	544, 1718, 2436
BsmAI	GTCTC	4 cut(s)	1629, 1948, 3333, 3352
BsmFI	GGGAC	3 cut(s)	544, 1718, 2436
BsnI	GGCC	6 cut(s)	167, 593, 656, 1703, 2011, 2388
Bso31I	GGTCTC	1 cut(s)	3333
BsoBI	CYCGRG	4 cut(s)	95, 126, 1724, 3297
Bsp119I	TTCGAA	2 cut(s)	643, 3391
Bsp1286I	GDGCHC	7 cut(s)	1084, 1492, 1945, 2085, 2528, 2943, 3159
Bsp13I	TCCGGA	1 cut(s)	1970
Bsp1720I	GCTNAGC	1 cut(s)	3222
BspACI	CCGC	7 cut(s)	241, 560, 1736, 1869, 2692, 2778, 3219
BspANI	GGCC	6 cut(s)	167, 593, 656, 1703, 2011, 2388
BspCNI	CTCAG	9 cut(s)	307, 442, 972, 1229, 1506, 1815, 1950, 3235, 3348
BspEI	TCCGGA	1 cut(s)	1970
BspFNI	CGCG	1 cut(s)	2271
BspHI	TCATGA	1 cut(s)	810
BspMAI	CTGCAG	3 cut(s)	54, 877, 3027
BspMI	ACCTGC	2 cut(s)	43, 1954
BspOI	GCTAGC	1 cut(s)	2618
BspPI	GGATC	9 cut(s)	78, 91, 835, 911, 1506, 1903, 2630, 2643, 3169
BspQI	GCTCTTC	1 cut(s)	1089
BspT104I	TTCGAA	2 cut(s)	643, 3391
BspT107I	GGYRCC	2 cut(s)	1141, 2597
BspTNI	GGTCTC	1 cut(s)	3333
BsrBI	CCGCTC	1 cut(s)	3221
BsrDI	GCAATG	3 cut(s)	150, 445, 1446
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	8 cut(s)	299, 1244, 1548, 2221, 2370, 2388, 3104, 3235
BssAI	RCCGGY	1 cut(s)	163
BssNAI	GTATAC	1 cut(s)	3195
BssNI	GRCGYC	2 cut(s)	1399, 2059
BssSI	CACGAG	2 cut(s)	2337, 2454
BssT1I	CCWWGG	3 cut(s)	1181, 2229, 3369
Bst1107I	GTATAC	1 cut(s)	3195
Bst2BI	CACGAG	2 cut(s)	2337, 2454
Bst2UI	CCWGG	6 cut(s)	59, 81, 528, 1307, 2013, 2727
Bst4CI	ACNGT	5 cut(s)	118, 484, 600, 2361, 2858
Bst6I	CTCTTC	2 cut(s)	550, 1089
BstACI	GRCGYC	2 cut(s)	1399, 2059
BstAPI	GCANNNNNTGC	2 cut(s)	2972, 2981
BstBAI	YACGTR	3 cut(s)	1559, 1769, 1979
BstBI	TTCGAA	2 cut(s)	643, 3391
BstC8I	GCNNGC	9 cut(s)	33, 267, 1871, 1881, 1941, 2136, 2269, 2616, 2776
BstDSI	CCRYGG	1 cut(s)	2857
BstEII	GGTNACC	1 cut(s)	478
BstF5I	GGATG	2 cut(s)	460, 594
BstFNI	CGCG	1 cut(s)	2271
BstH2I	RGCGCY	3 cut(s)	473, 2104, 2478
BstHHI	GCGC	3 cut(s)	472, 2103, 2477
BstMAI	GTCTC	4 cut(s)	1629, 1948, 3333, 3352
BstMWI	GCNNNNNNNGC	9 cut(s)	28, 237, 713, 722, 964, 2963, 2972, 2981, 3163
BstNI	CCWGG	6 cut(s)	59, 81, 528, 1307, 2013, 2727
BstNSI	RCATGY	1 cut(s)	765
BstPI	GGTNACC	1 cut(s)	478
BstSFI	CTRYAG	3 cut(s)	50, 873, 3023
