Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001900

Physical Location & Seq

Genomic Coordinates Reverse (-)

16351661 .. 16367504

Gene Structure 15844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTGAAACCTTCAACAATGGCGGAGGAATCAGCAGCAAATCTCAGACGTTGGATCGACCCGAAGAGCGGCTACTGCTCACATACCAAGACATTCCACTCCCTCCGGCCTTCGGTCCCACTCCCGCCACTCTCGCAACCCCTCTCCCTCACCCAATTCACCCTCTCCCTCCTCCAATCCTCTACGGCCAAGCCCACCACGTCCGTCCTCATCGACGCCGCCTCCGGCCGCCATGTCTCCTACCAAACTTTCCTCAGCCAAATCCACTCCCTCACCCTCTCCCTCCAATCCCTCGCGCTCTCCAAAGGTCATGTGGCCTTCATTCTCTCCCCTACTTCCCTCCACGTCCCCGTCCTCTATTTCTCCCTCCTTGCCTTAGGCGTCGTTGTTTCTCCTGCTAATCCAATCGGGTCCGAGTCCGAGATCGCCCACCAGGTCCGGCTAACCCAACCCGCCATCGCCTTCGCCACGTCAGCAACCGCCAACAAGCTCGCCAAAGGGGATGATAAAATCCGCACCATAATCCTCCTCGACTCACCCGAATTCCTCTCCATGCTCGACCGGGACGGGTCATCCGTAACCCAATCTGACACCTCATTGAAGTCAACCAAACCGACCCGGCTGCGATTCTTTTCTCCTCCGGCACCACCGGCCGTGTCAAAGGCGTTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

225

Amino Acids

24.02

Weight (kDa)

9.65

Isoelectric Point (pI)