BstSLI	GKGCMC	2 cut(s)	2085, 2943
BstSNI	TACGTA	2 cut(s)	1559, 1979
BstUI	CGCG	1 cut(s)	2271
BstV2I	GAAGAC	4 cut(s)	69, 2656, 2744, 2825
BstX2I	RGATCY	8 cut(s)	70, 83, 827, 903, 1498, 1895, 2635, 3174
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	8 cut(s)	70, 83, 827, 903, 1498, 1895, 2635, 3174
BstZ17I	GTATAC	1 cut(s)	3195
BsuI	GTATCC	1 cut(s)	1817
BsuRI	GGCC	6 cut(s)	167, 593, 656, 1703, 2011, 2388
BtgI	CCRYGG	1 cut(s)	2857
BtsCI	GGATG	2 cut(s)	460, 594
BtsI	GCAGTG	3 cut(s)	214, 2569, 3032
BtsIMutI	CAGTG	6 cut(s)	214, 420, 2363, 2569, 3032, 3250
BveI	ACCTGC	2 cut(s)	43, 1954
Cac8I	GCNNGC	9 cut(s)	33, 267, 1871, 1881, 1941, 2136, 2269, 2616, 2776
CaiI	CAGNNNCTG	3 cut(s)	533, 563, 2534
CciI	TCATGA	1 cut(s)	810
CfoI	GCGC	3 cut(s)	472, 2103, 2477
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	9 cut(s)	55, 76, 161, 196, 302, 916, 1732, 2233, 2386
Cfr9I	CCCGGG	2 cut(s)	126, 1724
CseI	GACGC	4 cut(s)	144, 297, 1673, 2048
CsiI	ACCWGGT	1 cut(s)	2725
Csp6I	GTAC	7 cut(s)	1142, 1932, 2178, 2496, 2598, 2847, 3238
CviAII	CATG	7 cut(s)	393, 762, 811, 1373, 1684, 2092, 3314
CviQI	GTAC	7 cut(s)	1142, 1932, 2178, 2496, 2598, 2847, 3238
DriI	GACNNNNNGTC	2 cut(s)	154, 376
EaeI	YGGCCR	2 cut(s)	591, 1701
Eam1104I	CTCTTC	2 cut(s)	550, 1089
Eam1105I	GACNNNNNGTC	2 cut(s)	154, 376
EarI	CTCTTC	2 cut(s)	550, 1089
EciI	GGCGGA	1 cut(s)	2707
Ecl136II	GAGCTC	1 cut(s)	1082
Eco105I	TACGTA	2 cut(s)	1559, 1979
Eco130I	CCWWGG	3 cut(s)	1181, 2229, 3369
Eco147I	AGGCCT	1 cut(s)	2011
Eco24I	GRGCYC	2 cut(s)	1084, 3159
Eco31I	GGTCTC	1 cut(s)	3333
Eco32I	GATATC	2 cut(s)	576, 1117
Eco47I	GGWCC	8 cut(s)	55, 76, 161, 196, 302, 916, 1732, 2233
Eco47III	AGCGCT	2 cut(s)	471, 2102
Eco53kI	GAGCTC	1 cut(s)	1082
Eco57I	CTGAAG	3 cut(s)	1092, 2772, 3348
Eco88I	CYCGRG	4 cut(s)	95, 126, 1724, 3297
Eco91I	GGTNACC	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	1082
EcoO109I	RGGNCCY	3 cut(s)	302, 1732, 2233
EcoO65I	GGTNACC	1 cut(s)	478
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	6 cut(s)	57, 79, 526, 1305, 2011, 2725
EcoRV	GATATC	2 cut(s)	576, 1117
EcoT14I	CCWWGG	3 cut(s)	1181, 2229, 3369
EcoT22I	ATGCAT	1 cut(s)	1426
EcoT38I	GRGCYC	2 cut(s)	1084, 3159