57.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	62 - 196	2.9e-14	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63380
fragaria_vesca	FvH4_4g24170 FvH4_5g07750 FvH4_5g07750 FvH4_5g07750
malus_domestica	MD06G1147300.v1.1 MD06G1147500.v1.1 MD13G1113700.v1.1 MD14G1161200.v1.1 MD14G1161300.v1.1 MD16G1112900.v1.1 MD16G1113000.v1.1
prunus_persica	Prupe.1G232500_v2.0.a1 Prupe.5G154000_v2.0.a1 Prupe.5G154100_v2.0.a1
pyrus_communis	pycom06g13680 pycom06g13690 pycom13g09900 pycom14g13410 pycom16g09570 pycom16g09580
rosa_chinensis	RchiOBHm_Chr4g0430951 RchiOBHm_Chr7g0190671 RchiOBHm_Chr7g0190681
rosa_laevigata	RLG00000004504 RLG00000006935
rosa_multiflora	Rmu_co8020444.1_g000001 Rmu_sc0006263.1_g000015 Rmu_sc0006709.1_g000003 Rmu_sc0013571.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264410 Rroxscaffold_5G00372640
rosa_rugosa	Rorug04G0247400 Rorug06G0506300 Rorug06G0506400
rosa_samantha	Rh4AG303200 Rh4AG304100 Rh4BG311400 Rh4CG327700 Rh4DG307500 Rh7AG112900 Rh7BG115400 Rh7CG117900 Rh7DG116800
rosa_wichuraiana	Rw4G026360 Rw7G009850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	643
AccBSI	CCGCTC	1 cut(s)	69
AccII	CGCG	1 cut(s)	296
AciI	CCGC	8 cut(s)	23, 69, 125, 219, 229, 453, 480, 514
AclWI	GGATC	1 cut(s)	62
AcoI	YGGCCR	3 cut(s)	186, 226, 651
AcsI	RAATTY	1 cut(s)	542
AcyI	GRCGYC	2 cut(s)	216, 381
AfiI	CCNNNNNNNGG	2 cut(s)	68, 112
AgsI	TTSAA	2 cut(s)	15, 601
AjiI	CACGTC	3 cut(s)	201, 346, 471
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	1 cut(s)	490
AluI	AGCT	1 cut(s)	490
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	5 cut(s)	107, 186, 226, 315, 651
ApeKI	GCWGC	2 cut(s)	35, 622
ApoI	RAATTY	1 cut(s)	542
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	3 cut(s)	115, 411, 436
AsuC2I	CCSGG	2 cut(s)	563, 619
AsuHPI	GGTGA	5 cut(s)	16, 142, 151, 265, 528
AvaII	GGWCC	3 cut(s)	115, 411, 436
AxyI	CCTNAGG	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	643
BarI	GAAGNNNNNNTAC	2 cut(s)	56, 88
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	47, 609
BccI	CCATC	1 cut(s)	464
BceAI	ACGGC	2 cut(s)	201, 638
BcgI	CGANNNNNNTGC	2 cut(s)	604, 638
BciT130I	CCWGG	1 cut(s)	434
BcnI	CCSGG	2 cut(s)	563, 619
BcoDI	GTCTC	1 cut(s)	241
BisI	GCNGC	5 cut(s)	36, 70, 219, 229, 623
BlsI	GCNGC	5 cut(s)	37, 71, 220, 230, 624
Bme1390I	CCNGG	3 cut(s)	434, 563, 619
Bme18I	GGWCC	3 cut(s)	115, 411, 436
BmgBI	CACGTC	3 cut(s)	201, 346, 471
BmgT120I	GGNCC	3 cut(s)	115, 411, 436
BmiI	GGNNCC	3 cut(s)	117, 412, 645
BmrFI	CCNGG	3 cut(s)	434, 563, 619
Bpu10I	CCTNAGC	1 cut(s)	254
BpuMI	CCSGG	2 cut(s)	563, 619
BsaHI	GRCGYC	2 cut(s)	216, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 112
Bse118I	RCCGGY	1 cut(s)	649
Bse21I	CCTNAGG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	434
BseGI	GGATG	2 cut(s)	508, 572
BseLI	CCNNNNNNNGG	2 cut(s)	68, 112
BseMII	CTCAG	2 cut(s)	58, 268
BseRI	GAGGAG	3 cut(s)	161, 518, 627
BseX3I	CGGCCG	2 cut(s)	226, 651
BseXI	GCAGC	2 cut(s)	47, 609
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	3 cut(s)	229, 562, 654
BshFI	GGCC	5 cut(s)	109, 188, 228, 317, 653
BshNI	GGYRCC	1 cut(s)	643
BsiEI	CGRYCG	3 cut(s)	229, 562, 654
BsiSI	CCGG	7 cut(s)	106, 225, 439, 562, 619, 641, 650
BslFI	GGGAC	3 cut(s)	101, 332, 578
BslI	CCNNNNNNNGG	2 cut(s)	68, 112
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	3 cut(s)	101, 332, 578
BsnI	GGCC	5 cut(s)	109, 188, 228, 317, 653
Bsp143I	GATC	2 cut(s)	54, 423
BspACI	CCGC	8 cut(s)	23, 69, 125, 219, 229, 453, 480, 514
BspANI	GGCC	5 cut(s)	109, 188, 228, 317, 653
BspCNI	CTCAG	2 cut(s)	57, 267
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	3 cut(s)	117, 412, 645
BspPI	GGATC	1 cut(s)	62
BspQI	GCTCTTC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	643
BsrBI	CCGCTC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	649
BssAI	RCCGGY	1 cut(s)	649
BssMI	GATC	2 cut(s)	54, 423
BssNI	GRCGYC	2 cut(s)	216, 381
Bst2UI	CCWGG	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	59
BstACI	GRCGYC	2 cut(s)	216, 381
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	3 cut(s)	44, 254, 376
BstF5I	GGATG	2 cut(s)	508, 572
BstFNI	CGCG	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	2 cut(s)	57, 426