ErhI	CCWWGG	3 cut(s)	1181, 2229, 3369
FaeI	CATG	7 cut(s)	396, 765, 814, 1376, 1687, 2095, 3317
FalI	AAGNNNNNCTT	2 cut(s)	1090, 1122
FaqI	GGGAC	3 cut(s)	544, 1718, 2436
FatI	CATG	7 cut(s)	392, 761, 810, 1372, 1683, 2091, 3313
FauI	CCCGC	2 cut(s)	1743, 1862
FbaI	TGATCA	2 cut(s)	442, 1074
FblI	GTMKAC	2 cut(s)	1916, 3194
FokI	GGATG	2 cut(s)	467, 601
FriOI	GRGCYC	2 cut(s)	1084, 3159
GlaI	GCGC	3 cut(s)	471, 2102, 2476
GsaI	CCCAGC	3 cut(s)	2487, 2553, 3083
GsuI	CTGGAG	5 cut(s)	494, 674, 1565, 2387, 2606
HaeII	RGCGCY	3 cut(s)	473, 2104, 2478
HaeIII	GGCC	6 cut(s)	167, 593, 656, 1703, 2011, 2388
HgaI	GACGC	4 cut(s)	144, 297, 1673, 2048
HhaI	GCGC	3 cut(s)	472, 2103, 2477
Hin1I	GRCGYC	2 cut(s)	1399, 2059
Hin1II	CATG	7 cut(s)	396, 765, 814, 1376, 1687, 2095, 3317
Hin6I	GCGC	3 cut(s)	470, 2101, 2475
HinP1I	GCGC	3 cut(s)	470, 2101, 2475
HincII	GTYRAC	3 cut(s)	1211, 1277, 1917
HindII	GTYRAC	3 cut(s)	1211, 1277, 1917
Hpy99I	CGWCG	2 cut(s)	313, 1667
HpyCH4III	ACNGT	5 cut(s)	118, 484, 600, 2361, 2858
HpyCH4IV	ACGT	9 cut(s)	607, 1294, 1399, 1486, 1558, 1768, 1978, 2668, 3094
HpyF10VI	GCNNNNNNNGC	9 cut(s)	28, 237, 713, 722, 964, 2963, 2972, 2981, 3163
HpySE526I	ACGT	9 cut(s)	607, 1294, 1399, 1486, 1558, 1768, 1978, 2668, 3094
Hsp92I	GRCGYC	2 cut(s)	1399, 2059
Hsp92II	CATG	7 cut(s)	396, 765, 814, 1376, 1687, 2095, 3317
HspAI	GCGC	3 cut(s)	470, 2101, 2475
KflI	GGGWCCC	1 cut(s)	1732
Kpn2I	TCCGGA	1 cut(s)	1970
KpnI	GGTACC	2 cut(s)	1145, 2601
Ksp22I	TGATCA	2 cut(s)	442, 1074
LguI	GCTCTTC	1 cut(s)	1089
LweI	GCATC	6 cut(s)	788, 1411, 1433, 2254, 2565, 2971
MabI	ACCWGGT	1 cut(s)	2725
MaeII	ACGT	9 cut(s)	607, 1294, 1399, 1486, 1558, 1768, 1978, 2668, 3094
MaeIII	GTNAC	8 cut(s)	118, 146, 478, 614, 1368, 1407, 2162, 2361
MbiI	CCGCTC	1 cut(s)	3221
MfeI	CAATTG	3 cut(s)	2745, 2976, 3270
MflI	RGATCY	8 cut(s)	70, 83, 827, 903, 1498, 1895, 2635, 3174
MhlI	GDGCHC	7 cut(s)	1084, 1492, 1945, 2085, 2528, 2943, 3159
MlsI	TGGCCA	2 cut(s)	593, 1703
MluI	ACGCGT	1 cut(s)	2269
MluNI	TGGCCA	2 cut(s)	593, 1703
MlyI	GAGTC	7 cut(s)	386, 669, 1216, 1601, 1631, 1794, 2151
MmeI	TCCRAC	4 cut(s)	894, 1795, 2524, 2626
Mox20I	TGGCCA	2 cut(s)	593, 1703
Mph1103I	ATGCAT	1 cut(s)	1426
MroI	TCCGGA	1 cut(s)	1970
MroXI	GAANNNNTTC	1 cut(s)	3387
MscI	TGGCCA	2 cut(s)	593, 1703
MseI	TTAA	9 cut(s)	248, 1226, 1986, 2238, 2259, 2879, 2948, 2996, 3108
Msp20I	TGGCCA	2 cut(s)	593, 1703
MspA1I	CMGCKG	1 cut(s)	560
MunI	CAATTG	3 cut(s)	2745, 2976, 3270
MvaI	CCWGG	6 cut(s)	59, 81, 528, 1307, 2013, 2727
MvnI	CGCG	1 cut(s)	2271
MwoI	GCNNNNNNNGC	9 cut(s)	28, 237, 713, 722, 964, 2963, 2972, 2981, 3163
NciI	CCSGG	8 cut(s)	127, 128, 1725, 1726, 1811, 1857, 2056, 3161
NheI	GCTAGC	1 cut(s)	2614
NlaIII	CATG	7 cut(s)	396, 765, 814, 1376, 1687, 2095, 3317
NmeAIII	GCCGAG	1 cut(s)	956
NmuCI	GTSAC	5 cut(s)	118, 146, 478, 2162, 2361
NsiI	ATGCAT	1 cut(s)	1426
NspI	RCATGY	1 cut(s)	765
NspV	TTCGAA	2 cut(s)	643, 3391
PaeR7I	CTCGAG	2 cut(s)	95, 3297
PagI	TCATGA	1 cut(s)	810
PaqCI	CACCTGC	1 cut(s)	1954
PceI	AGGCCT	1 cut(s)	2011
PciI	ACATGT	1 cut(s)	761
PciSI	GCTCTTC	1 cut(s)	1089
PcsI	WCGNNNNNNNCGW	1 cut(s)	2344
PdmI	GAANNNNTTC	1 cut(s)	3387
PfeI	GAWTC	5 cut(s)	1043, 1175, 1259, 1509, 2250
PflFI	GACNNNGTC	2 cut(s)	920, 2160
PflMI	CCANNNNNTGG	1 cut(s)	2683
PfoI	TCCNGGA	2 cut(s)	57, 3159
PleI	GAGTC	7 cut(s)	385, 668, 1215, 1600, 1630, 1794, 2151
PpsI	GAGTC	7 cut(s)	385, 668, 1215, 1600, 1630, 1794, 2151
Ppu21I	YACGTR	3 cut(s)	1559, 1769, 1979
PpuMI	RGGWCCY	3 cut(s)	302, 1732, 2233
PscI	ACATGT	1 cut(s)	761
PsiI	TTATAA	1 cut(s)	569
Psp124BI	GAGCTC	1 cut(s)	1084
Psp5II	RGGWCCY	3 cut(s)	302, 1732, 2233
Psp6I	CCWGG	6 cut(s)	57, 79, 526, 1305, 2011, 2725
PspEI	GGTNACC	1 cut(s)	478
PspFI	CCCAGC	3 cut(s)	2483, 2549, 3079
PspGI	CCWGG	6 cut(s)	57, 79, 526, 1305, 2011, 2725
PspPI	GGNCC	9 cut(s)	55, 76, 161, 196, 302, 916, 1732, 2233, 2386
PspPPI	RGGWCCY	3 cut(s)	302, 1732, 2233
PspXI	VCTCGAGB	1 cut(s)	95
PstI	CTGCAG	3 cut(s)	54, 877, 3027
PstNI	CAGNNNCTG	3 cut(s)	533, 563, 2534
PsuI	RGATCY	8 cut(s)	70, 83, 827, 903, 1498, 1895, 2635, 3174
PsyI	GACNNNGTC	2 cut(s)	920, 2160
RsaI	GTAC	7 cut(s)	1143, 1933, 2179, 2497, 2599, 2848, 3239
RsaNI	GTAC	7 cut(s)	1142, 1932, 2178, 2496, 2598, 2847, 3238
SacI	GAGCTC	1 cut(s)	1084
SalI	GTCGAC	1 cut(s)	1915
SapI	GCTCTTC	1 cut(s)	1089
SaqAI	TTAA	9 cut(s)	248, 1226, 1986, 2238, 2259, 2879, 2948, 2996, 3108