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	2 cut(s)	54, 423
BstMCI	CGRYCG	3 cut(s)	229, 562, 654
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 133, 473, 650
BstNI	CCWGG	1 cut(s)	434
BstSCI	CCNGG	3 cut(s)	432, 561, 617
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	47, 609
BstZI	CGGCCG	2 cut(s)	226, 651
Bsu36I	CCTNAGG	1 cut(s)	376
BsuRI	GGCC	5 cut(s)	109, 188, 228, 317, 653
BtgZI	GCGATG	1 cut(s)	442
BtrI	CACGTC	3 cut(s)	201, 346, 471
BtsCI	GGATG	2 cut(s)	508, 572
Cac8I	GCNNGC	1 cut(s)	492
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	649
Cfr13I	GGNCC	3 cut(s)	115, 411, 436
CseI	GACGC	2 cut(s)	224, 370
CsiI	ACCWGGT	1 cut(s)	432
CviAII	CATG	3 cut(s)	233, 311, 553
DdeI	CTNAG	3 cut(s)	44, 254, 376
DpnI	GATC	2 cut(s)	56, 425
DpnII	GATC	2 cut(s)	54, 423
EaeI	YGGCCR	3 cut(s)	186, 226, 651
EagI	CGGCCG	2 cut(s)	226, 651
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	38
EclXI	CGGCCG	2 cut(s)	226, 651
Eco47I	GGWCC	3 cut(s)	115, 411, 436
Eco52I	CGGCCG	2 cut(s)	226, 651
Eco81I	CCTNAGG	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	432
FaeI	CATG	3 cut(s)	236, 314, 556
FaiI	YATR	6 cut(s)	84, 234, 312, 521, 554, 670
FaqI	GGGAC	3 cut(s)	101, 332, 578
FatI	CATG	3 cut(s)	232, 310, 552
FauI	CCCGC	2 cut(s)	132, 460
Fnu4HI	GCNGC	5 cut(s)	36, 70, 219, 229, 623
FokI	GGATG	2 cut(s)	515, 559
Fsp4HI	GCNGC	5 cut(s)	36, 70, 219, 229, 623
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	5 cut(s)	36, 70, 219, 229, 623
HaeIII	GGCC	5 cut(s)	109, 188, 228, 317, 653
HapII	CCGG	7 cut(s)	106, 225, 439, 562, 619, 641, 650
HgaI	GACGC	2 cut(s)	224, 370
HhaI	GCGC	1 cut(s)	298
Hin1I	GRCGYC	2 cut(s)	216, 381
Hin1II	CATG	3 cut(s)	236, 314, 556
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HinfI	GANTC	4 cut(s)	29, 416, 533, 627
HpaII	CCGG	7 cut(s)	106, 225, 439, 562, 619, 641, 650
HphI	GGTGA	5 cut(s)	16, 142, 151, 265, 528
Hpy166II	GTNNAC	1 cut(s)	606
Hpy188I	TCNGA	4 cut(s)	47, 415, 421, 589
Hpy8I	GTNNAC	1 cut(s)	606
Hpy99I	CGWCG	2 cut(s)	218, 386
HpyAV	CCTTC	4 cut(s)	21, 120, 328, 472
HpyCH4IV	ACGT	4 cut(s)	49, 200, 345, 470
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 133, 473, 650
HpyF3I	CTNAG	3 cut(s)	44, 254, 376
HpySE526I	ACGT	4 cut(s)	49, 200, 345, 470
Hsp92I	GRCGYC	2 cut(s)	216, 381
Hsp92II	CATG	3 cut(s)	236, 314, 556
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	2 cut(s)	54, 423
LguI	GCTCTTC	1 cut(s)	59
Lsp1109I	GCAGC	2 cut(s)	47, 609
MabI	ACCWGGT	1 cut(s)	432
MaeII	ACGT	4 cut(s)	49, 200, 345, 470
MaeIII	GTNAC	1 cut(s)	577
MalI	GATC	2 cut(s)	56, 425
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	2 cut(s)	54, 423
MboII	GAAGA	1 cut(s)	76
MluCI	AATT	2 cut(s)	155, 542
MlyI	GAGTC	2 cut(s)	425, 527
MmeI	TCCRAC	1 cut(s)	32
MspI	CCGG	7 cut(s)	106, 225, 439, 562, 619, 641, 650
MspR9I	CCNGG	3 cut(s)	434, 563, 619
MvaI	CCWGG	1 cut(s)	434
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	4 cut(s)	75, 133, 473, 650
NciI	CCSGG	2 cut(s)	563, 619
NdeII	GATC	2 cut(s)	54, 423
NlaIII	CATG	3 cut(s)	236, 314, 556
NlaIV	GGNNCC	3 cut(s)	117, 412, 645
PciSI	GCTCTTC	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	2 cut(s)	537, 573
PfeI	GAWTC	2 cut(s)	29, 627
PkrI	GCNGC	5 cut(s)	37, 71, 220, 230, 624
PleI	GAGTC	2 cut(s)	424, 527
PpsI	GAGTC	2 cut(s)	424, 527
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	3 cut(s)	117, 412, 645
PspPI	GGNCC	3 cut(s)	115, 411, 436
SapI	GCTCTTC	1 cut(s)	59
SatI	GCNGC	5 cut(s)	36, 70, 219, 229, 623
Sau3AI	GATC	2 cut(s)	54, 423
Sau96I	GGNCC	3 cut(s)	115, 411, 436
SchI	GAGTC	2 cut(s)	425, 527
ScrFI	CCNGG	3 cut(s)	434, 563, 619
SetI	ASST	9 cut(s)	13, 52, 203, 310, 348, 438, 473, 492, 596
SexAI	ACCWGGT	1 cut(s)	432
SinI	GGWCC	3 cut(s)	115, 411, 436
Sse9I	AATT	2 cut(s)	155, 542
SsiI	CCGC	8 cut(s)	23, 69, 125, 219, 229, 453, 480, 514
StyD4I	CCNGG	3 cut(s)	432, 561, 617
TaiI	ACGT	4 cut(s)	52, 203, 348, 473
TaqI	TCGA	4 cut(s)	57, 213, 531, 558
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	2 cut(s)	155, 542
TauI	GCSGC	3 cut(s)	72, 221, 231
TfiI	GAWTC	2 cut(s)	29, 627
TseI	GCWGC	2 cut(s)	35, 622
TspDTI	ATGAA	1 cut(s)	310
TspGWI	ACGGA	2 cut(s)	193, 565
VpaK11BI	GGWCC	3 cut(s)	115, 411, 436
XapI	RAATTY	1 cut(s)	542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.