Sau96I	GGNCC	9 cut(s)	55, 76, 161, 196, 302, 916, 1732, 2233, 2386
SchI	GAGTC	7 cut(s)	386, 669, 1216, 1601, 1631, 1794, 2151
SduI	GDGCHC	7 cut(s)	1084, 1492, 1945, 2085, 2528, 2943, 3159
SexAI	ACCWGGT	1 cut(s)	2725
SfaNI	GCATC	6 cut(s)	788, 1411, 1433, 2254, 2565, 2971
SfcI	CTRYAG	3 cut(s)	50, 873, 3023
Sfr274I	CTCGAG	2 cut(s)	95, 3297
SfuI	TTCGAA	2 cut(s)	643, 3391
SinI	GGWCC	8 cut(s)	55, 76, 161, 196, 302, 916, 1732, 2233
SlaI	CTCGAG	2 cut(s)	95, 3297
SmaI	CCCGGG	2 cut(s)	128, 1726
SmlI	CTYRAG	4 cut(s)	95, 847, 2462, 3297
SmoI	CTYRAG	4 cut(s)	95, 847, 2462, 3297
SnaBI	TACGTA	2 cut(s)	1559, 1979
SseBI	AGGCCT	1 cut(s)	2011
SsiI	CCGC	7 cut(s)	241, 560, 1736, 1869, 2692, 2778, 3219
SspI	AATATT	2 cut(s)	1573, 1852
SstI	GAGCTC	1 cut(s)	1084
StuI	AGGCCT	1 cut(s)	2011
StyI	CCWWGG	3 cut(s)	1181, 2229, 3369
TaaI	ACNGT	5 cut(s)	118, 484, 600, 2361, 2858
TaiI	ACGT	9 cut(s)	610, 1297, 1402, 1489, 1561, 1771, 1981, 2671, 3097
TaqI	TCGA	9 cut(s)	96, 380, 584, 643, 1916, 2377, 2868, 3298, 3391
TaqII	GACCGA	1 cut(s)	2150
TatI	WGTACW	1 cut(s)	3237
TauI	GCSGC	3 cut(s)	243, 563, 3221
TfiI	GAWTC	5 cut(s)	1043, 1175, 1259, 1509, 2250
Tru1I	TTAA	9 cut(s)	248, 1226, 1986, 2238, 2259, 2879, 2948, 2996, 3108
Tru9I	TTAA	9 cut(s)	248, 1226, 1986, 2238, 2259, 2879, 2948, 2996, 3108
TscAI	CASTG	6 cut(s)	214, 427, 2370, 2569, 3032, 3250
TseFI	GTSAC	5 cut(s)	118, 146, 478, 2162, 2361
Tsp45I	GTSAC	5 cut(s)	118, 146, 478, 2162, 2361
TspGWI	ACGGA	4 cut(s)	188, 840, 1395, 1460
TspMI	CCCGGG	2 cut(s)	126, 1724
TspRI	CASTG	6 cut(s)	214, 427, 2370, 2569, 3032, 3250
Tth111I	GACNNNGTC	2 cut(s)	920, 2160
Van91I	CCANNNNNTGG	1 cut(s)	2683
VneI	GTGCAC	1 cut(s)	2939
VpaK11BI	GGWCC	8 cut(s)	55, 76, 161, 196, 302, 916, 1732, 2233
XapI	RAATTY	6 cut(s)	487, 620, 1311, 1549, 2467, 2679
XbaI	TCTAGA	2 cut(s)	1993, 3046
XceI	RCATGY	1 cut(s)	765
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2396
XhoI	CTCGAG	2 cut(s)	95, 3297
XmaI	CCCGGG	2 cut(s)	126, 1724
XmiI	GTMKAC	2 cut(s)	1916, 3194
XmnI	GAANNNNTTC	1 cut(s)	3387
ZraI	GACGTC	1 cut(s)	1400
Zsp2I	ATGCAT	1 cut(s)	1426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.